Examples with UnexpectedEnumException org.molgenis.util.UnexpectedEnumException used on opensource projects

Example 31 with UnexpectedEnumException

use of org.molgenis.util.UnexpectedEnumException in project molgenis by molgenis.

the class ExcelSheetWriter method writeAttributeHeaders.

/**
 * Write sheet column headers
 */
public void writeAttributeHeaders(Iterable<Attribute> attributes, AttributeWriteMode attributeWriteMode) {
    if (attributes == null)
        throw new IllegalArgumentException("Attributes cannot be null");
    if (attributeWriteMode == null)
        throw new IllegalArgumentException("AttributeWriteMode cannot be null");
    if (cachedAttributes == null) {
        Row poiRow = sheet.createRow(row++);
        // write header
        int i = 0;
        for (Attribute attribute : attributes) {
            Cell cell = poiRow.createCell(i++, CellType.STRING);
            switch(attributeWriteMode) {
                case ATTRIBUTE_LABELS:
                    cell.setCellValue(AbstractCellProcessor.processCell(attribute.getLabel(), true, cellProcessors));
                    break;
                case ATTRIBUTE_NAMES:
                    cell.setCellValue(AbstractCellProcessor.processCell(attribute.getName(), true, cellProcessors));
                    break;
                default:
                    throw new UnexpectedEnumException(attributeWriteMode);
            }
        }
        // store header
        this.cachedAttributes = attributes;
    }
}

Example 32 with UnexpectedEnumException

use of org.molgenis.util.UnexpectedEnumException in project molgenis by molgenis.

the class CsvWriter method toValue.

private String toValue(Object obj) {
    String value;
    if (obj == null) {
        value = null;
    } else if (obj instanceof Entity) {
        if (getEntityWriteMode() != null) {
            switch(getEntityWriteMode()) {
                case ENTITY_IDS:
                    value = ((Entity) obj).getIdValue().toString();
                    break;
                case ENTITY_LABELS:
                    Object labelValue = ((Entity) obj).getLabelValue();
                    value = labelValue != null ? labelValue.toString() : null;
                    break;
                default:
                    throw new UnexpectedEnumException(getEntityWriteMode());
            }
        } else {
            Object labelValue = ((Entity) obj).getLabelValue();
            value = labelValue != null ? labelValue.toString() : null;
        }
    } else if (obj instanceof Iterable<?>) {
        StringBuilder strBuilder = new StringBuilder();
        for (Object listItem : (Iterable<?>) obj) {
            if (strBuilder.length() > 0)
                strBuilder.append(',');
            strBuilder.append(toValue(listItem));
        }
        // TODO apply cell processors to list elements?
        value = strBuilder.toString();
    } else {
        value = obj.toString();
    }
    return AbstractCellProcessor.processCell(value, false, this.cellProcessors);
}

Example 33 with UnexpectedEnumException

use of org.molgenis.util.UnexpectedEnumException in project molgenis by molgenis.

the class QueryGenerator method createQueryClauseFuzzyMatchNgram.

private QueryBuilder createQueryClauseFuzzyMatchNgram(QueryRule queryRule, EntityType entityType) {
    String queryField = queryRule.getField();
    Object queryValue = queryRule.getValue();
    QueryBuilder queryBuilder;
    if (queryValue == null)
        throw new MolgenisQueryException("Query value cannot be null");
    if (queryField == null) {
        queryBuilder = QueryBuilders.matchQuery("_all", queryValue);
    } else {
        Attribute attr = entityType.getAttribute(queryField);
        if (attr == null) {
            throw new UnknownAttributeException(entityType, queryField);
        }
        // construct query part
        AttributeType dataType = attr.getDataType();
        switch(dataType) {
            case DATE:
            case DATE_TIME:
            case DECIMAL:
            case EMAIL:
            case ENUM:
            case HTML:
            case HYPERLINK:
            case INT:
            case LONG:
            case SCRIPT:
            case STRING:
            case TEXT:
                queryField = getQueryFieldName(attr) + ".ngram";
                queryBuilder = QueryBuilders.queryStringQuery(queryField + ":(" + queryValue + ")");
                break;
            case MREF:
            case XREF:
                queryField = getQueryFieldName(attr) + "." + getQueryFieldName(attr.getRefEntity().getLabelAttribute()) + ".ngram";
                queryBuilder = QueryBuilders.nestedQuery(getQueryFieldName(attr), QueryBuilders.queryStringQuery(queryField + ":(" + queryValue + ")"), ScoreMode.Max);
                break;
            default:
                throw new UnexpectedEnumException(dataType);
        }
    }
    return queryBuilder;
}

