Examples with Attribute org.molgenis.data.meta.model.Attribute used on opensource projects

Example 96 with Attribute

use of org.molgenis.data.meta.model.Attribute in project molgenis by molgenis.

the class MappingServiceController method getFirstAttributeMappingInfo.

/**
 * Find the firstattributeMapping skip the the algorithmStates that are given in the {@link AttributeMapping} to an
 * {@link EntityMapping}.
 *
 * @param mappingProjectId    ID of the mapping project
 * @param target              name of the target entity
 * @param skipAlgorithmStates the mapping algorithm states that should skip
 */
@PostMapping("/firstattributemapping")
@ResponseBody
public FirstAttributeMappingInfo getFirstAttributeMappingInfo(@RequestParam() String mappingProjectId, @RequestParam() String target, @RequestParam(value = "skipAlgorithmStates[]") List<AlgorithmState> skipAlgorithmStates, Model model) {
    MappingProject mappingProject = mappingService.getMappingProject(mappingProjectId);
    if (hasWritePermission(mappingProject)) {
        MappingTarget mappingTarget = mappingProject.getMappingTarget(target);
        List<String> sourceNames = mappingTarget.getEntityMappings().stream().map(i -> i.getSourceEntityType().getId()).collect(Collectors.toList());
        EntityType targetEntityMeta = mappingTarget.getTarget();
        for (Attribute attribute : targetEntityMeta.getAtomicAttributes()) {
            if (attribute.equals(targetEntityMeta.getIdAttribute())) {
                continue;
            }
            for (String source : sourceNames) {
                EntityMapping entityMapping = mappingTarget.getMappingForSource(source);
                AttributeMapping attributeMapping = entityMapping.getAttributeMapping(attribute.getName());
                if (null != attributeMapping) {
                    AlgorithmState algorithmState = attributeMapping.getAlgorithmState();
                    if (null != skipAlgorithmStates) {
                        if (skipAlgorithmStates.contains(algorithmState)) {
                            continue;
                        }
                    }
                }
                return FirstAttributeMappingInfo.create(mappingProjectId, target, source, attribute.getName());
            }
        }
    }
    return null;
}

Example 97 with Attribute

use of org.molgenis.data.meta.model.Attribute in project molgenis by molgenis.

the class AttributeMappingRepositoryImpl method toAttributeMappingEntity.

private Entity toAttributeMappingEntity(AttributeMapping attributeMapping) {
    Entity attributeMappingEntity = new DynamicEntity(attributeMappingMetaData);
    attributeMappingEntity.set(IDENTIFIER, attributeMapping.getIdentifier());
    attributeMappingEntity.set(TARGET_ATTRIBUTE, attributeMapping.getTargetAttributeName());
    attributeMappingEntity.set(ALGORITHM, attributeMapping.getAlgorithm());
    attributeMappingEntity.set(SOURCE_ATTRIBUTES, attributeMapping.getSourceAttributes().stream().map(Attribute::getName).collect(Collectors.joining(",")));
    attributeMappingEntity.set(ALGORITHM_STATE, attributeMapping.getAlgorithmState().toString());
    return attributeMappingEntity;
}

Example 98 with Attribute

use of org.molgenis.data.meta.model.Attribute in project molgenis by molgenis.

the class AttributeMappingRepositoryImpl method toAttributeMapping.

private AttributeMapping toAttributeMapping(Entity attributeMappingEntity, EntityType sourceEntityType, EntityType targetEntityType) {
    String identifier = attributeMappingEntity.getString(IDENTIFIER);
    String targetAttributeName = attributeMappingEntity.getString(TARGET_ATTRIBUTE);
    Attribute targetAttribute = targetEntityType.getAttribute(targetAttributeName);
    String algorithm = attributeMappingEntity.getString(ALGORITHM);
    String algorithmState = attributeMappingEntity.getString(ALGORITHM_STATE);
    List<Attribute> sourceAttributes = retrieveAttributesFromAlgorithm(algorithm, sourceEntityType);
    return new AttributeMapping(identifier, targetAttributeName, targetAttribute, algorithm, sourceAttributes, algorithmState);
}

Example 99 with Attribute

use of org.molgenis.data.meta.model.Attribute in project molgenis by molgenis.

the class AttributeMappingRepositoryImpl method retrieveAttributesFromAlgorithm.

@Override
public List<Attribute> retrieveAttributesFromAlgorithm(String algorithm, EntityType sourceEntityType) {
    List<Attribute> sourceAttributes = Lists.newArrayList();
    Pattern pattern = Pattern.compile("\\$\\('([^']+)'\\)");
    Matcher matcher = pattern.matcher(algorithm);
    while (matcher.find()) {
        String sourceAttribute = matcher.group(1).split("\\.")[0];
        Attribute attribute = sourceEntityType.getAttribute(sourceAttribute);
        if (!sourceAttributes.contains(attribute)) {
            sourceAttributes.add(attribute);
        }
    }
    return sourceAttributes;
}

Example 100 with Attribute

use of org.molgenis.data.meta.model.Attribute in project molgenis by molgenis.

the class OneToManyCategoryAlgorithmGeneratorTest method createEntityType.

private EntityType createEntityType(String entityTypeId) {
    EntityType sourceRefEntityType = entityTypeFactory.create(entityTypeId);
    Attribute sourceCodeAttribute = attrMetaFactory.create().setName("code").setDataType(INT);
    Attribute sourceLabelAttribute = attrMetaFactory.create().setName("label");
    sourceRefEntityType.addAttribute(sourceCodeAttribute, ROLE_ID);
    sourceRefEntityType.addAttribute(sourceLabelAttribute, ROLE_LABEL);
    return sourceRefEntityType;
}