Examples with Attribute org.molgenis.data.meta.model.Attribute used on opensource projects

Example 71 with Attribute

use of org.molgenis.data.meta.model.Attribute in project molgenis by molgenis.

the class SystemEntityTypeRegistryImplTest method testGetSystemAttributeCompound.

@Test
public void testGetSystemAttributeCompound() {
    String entityTypeId = "entityType";
    SystemEntityType systemEntityType = mock(SystemEntityType.class);
    when(systemEntityType.getId()).thenReturn(entityTypeId);
    Attribute attr = when(mock(Attribute.class).getIdentifier()).thenReturn("attr").getMock();
    when(attr.getDataType()).thenReturn(AttributeType.STRING);
    Attribute compoundAttr = when(mock(Attribute.class).getIdentifier()).thenReturn("compoundAttr").getMock();
    when(compoundAttr.getDataType()).thenReturn(AttributeType.COMPOUND);
    when(compoundAttr.getChildren()).thenReturn(singletonList(attr));
    when(systemEntityType.getAllAttributes()).thenReturn(singletonList(compoundAttr));
    when(permissionService.hasPermission(new EntityTypeIdentity(entityTypeId), EntityTypePermission.COUNT)).thenReturn(true);
    systemEntityTypeRegistry.addSystemEntityType(systemEntityType);
    assertEquals(systemEntityTypeRegistry.getSystemAttribute("attr"), attr);
}

Example 72 with Attribute

use of org.molgenis.data.meta.model.Attribute in project molgenis by molgenis.

the class SystemEntityTypeRegistryImplTest method testGetSystemAttributeCompoundNotExists.

@Test
public void testGetSystemAttributeCompoundNotExists() {
    String entityTypeId = "entityType";
    SystemEntityType systemEntityType = mock(SystemEntityType.class);
    when(systemEntityType.getId()).thenReturn(entityTypeId);
    Attribute attr = when(mock(Attribute.class).getIdentifier()).thenReturn("attr").getMock();
    when(attr.getDataType()).thenReturn(AttributeType.STRING);
    Attribute compoundAttr = when(mock(Attribute.class).getIdentifier()).thenReturn("compoundAttr").getMock();
    when(compoundAttr.getDataType()).thenReturn(AttributeType.COMPOUND);
    when(compoundAttr.getChildren()).thenReturn(singletonList(attr));
    when(systemEntityType.getAllAttributes()).thenReturn(singletonList(compoundAttr));
    when(permissionService.hasPermission(new EntityTypeIdentity(entityTypeId), EntityTypePermission.COUNT)).thenReturn(true);
    systemEntityTypeRegistry.addSystemEntityType(systemEntityType);
    assertNull(systemEntityTypeRegistry.getSystemAttribute("unknownAttr"));
}

Example 73 with Attribute

use of org.molgenis.data.meta.model.Attribute in project molgenis by molgenis.

the class RestService method convertMref.

private List<?> convertMref(Attribute attr, Object paramValue) {
    List<?> value;
    if (paramValue != null) {
        List<?> mrefParamValues;
        if (paramValue instanceof String) {
            mrefParamValues = asList(StringUtils.split((String) paramValue, ','));
        } else if (paramValue instanceof List<?>) {
            mrefParamValues = (List<?>) paramValue;
        } else {
            throw new MolgenisDataException(format("Attribute [%s] value is of type [%s] instead of [%s] or [%s]", attr.getName(), paramValue.getClass().getSimpleName(), String.class.getSimpleName(), List.class.getSimpleName()));
        }
        EntityType mrefEntity = attr.getRefEntity();
        Attribute mrefEntityIdAttr = mrefEntity.getIdAttribute();
        value = mrefParamValues.stream().map(mrefParamValue -> toEntityValue(mrefEntityIdAttr, mrefParamValue, null)).map(mrefIdValue -> entityManager.getReference(mrefEntity, mrefIdValue)).collect(toList());
    } else {
        value = emptyList();
    }
    return value;
}

Example 74 with Attribute

use of org.molgenis.data.meta.model.Attribute in project molgenis by molgenis.

the class AlgorithmGeneratorServiceImplTest method testConvertUnitsAlgorithm.

@Test
public void testConvertUnitsAlgorithm() {
    EntityType targetEntityType = entityTypeFactory.create("target");
    Attribute targetAttribute = attrMetaFactory.create().setName("targetHeight");
    targetAttribute.setLabel("height in m");
    targetAttribute.setDataType(DECIMAL);
    targetEntityType.addAttribute(targetAttribute);
    EntityType sourceEntityType = entityTypeFactory.create("source");
    Attribute sourceAttribute = attrMetaFactory.create().setName("sourceHeight");
    sourceAttribute.setDataType(DECIMAL);
    sourceAttribute.setLabel("body length in cm");
    sourceEntityType.addAttribute(sourceAttribute);
    String actualAlgorithm = algorithmGeneratorService.generate(targetAttribute, Lists.newArrayList(sourceAttribute), targetEntityType, sourceEntityType);
    String expectedAlgorithm = "$('sourceHeight').unit('cm').toUnit('m').value();";
    assertEquals(actualAlgorithm, expectedAlgorithm);
}

Example 75 with Attribute

use of org.molgenis.data.meta.model.Attribute in project molgenis by molgenis.

the class AttributeMappingRepositoryImplTest method testRetrieveAttributesFromAlgorithm.

@Test
public void testRetrieveAttributesFromAlgorithm() {
    String algorithm = "$('attribute_1').value()$('attribute_2').value()";
    Attribute attr1 = attrMetaFactory.create().setName("attribute_1");
    Attribute attr2 = attrMetaFactory.create().setName("attribute_2");
    EntityType sourceEntityType = entityTypeFactory.create("source");
    sourceEntityType.addAttribute(attr1);
    sourceEntityType.addAttribute(attr2);
    List<Attribute> sourceAttributes = newArrayList();
    sourceAttributes.add(attr1);
    sourceAttributes.add(attr2);
    assertEquals(attributeMappingRepository.retrieveAttributesFromAlgorithm(algorithm, sourceEntityType), sourceAttributes);
}