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Example 36 with InvalidSettingsException

use of org.knime.core.node.InvalidSettingsException in project knime-core by knime.

the class NewToOldTimeNodeModel method createStreamableOperator.

/**
 * {@inheritDoc}
 */
@Override
public StreamableOperator createStreamableOperator(final PartitionInfo partitionInfo, final PortObjectSpec[] inSpecs) throws InvalidSettingsException {
    return new StreamableOperator() {

        @Override
        public StreamableOperatorInternals saveInternals() {
            return null;
        }

        @Override
        public void runFinal(final PortInput[] inputs, final PortOutput[] outputs, final ExecutionContext exec) throws Exception {
            final RowInput in = (RowInput) inputs[0];
            final RowOutput out = (RowOutput) outputs[0];
            final DataTableSpec inSpec = in.getDataTableSpec();
            String[] includeList = m_colSelect.applyTo(inSpec).getIncludes();
            final int[] includeIndeces = Arrays.stream(includeList).mapToInt(s -> inSpec.findColumnIndex(s)).toArray();
            DataRow row;
            while ((row = in.poll()) != null) {
                exec.checkCanceled();
                DataCell[] datacells = new DataCell[includeIndeces.length];
                for (int i = 0; i < includeIndeces.length; i++) {
                    if (m_isReplaceOrAppend.getStringValue().equals(OPTION_REPLACE)) {
                        final DataColumnSpecCreator dataColumnSpecCreator = new DataColumnSpecCreator(includeList[i], DateAndTimeCell.TYPE);
                        final ConvertTimeCellFactory cellFac = new ConvertTimeCellFactory(dataColumnSpecCreator.createSpec(), includeIndeces[i]);
                        datacells[i] = cellFac.getCells(row)[0];
                    } else {
                        final DataColumnSpec dataColSpec = new UniqueNameGenerator(inSpec).newColumn(includeList[i] + m_suffix.getStringValue(), DateAndTimeCell.TYPE);
                        final ConvertTimeCellFactory cellFac = new ConvertTimeCellFactory(dataColSpec, includeIndeces[i]);
                        datacells[i] = cellFac.getCells(row)[0];
                    }
                }
                if (m_isReplaceOrAppend.getStringValue().equals(OPTION_REPLACE)) {
                    out.push(new ReplacedColumnsDataRow(row, datacells, includeIndeces));
                } else {
                    out.push(new AppendedColumnRow(row, datacells));
                }
            }
            in.close();
            out.close();
        }
    };
}
Also used : Arrays(java.util.Arrays) NodeSettingsRO(org.knime.core.node.NodeSettingsRO) DataTableSpec(org.knime.core.data.DataTableSpec) InvalidSettingsException(org.knime.core.node.InvalidSettingsException) CanceledExecutionException(org.knime.core.node.CanceledExecutionException) ZonedDateTime(java.time.ZonedDateTime) UniqueNameGenerator(org.knime.core.util.UniqueNameGenerator) LocalDateTime(java.time.LocalDateTime) AppendedColumnRow(org.knime.core.data.append.AppendedColumnRow) LocalTimeValue(org.knime.core.data.time.localtime.LocalTimeValue) LocalDateValue(org.knime.core.data.time.localdate.LocalDateValue) ExecutionContext(org.knime.core.node.ExecutionContext) SingleCellFactory(org.knime.core.data.container.SingleCellFactory) StreamableOperatorInternals(org.knime.core.node.streamable.StreamableOperatorInternals) DataColumnSpec(org.knime.core.data.DataColumnSpec) DataColumnSpecCreator(org.knime.core.data.DataColumnSpecCreator) LocalTime(java.time.LocalTime) ZoneOffset(java.time.ZoneOffset) DataCell(org.knime.core.data.DataCell) ZonedDateTimeValue(org.knime.core.data.time.zoneddatetime.ZonedDateTimeValue) PortInput(org.knime.core.node.streamable.PortInput) ExecutionMonitor(org.knime.core.node.ExecutionMonitor) PartitionInfo(org.knime.core.node.streamable.PartitionInfo) RowInput(org.knime.core.node.streamable.RowInput) PortObjectSpec(org.knime.core.node.port.PortObjectSpec) IOException(java.io.IOException) SettingsModelColumnFilter2(org.knime.core.node.defaultnodesettings.SettingsModelColumnFilter2) OutputPortRole(org.knime.core.node.streamable.OutputPortRole) ReplacedColumnsDataRow(org.knime.base.data.replace.ReplacedColumnsDataRow) NodeModel(org.knime.core.node.NodeModel) File(java.io.File) DataRow(org.knime.core.data.DataRow) SettingsModelString(org.knime.core.node.defaultnodesettings.SettingsModelString) PortOutput(org.knime.core.node.streamable.PortOutput) NodeSettingsWO(org.knime.core.node.NodeSettingsWO) TimeUnit(java.util.concurrent.TimeUnit) BufferedDataTable(org.knime.core.node.BufferedDataTable) LocalDateTimeValue(org.knime.core.data.time.localdatetime.LocalDateTimeValue) InputPortRole(org.knime.core.node.streamable.InputPortRole) LocalDate(java.time.LocalDate) ColumnRearranger(org.knime.core.data.container.ColumnRearranger) DateAndTimeCell(org.knime.core.data.date.DateAndTimeCell) RowOutput(org.knime.core.node.streamable.RowOutput) StreamableOperator(org.knime.core.node.streamable.StreamableOperator) DataTableSpec(org.knime.core.data.DataTableSpec) DataColumnSpecCreator(org.knime.core.data.DataColumnSpecCreator) StreamableOperator(org.knime.core.node.streamable.StreamableOperator) SettingsModelString(org.knime.core.node.defaultnodesettings.SettingsModelString) RowInput(org.knime.core.node.streamable.RowInput) ReplacedColumnsDataRow(org.knime.base.data.replace.ReplacedColumnsDataRow) DataRow(org.knime.core.data.DataRow) UniqueNameGenerator(org.knime.core.util.UniqueNameGenerator) RowOutput(org.knime.core.node.streamable.RowOutput) ExecutionContext(org.knime.core.node.ExecutionContext) DataColumnSpec(org.knime.core.data.DataColumnSpec) DataCell(org.knime.core.data.DataCell) ReplacedColumnsDataRow(org.knime.base.data.replace.ReplacedColumnsDataRow) AppendedColumnRow(org.knime.core.data.append.AppendedColumnRow)

