use of org.molgenis.util.UnexpectedEnumException in project molgenis by molgenis.
the class EntityAttributesValidator method validate.
public Set<ConstraintViolation> validate(Entity entity, EntityType meta) {
Set<ConstraintViolation> violations = checkNullableExpressions(entity, meta);
violations.addAll(checkValidationExpressions(entity, meta));
for (Attribute attr : meta.getAtomicAttributes()) {
ConstraintViolation violation = null;
AttributeType attrType = attr.getDataType();
switch(attrType) {
case EMAIL:
violation = checkEmail(entity, attr, meta);
break;
case BOOL:
violation = checkBoolean(entity, attr, meta);
break;
case DATE:
violation = checkDate(entity, attr, meta);
break;
case DATE_TIME:
violation = checkDateTime(entity, attr, meta);
break;
case DECIMAL:
violation = checkDecimal(entity, attr, meta);
break;
case HYPERLINK:
violation = checkHyperlink(entity, attr, meta);
break;
case INT:
violation = checkInt(entity, attr, meta);
if ((violation == null) && (attr.getRange() != null)) {
violation = checkRange(entity, attr, meta);
}
break;
case LONG:
violation = checkLong(entity, attr, meta);
if ((violation == null) && (attr.getRange() != null)) {
violation = checkRange(entity, attr, meta);
}
break;
case ENUM:
violation = checkEnum(entity, attr, meta);
break;
case HTML:
violation = checkText(entity, attr, meta, HTML);
break;
case SCRIPT:
violation = checkText(entity, attr, meta, SCRIPT);
break;
case TEXT:
violation = checkText(entity, attr, meta, TEXT);
break;
case STRING:
violation = checkText(entity, attr, meta, STRING);
break;
case CATEGORICAL:
case FILE:
case XREF:
violation = checkXref(entity, attr, meta);
break;
case CATEGORICAL_MREF:
case MREF:
case ONE_TO_MANY:
violation = checkMref(entity, attr, meta);
break;
case COMPOUND:
// no op
break;
default:
throw new UnexpectedEnumException(attrType);
}
if (violation != null) {
violations.add(violation);
}
}
return violations;
}
use of org.molgenis.util.UnexpectedEnumException in project molgenis by molgenis.
the class QueryValidator method toQueryRuleValue.
private Object toQueryRuleValue(Object queryRuleValue, Attribute attr) {
Object value;
AttributeType attrType = attr.getDataType();
switch(attrType) {
case BOOL:
value = convertBool(attr, queryRuleValue);
break;
case EMAIL:
case HTML:
case HYPERLINK:
case SCRIPT:
case STRING:
case TEXT:
value = convertString(attr, queryRuleValue);
break;
case ENUM:
value = convertEnum(attr, queryRuleValue);
break;
case CATEGORICAL:
case XREF:
case CATEGORICAL_MREF:
case MREF:
case ONE_TO_MANY:
value = convertRef(attr, queryRuleValue);
break;
case DATE:
value = convertDate(attr, queryRuleValue);
break;
case DATE_TIME:
value = convertDateTime(attr, queryRuleValue);
break;
case DECIMAL:
value = convertDecimal(attr, queryRuleValue);
break;
case FILE:
value = convertFile(attr, queryRuleValue);
break;
case INT:
value = convertInt(attr, queryRuleValue);
break;
case LONG:
value = convertLong(attr, queryRuleValue);
break;
case COMPOUND:
throw new MolgenisValidationException(new ConstraintViolation(format("Attribute [%s] type [%s] is not allowed", attr.getName(), attrType.toString())));
default:
throw new UnexpectedEnumException(attrType);
}
return value;
}
use of org.molgenis.util.UnexpectedEnumException in project molgenis by molgenis.
the class AttributeValidator method validate.
public void validate(Attribute attr, ValidationMode validationMode) {
validateName(attr);
validateDefaultValue(attr, validationMode == ADD || validationMode == UPDATE);
validateParent(attr);
validateChildren(attr);
switch(validationMode) {
case ADD:
case ADD_SKIP_ENTITY_VALIDATION:
validateAdd(attr);
break;
case UPDATE:
case UPDATE_SKIP_ENTITY_VALIDATION:
Attribute currentAttr = dataService.findOneById(ATTRIBUTE_META_DATA, attr.getIdentifier(), Attribute.class);
validateUpdate(attr, currentAttr);
break;
default:
throw new UnexpectedEnumException(validationMode);
}
}
use of org.molgenis.util.UnexpectedEnumException in project molgenis by molgenis.
the class EntityUtils method isNullValue.
