Examples with UnexpectedEnumException org.molgenis.util.UnexpectedEnumException used on opensource projects

Example 26 with UnexpectedEnumException

use of org.molgenis.util.UnexpectedEnumException in project molgenis by molgenis.

the class EntityUtils method getTypedValue.

/**
 * Convert a string value to a typed value based on the attribute data type.
 *
 * @param valueStr      string value
 * @param attr          attribute
 * @param entityManager entity manager used to convert referenced entity values
 * @return typed value
 */
public static Object getTypedValue(String valueStr, Attribute attr, EntityManager entityManager) {
    if (valueStr == null)
        return null;
    switch(attr.getDataType()) {
        case BOOL:
            return Boolean.valueOf(valueStr);
        case CATEGORICAL:
        case FILE:
        case XREF:
            EntityType xrefEntity = attr.getRefEntity();
            Object xrefIdValue = getTypedValue(valueStr, xrefEntity.getIdAttribute(), entityManager);
            return entityManager.getReference(xrefEntity, xrefIdValue);
        case CATEGORICAL_MREF:
        case MREF:
        case ONE_TO_MANY:
            EntityType mrefEntity = attr.getRefEntity();
            List<String> mrefIdStrValues = ListEscapeUtils.toList(valueStr);
            return mrefIdStrValues.stream().map(mrefIdStrValue -> getTypedValue(mrefIdStrValue, mrefEntity.getIdAttribute(), entityManager)).map(mrefIdValue -> entityManager.getReference(mrefEntity, mrefIdValue)).collect(toList());
        case COMPOUND:
            throw new IllegalArgumentException("Compound attribute has no value");
        case DATE:
            try {
                return parseLocalDate(valueStr);
            } catch (DateTimeParseException e) {
                throw new MolgenisDataException(format(FAILED_TO_PARSE_ATTRIBUTE_AS_DATE_MESSAGE, attr.getName(), valueStr), e);
            }
        case DATE_TIME:
            try {
                return parseInstant(valueStr);
            } catch (DateTimeParseException e) {
                throw new MolgenisDataException(format(FAILED_TO_PARSE_ATTRIBUTE_AS_DATETIME_MESSAGE, attr.getName(), valueStr), e);
            }
        case DECIMAL:
            return Double.valueOf(valueStr);
        case EMAIL:
        case ENUM:
        case HTML:
        case HYPERLINK:
        case SCRIPT:
        case STRING:
        case TEXT:
            return valueStr;
        case INT:
            return Integer.valueOf(valueStr);
        case LONG:
            return Long.valueOf(valueStr);
        default:
            throw new UnexpectedEnumException(attr.getDataType());
    }
}

Example 27 with UnexpectedEnumException

use of org.molgenis.util.UnexpectedEnumException in project molgenis by molgenis.

the class EntityUtils method hashCode.

public static int hashCode(Entity entity) {
    int h = 0;
    for (Attribute attr : entity.getEntityType().getAtomicAttributes()) {
        int hValue = 0;
        String attrName = attr.getName();
        switch(attr.getDataType()) {
            case BOOL:
                hValue = Objects.hashCode(entity.getBoolean(attrName));
                break;
            case CATEGORICAL:
            case FILE:
            case XREF:
                Entity xrefValue = entity.getEntity(attrName);
                Object xrefIdValue = xrefValue != null ? xrefValue.getIdValue() : null;
                hValue = Objects.hashCode(xrefIdValue);
                break;
            case CATEGORICAL_MREF:
            case ONE_TO_MANY:
            case MREF:
                for (Entity mrefValue : entity.getEntities(attrName)) {
                    Object mrefIdValue = mrefValue != null ? mrefValue.getIdValue() : null;
                    hValue += Objects.hashCode(mrefIdValue);
                }
                break;
            case COMPOUND:
                throw new RuntimeException(format("Invalid data type [%s]", attr.getDataType()));
            case DATE:
                hValue = Objects.hashCode(entity.getLocalDate(attrName));
                break;
            case DATE_TIME:
                hValue = Objects.hashCode(entity.getInstant(attrName));
                break;
            case DECIMAL:
                hValue = Objects.hashCode(entity.getDouble(attrName));
                break;
            case EMAIL:
            case ENUM:
            case HTML:
            case HYPERLINK:
            case SCRIPT:
            case STRING:
            case TEXT:
                hValue = Objects.hashCode(entity.getString(attrName));
                break;
            case INT:
                hValue = Objects.hashCode(entity.getInt(attrName));
                break;
            case LONG:
                hValue = Objects.hashCode(entity.getLong(attrName));
                break;
            default:
                throw new UnexpectedEnumException(attr.getDataType());
        }
        h += Objects.hashCode(attrName) ^ hValue;
    }
    int result = entity.getEntityType().getId().hashCode();
    return 31 * result + h;
}

Example 28 with UnexpectedEnumException

use of org.molgenis.util.UnexpectedEnumException in project molgenis by molgenis.

the class DataExplorerController method download.