Example 37 with InvalidSettingsException

use of org.knime.core.node.InvalidSettingsException in project knime-core by knime.

the class TwoSampleTTest method execute.

public TwoSampleTTestStatistics[] execute(final BufferedDataTable table, final ExecutionContext exec) throws InvalidSettingsException, CanceledExecutionException {
    DataTableSpec spec = table.getDataTableSpec();
    int groupingIndex = spec.findColumnIndex(m_grouping.getColumn());
    if (groupingIndex == -1) {
        throw new InvalidSettingsException("Grouping column not found.");
    }
    int[] testColumnsIndex = new int[m_testColumns.length];
    for (int i = 0; i < testColumnsIndex.length; i++) {
        testColumnsIndex[i] = spec.findColumnIndex(m_testColumns[i]);
    }
    int testColumnCount = m_testColumns.length;
    TwoSampleTTestStatistics[] result = new TwoSampleTTestStatistics[testColumnCount];
    for (int i = 0; i < testColumnCount; i++) {
        result[i] = new TwoSampleTTestStatistics(m_testColumns[i], m_grouping.getGroupLabels(), m_confidenceIntervalProb);
    }
    final int rowCount = table.getRowCount();
    int rowIndex = 0;
    for (DataRow row : table) {
        exec.checkCanceled();
        exec.setProgress(rowIndex++ / (double) rowCount, rowIndex + "/" + rowCount + " (\"" + row.getKey() + "\")");
        DataCell groupCell = row.getCell(groupingIndex);
        Group group = m_grouping.getGroup(groupCell);
        for (int i = 0; i < testColumnCount; i++) {
            if (group == null) {
                if (groupCell.isMissing()) {
                    result[i].addMissingGroup();
                } else {
                    result[i].addIgnoredGroup();
                }
                continue;
            }
            DataCell cell = row.getCell(testColumnsIndex[i]);
            if (!cell.isMissing()) {
                DoubleValue value = (DoubleValue) cell;
                result[i].addValue(value.getDoubleValue(), group);
            } else {
                result[i].addMissing(group);
            }
        }
    }
    return result;
}
Also used : Group(org.knime.base.node.stats.testing.ttest.Grouping.Group) DataTableSpec(org.knime.core.data.DataTableSpec) InvalidSettingsException(org.knime.core.node.InvalidSettingsException) DoubleValue(org.knime.core.data.DoubleValue) DataCell(org.knime.core.data.DataCell) DataRow(org.knime.core.data.DataRow)

Example 38 with InvalidSettingsException

use of org.knime.core.node.InvalidSettingsException in project knime-core by knime.

