Examples with AnnotationNotFoundException org.monarchinitiative.loinc2hpo.exception.AnnotationNotFoundException used on opensource projects

Example 1 with AnnotationNotFoundException

use of org.monarchinitiative.loinc2hpo.exception.AnnotationNotFoundException in project loinc2hpo by monarch-initiative.

the class ObservationAnalysisFromCodedValues method getHPOforObservation.

@Override
public HpoTermId4LoincTest getHPOforObservation() throws AmbiguousResultsFoundException, UnrecognizedCodeException, AnnotationNotFoundException {
    if (annotationMap.get(loincId) == null)
        throw new AnnotationNotFoundException();
    Set<HpoTermId4LoincTest> results = new HashSet<>();
    codedValue.getCoding().stream().filter(p -> annotationMap.get(loincId).getCodes().contains(new Code(p))).forEach(p -> results.add(annotationMap.get(loincId).loincInterpretationToHPO(new Code(p))));
    if (results.size() > 1) {
        throw new AmbiguousResultsFoundException();
    }
    if (results.size() == 1) {
        return results.iterator().next();
    } else {
        throw new UnrecognizedCodeException();
    }
}