/**
* Returns whether an entity attribute value is <tt>null</tt> or empty for attributes referencing multiple entities.
*/
public static boolean isNullValue(Entity entity, Attribute attribute) {
boolean isNullValue;
String attributeName = attribute.getName();
AttributeType attributeType = attribute.getDataType();
switch(attributeType) {
case BOOL:
isNullValue = entity.getBoolean(attributeName) == null;
break;
case CATEGORICAL:
case FILE:
case XREF:
isNullValue = entity.getEntity(attributeName) == null;
break;
case CATEGORICAL_MREF:
case MREF:
case ONE_TO_MANY:
Iterable<Entity> refEntities = entity.getEntities(attributeName);
isNullValue = Iterables.isEmpty(refEntities);
break;
case COMPOUND:
throw new RuntimeException(format("Invalid data type [%s]", attribute.getDataType()));
case DATE:
isNullValue = entity.getLocalDate(attributeName) == null;
break;
case DATE_TIME:
isNullValue = entity.getInstant(attributeName) == null;
break;
case DECIMAL:
isNullValue = entity.getDouble(attributeName) == null;
break;
case EMAIL:
case ENUM:
case HTML:
case HYPERLINK:
case SCRIPT:
case STRING:
case TEXT:
isNullValue = entity.getString(attributeName) == null;
break;
case INT:
isNullValue = entity.getInt(attributeName) == null;
break;
case LONG:
isNullValue = entity.getLong(attributeName) == null;
break;
default:
throw new UnexpectedEnumException(attributeType);
}
return isNullValue;
}
use of org.molgenis.util.UnexpectedEnumException in project molgenis by molgenis.
the class JsMagmaScriptEvaluator method toScriptEngineValue.
private Object toScriptEngineValue(Entity entity, Attribute attr, int depth) {
Object value = null;
String attrName = attr.getName();
AttributeType attrType = attr.getDataType();
switch(attrType) {
case BOOL:
value = entity.getBoolean(attrName);
break;
case CATEGORICAL:
case FILE:
case XREF:
Entity xrefEntity = entity.getEntity(attrName);
value = toScriptEngineValueMap(xrefEntity, depth - 1);
break;
case CATEGORICAL_MREF:
case MREF:
case ONE_TO_MANY:
ScriptObjectMirror jsArray = null;
try {
jsArray = (ScriptObjectMirror) jsScriptEngine.eval("var arr = []; arr");
@SuppressWarnings("unchecked") List<Object> mrefValues = jsArray.to(List.class);
entity.getEntities(attrName).forEach(mrefEntity -> mrefValues.add(toScriptEngineValueMap(mrefEntity, depth - 1)));
} catch (javax.script.ScriptException ex) {
// Do not catch this error to allow
// the mapping service to collect errors to show in the UI
}
value = jsArray;
break;
case DATE:
LocalDate localDate = entity.getLocalDate(attrName);
if (localDate != null) {
value = localDate.atStartOfDay(ZoneId.systemDefault()).toInstant().toEpochMilli();
}
break;
case DATE_TIME:
Instant instant = entity.getInstant(attrName);
if (instant != null) {
value = instant.toEpochMilli();
}
break;
case DECIMAL:
value = entity.getDouble(attrName);
break;
case EMAIL:
case ENUM:
case HTML:
case HYPERLINK:
case SCRIPT:
case STRING:
case TEXT:
value = entity.getString(attrName);
break;
case INT:
value = entity.getInt(attrName);
break;
case LONG:
value = entity.getLong(attrName);
break;
case COMPOUND:
throw new RuntimeException(format("Illegal attribute type [%s]", attrType.toString()));
default:
throw new UnexpectedEnumException(attrType);
}
return value;
}
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