the class StringToDurationPeriodNodeModel method createColumnRearranger.

private ColumnRearranger createColumnRearranger(final DataTableSpec spec) throws InvalidSettingsException {
    final ColumnRearranger rearranger = new ColumnRearranger(spec);
    final String[] includeList = m_colSelect.applyTo(spec).getIncludes();
    final int[] includeIndices = Arrays.stream(m_colSelect.applyTo(spec).getIncludes()).mapToInt(s -> spec.findColumnIndex(s)).toArray();
    int i = 0;
    for (final String includedCol : includeList) {
        if (m_isReplaceOrAppend.getStringValue().equals(OPTION_REPLACE)) {
            final DataColumnSpecCreator dataColumnSpecCreator = new DataColumnSpecCreator(includedCol, m_detectedTypes[i]);
            final StringToDurationPeriodCellFactory cellFac = new StringToDurationPeriodCellFactory(dataColumnSpecCreator.createSpec(), includeIndices[i++]);
            rearranger.replace(cellFac, includedCol);
        } else {
            final DataColumnSpec dataColSpec = new UniqueNameGenerator(spec).newColumn(includedCol + m_suffix.getStringValue(), m_detectedTypes[i]);
            final StringToDurationPeriodCellFactory cellFac = new StringToDurationPeriodCellFactory(dataColSpec, includeIndices[i++]);
            rearranger.append(cellFac);
        }
    }
    return rearranger;
}
Also used : Arrays(java.util.Arrays) NodeSettingsRO(org.knime.core.node.NodeSettingsRO) DataTableSpec(org.knime.core.data.DataTableSpec) InvalidSettingsException(org.knime.core.node.InvalidSettingsException) CanceledExecutionException(org.knime.core.node.CanceledExecutionException) UniqueNameGenerator(org.knime.core.util.UniqueNameGenerator) AppendedColumnRow(org.knime.core.data.append.AppendedColumnRow) ExecutionContext(org.knime.core.node.ExecutionContext) SingleCellFactory(org.knime.core.data.container.SingleCellFactory) DataTableRowInput(org.knime.core.node.streamable.DataTableRowInput) StreamableOperatorInternals(org.knime.core.node.streamable.StreamableOperatorInternals) DataColumnSpec(org.knime.core.data.DataColumnSpec) DataColumnSpecCreator(org.knime.core.data.DataColumnSpecCreator) LinkedList(java.util.LinkedList) DataCell(org.knime.core.data.DataCell) StringValue(org.knime.core.data.StringValue) InputFilter(org.knime.core.node.util.filter.InputFilter) PortInput(org.knime.core.node.streamable.PortInput) DurationPeriodFormatUtils(org.knime.time.util.DurationPeriodFormatUtils) ExecutionMonitor(org.knime.core.node.ExecutionMonitor) DurationCellFactory(org.knime.core.data.time.duration.DurationCellFactory) PartitionInfo(org.knime.core.node.streamable.PartitionInfo) RowInput(org.knime.core.node.streamable.RowInput) SettingsModelBoolean(org.knime.core.node.defaultnodesettings.SettingsModelBoolean) PortObjectSpec(org.knime.core.node.port.PortObjectSpec) IOException(java.io.IOException) SettingsModelColumnFilter2(org.knime.core.node.defaultnodesettings.SettingsModelColumnFilter2) OutputPortRole(org.knime.core.node.streamable.OutputPortRole) ReplacedColumnsDataRow(org.knime.base.data.replace.ReplacedColumnsDataRow) NodeModel(org.knime.core.node.NodeModel) File(java.io.File) DataRow(org.knime.core.data.DataRow) SettingsModelString(org.knime.core.node.defaultnodesettings.SettingsModelString) PortOutput(org.knime.core.node.streamable.PortOutput) NodeSettingsWO(org.knime.core.node.NodeSettingsWO) DateTimeParseException(java.time.format.DateTimeParseException) List(java.util.List) BufferedDataTable(org.knime.core.node.BufferedDataTable) InputPortRole(org.knime.core.node.streamable.InputPortRole) MissingCell(org.knime.core.data.MissingCell) ColumnRearranger(org.knime.core.data.container.ColumnRearranger) Config(org.knime.core.node.config.Config) SimpleStreamableOperatorInternals(org.knime.core.node.streamable.simple.SimpleStreamableOperatorInternals) DataType(org.knime.core.data.DataType) PeriodCellFactory(org.knime.core.data.time.period.PeriodCellFactory) MergeOperator(org.knime.core.node.streamable.MergeOperator) RowOutput(org.knime.core.node.streamable.RowOutput) StreamableOperator(org.knime.core.node.streamable.StreamableOperator) ColumnRearranger(org.knime.core.data.container.ColumnRearranger) DataColumnSpecCreator(org.knime.core.data.DataColumnSpecCreator) DataColumnSpec(org.knime.core.data.DataColumnSpec) SettingsModelString(org.knime.core.node.defaultnodesettings.SettingsModelString) UniqueNameGenerator(org.knime.core.util.UniqueNameGenerator)