Example 34 with UnexpectedEnumException

use of org.molgenis.util.UnexpectedEnumException in project molgenis by molgenis.

the class QueryGenerator method createQueryClauseEqualsValue.

private QueryBuilder createQueryClauseEqualsValue(QueryRule queryRule, EntityType entityType) {
    List<Attribute> attributePath = getAttributePath(queryRule.getField(), entityType);
    Attribute attr = attributePath.get(attributePath.size() - 1);
    Object queryValue = getQueryValue(attr, queryRule.getValue());
    String fieldName = getQueryFieldName(attributePath);
    AttributeType attrType = attr.getDataType();
    switch(attrType) {
        case BOOL:
        case DATE:
        case DATE_TIME:
        case DECIMAL:
        case EMAIL:
        case ENUM:
        case HTML:
        case HYPERLINK:
        case INT:
        case LONG:
        case SCRIPT:
        case STRING:
        case TEXT:
            if (useNotAnalyzedField(attr)) {
                fieldName = fieldName + '.' + FIELD_NOT_ANALYZED;
            }
            return nestedQueryBuilder(attributePath, QueryBuilders.termQuery(fieldName, queryValue));
        case CATEGORICAL:
        case CATEGORICAL_MREF:
        case XREF:
        case MREF:
        case FILE:
        case ONE_TO_MANY:
            if (attributePath.size() > 1) {
                throw new MolgenisQueryException("Can not filter on references deeper than 1.");
            }
            Attribute refIdAttr = attr.getRefEntity().getIdAttribute();
            List<Attribute> refAttributePath = concat(attributePath.stream(), of(refIdAttr)).collect(toList());
            String indexFieldName = getQueryFieldName(refAttributePath);
            if (useNotAnalyzedField(refIdAttr)) {
                indexFieldName = indexFieldName + '.' + FIELD_NOT_ANALYZED;
            }
            return QueryBuilders.nestedQuery(fieldName, QueryBuilders.termQuery(indexFieldName, queryValue), ScoreMode.Avg);
        case COMPOUND:
            throw new MolgenisQueryException(format("Illegal attribute type [%s]", attrType.toString()));
        default:
            throw new UnexpectedEnumException(attrType);
    }
}

Example 35 with UnexpectedEnumException

use of org.molgenis.util.UnexpectedEnumException in project molgenis by molgenis.

the class QueryGenerator method createQueryClauseFuzzyMatch.

private QueryBuilder createQueryClauseFuzzyMatch(QueryRule queryRule, EntityType entityType) {
    String queryField = queryRule.getField();
    Object queryValue = queryRule.getValue();
    QueryBuilder queryBuilder;
    if (queryValue == null)
        throw new MolgenisQueryException("Query value cannot be null");
    if (queryField == null) {
        queryBuilder = QueryBuilders.matchQuery("_all", queryValue);
    } else {
        Attribute attr = entityType.getAttribute(queryField);
        if (attr == null) {
            throw new UnknownAttributeException(entityType, queryField);
        }
        // construct query part
        AttributeType dataType = attr.getDataType();
        switch(dataType) {
            case DATE:
            case DATE_TIME:
            case DECIMAL:
            case EMAIL:
            case ENUM:
            case HTML:
            case HYPERLINK:
            case INT:
            case LONG:
            case SCRIPT:
            case STRING:
            case TEXT:
                queryBuilder = QueryBuilders.queryStringQuery(getQueryFieldName(attr) + ":(" + queryValue + ")");
                break;
            case MREF:
            case XREF:
            case CATEGORICAL:
            case CATEGORICAL_MREF:
            case ONE_TO_MANY:
            case FILE:
                queryField = getQueryFieldName(attr) + "." + getQueryFieldName(attr.getRefEntity().getLabelAttribute());
                queryBuilder = QueryBuilders.nestedQuery(getQueryFieldName(attr), QueryBuilders.queryStringQuery(queryField + ":(" + queryValue + ")"), ScoreMode.Max);
                break;
            case BOOL:
            case COMPOUND:
                throw new MolgenisQueryException("Illegal data type [" + dataType + "] for operator [" + QueryRule.Operator.FUZZY_MATCH + "]");
            default:
                throw new UnexpectedEnumException(dataType);
        }
    }
    return queryBuilder;
}