@PostMapping("/download")
public void download(@RequestParam("dataRequest") String dataRequestStr, HttpServletResponse response) throws IOException {
    DataExplorerDownloadHandler download = new DataExplorerDownloadHandler(dataService, attrMetaFactory);
    // Workaround because binding with @RequestBody is not possible:
    // http://stackoverflow.com/a/9970672
    dataRequestStr = URLDecoder.decode(dataRequestStr, "UTF-8");
    LOG.info("Download request: [" + dataRequestStr + "]");
    DataRequest dataRequest = gson.fromJson(dataRequestStr, DataRequest.class);
    final String fileName = getDownloadFilename(dataRequest.getEntityName(), LocalDateTime.now(), dataRequest.getDownloadType());
    ServletOutputStream outputStream;
    switch(dataRequest.getDownloadType()) {
        case DOWNLOAD_TYPE_CSV:
            response.setContentType("text/csv");
            response.addHeader("Content-Disposition", "attachment; filename=\"" + fileName + "\"");
            outputStream = response.getOutputStream();
            download.writeToCsv(dataRequest, outputStream, ',');
            break;
        case DOWNLOAD_TYPE_XLSX:
            response.setContentType("application/vnd.openxmlformats-officedocument.spreadsheetml.sheet");
            response.addHeader("Content-Disposition", "attachment; filename=\"" + fileName + "\"");
            outputStream = response.getOutputStream();
            download.writeToExcel(dataRequest, outputStream);
            break;
        default:
            throw new UnexpectedEnumException(dataRequest.getDownloadType());
    }
}

Example 29 with UnexpectedEnumException

use of org.molgenis.util.UnexpectedEnumException in project molgenis by molgenis.

the class DataExplorerController method getModules.

/**
 * Returns modules configuration for this entity based on current user permissions.
 */
@GetMapping("/modules")
@ResponseBody
public ModulesConfigResponse getModules(@RequestParam("entity") String entityTypeId) {
    boolean modAggregates = dataExplorerSettings.getModAggregates();
    boolean modAnnotators = dataExplorerSettings.getModAnnotators();
    boolean modData = dataExplorerSettings.getModData();
    boolean modReports = dataExplorerSettings.getModReports();
    if (modAggregates) {
        modAggregates = dataService.getCapabilities(entityTypeId).contains(RepositoryCapability.AGGREGATEABLE);
    }
    // set data explorer permission
    Permission pluginPermission = null;
    if (permissionService.hasPermission(new EntityTypeIdentity(entityTypeId), EntityTypePermission.WRITE))
        pluginPermission = WRITE;
    else if (permissionService.hasPermission(new EntityTypeIdentity(entityTypeId), EntityTypePermission.READ))
        pluginPermission = READ;
    else if (permissionService.hasPermission(new EntityTypeIdentity(entityTypeId), EntityTypePermission.COUNT))
        pluginPermission = Permission.COUNT;
    ModulesConfigResponse modulesConfig = new ModulesConfigResponse();
    String aggregatesTitle = messageSource.getMessage("dataexplorer_aggregates_title", new Object[] {}, LocaleContextHolder.getLocale());
    if (pluginPermission != null) {
        switch(pluginPermission) {
            case COUNT:
                if (modAggregates) {
                    modulesConfig.add(new ModuleConfig("aggregates", aggregatesTitle, "grid-icon.png"));
                }
                break;
            case READ:
            case WRITE:
                if (modData) {
                    modulesConfig.add(new ModuleConfig("data", "Data", "grid-icon.png"));
                }
                if (modAggregates) {
                    modulesConfig.add(new ModuleConfig("aggregates", aggregatesTitle, "aggregate-icon.png"));
                }
                if (modAnnotators && pluginPermission == WRITE) {
                    modulesConfig.add(new ModuleConfig("annotators", "Annotators", "annotator-icon.png"));
                }
                if (modReports) {
                    String modEntitiesReportName = dataExplorerSettings.getEntityReport(entityTypeId);
                    if (modEntitiesReportName != null) {
                        modulesConfig.add(new ModuleConfig("entitiesreport", modEntitiesReportName, "report-icon.png"));
                    }
                }
                break;
            case NONE:
                break;
            default:
                throw new UnexpectedEnumException(pluginPermission);
        }
    }
    return modulesConfig;
}

Example 30 with UnexpectedEnumException

use of org.molgenis.util.UnexpectedEnumException in project molgenis by molgenis.

the class ExcelSheetWriter method toValue.

private String toValue(Object obj) {
    String value;
    if (obj == null) {
        value = null;
    } else if (obj instanceof Entity) {
        if (getEntityWriteMode() != null) {
            switch(getEntityWriteMode()) {
                case ENTITY_IDS:
                    value = ((Entity) obj).getIdValue().toString();
                    break;
                case ENTITY_LABELS:
                    Object labelValue = ((Entity) obj).getLabelValue();
                    value = labelValue != null ? labelValue.toString() : null;
                    break;
                default:
                    throw new UnexpectedEnumException(getEntityWriteMode());
            }
        } else {
            Object labelValue = ((Entity) obj).getLabelValue();
            value = labelValue != null ? labelValue.toString() : null;
        }
    } else if (obj instanceof Iterable<?>) {
        StringBuilder strBuilder = new StringBuilder();
        for (Object listItem : (Iterable<?>) obj) {
            if (strBuilder.length() > 0)
                strBuilder.append(',');
            strBuilder.append(toValue(listItem));
        }
        // TODO apply cell processors to list elements?
        value = strBuilder.toString();
    } else {
        value = obj.toString();
    }
    return AbstractCellProcessor.processCell(value, false, cellProcessors);
}