Example 39 with InvalidSettingsException

use of org.knime.core.node.InvalidSettingsException in project knime-core by knime.

the class CreateDateTimeNodeDialog method saveSettingsTo.

/**
 * {@inheritDoc}
 */
@Override
protected void saveSettingsTo(final NodeSettingsWO settings) throws InvalidSettingsException {
    updateWarningLabel();
    final String text = m_warningLabel.getText();
    if (!StringUtils.isEmpty(text)) {
        throw new InvalidSettingsException(text);
    }
    settings.addString("type", ((DateTimeType) m_typeCombobox.getModel().getSelectedItem()).name());
    m_dialogCompColumnName.saveSettingsTo(settings);
    m_dialogCompRowNrOptionSelection.saveSettingsTo(settings);
    m_dialogCompRowNrFixed.saveSettingsTo(settings);
    m_dialogCompStart.saveSettingsTo(settings);
    m_dialogCompDurationOrEnd.saveSettingsTo(settings);
    m_dialogCompDuration.saveSettingsTo(settings);
    m_dialogCompEnd.saveSettingsTo(settings);
    m_dialogCompStartUseExecTime.saveSettingsTo(settings);
    m_dialogCompEndUseExecTime.saveSettingsTo(settings);
}
Also used : InvalidSettingsException(org.knime.core.node.InvalidSettingsException) DialogComponentString(org.knime.core.node.defaultnodesettings.DialogComponentString) SettingsModelString(org.knime.core.node.defaultnodesettings.SettingsModelString)

Example 40 with InvalidSettingsException

use of org.knime.core.node.InvalidSettingsException in project knime-core by knime.

the class DateTimeDifferenceNodeModel method validateSettings.

/**
 * {@inheritDoc}
 */
@Override
protected void validateSettings(final NodeSettingsRO settings) throws InvalidSettingsException {
    m_col1stSelectModel.validateSettings(settings);
    m_col2ndSelectModel.validateSettings(settings);
    m_modusSelectModel.validateSettings(settings);
    SettingsModelString temp = createModusSelection();
    temp.loadSettingsFrom(settings);
    try {
        ModusOptions.valueOf(temp.getStringValue());
    } catch (IllegalArgumentException ex) {
        throw new InvalidSettingsException("Unknown difference modus '" + temp.getStringValue() + "'");
    }
    m_fixedDateTimeModel.validateSettings(settings);
    m_calculationSelectModel.validateSettings(settings);
    m_granularityModel.validateSettings(settings);
    m_newColNameModel.validateSettings(settings);
}
Also used : InvalidSettingsException(org.knime.core.node.InvalidSettingsException) SettingsModelString(org.knime.core.node.defaultnodesettings.SettingsModelString)

Aggregations

InvalidSettingsException (org.knime.core.node.InvalidSettingsException)818 DataTableSpec (org.knime.core.data.DataTableSpec)278 DataColumnSpec (org.knime.core.data.DataColumnSpec)211 SettingsModelString (org.knime.core.node.defaultnodesettings.SettingsModelString)153 NodeSettingsRO (org.knime.core.node.NodeSettingsRO)121 ColumnRearranger (org.knime.core.data.container.ColumnRearranger)113 IOException (java.io.IOException)109 DataCell (org.knime.core.data.DataCell)99 ArrayList (java.util.ArrayList)96 DataType (org.knime.core.data.DataType)89 PortObjectSpec (org.knime.core.node.port.PortObjectSpec)82 File (java.io.File)72 DataColumnSpecCreator (org.knime.core.data.DataColumnSpecCreator)69 DataRow (org.knime.core.data.DataRow)66 DoubleValue (org.knime.core.data.DoubleValue)58 CanceledExecutionException (org.knime.core.node.CanceledExecutionException)48 SettingsModelFilterString (org.knime.core.node.defaultnodesettings.SettingsModelFilterString)47 FileInputStream (java.io.FileInputStream)43 LinkedHashMap (java.util.LinkedHashMap)42 NotConfigurableException (org.knime.core.node.NotConfigurableException)41