Examples with DbXref org.nextprot.api.core.domain.DbXref used on opensource projects

Example 16 with DbXref

use of org.nextprot.api.core.domain.DbXref in project nextprot-api by calipho-sib.

the class DbXrefURLResolverDelegateTest method testUnknownDbNameAndEmptyURL.

@Test(expected = UnresolvedXrefURLException.class)
public void testUnknownDbNameAndEmptyURL() throws Exception {
    DbXref xref = createDbXref("babebibobu", "unknownDb", "");
    resolver.resolve(xref);
}

Example 17 with DbXref

use of org.nextprot.api.core.domain.DbXref in project nextprot-api by calipho-sib.

the class DbXrefURLResolverDelegateTest method testResolveWithUrlEncodingShouldNotThrowUnresolvedXrefURLException.

@Test
public void testResolveWithUrlEncodingShouldNotThrowUnresolvedXrefURLException() throws Exception {
    DbXref xref = createDbXref("Thymosin_%CE%B11", "UniPathway", "http://en.wikipedia.org/wiki/%s");
    // resolver.resolve(xref, "http://en.wikipedia.org/wiki/Thymosin_%CE%B11");
    resolver.resolve(xref);
}

Example 18 with DbXref

use of org.nextprot.api.core.domain.DbXref in project nextprot-api by calipho-sib.

the class DbXrefURLResolverDelegateTest method createDbXref.

public static DbXref createDbXref(String accession, String dbName, String linkURL) {
    DbXref xref = new DbXref();
    xref.setAccession(accession);
    xref.setDatabaseName(dbName);
    xref.setLinkUrl(linkURL);
    return xref;
}

Example 19 with DbXref

use of org.nextprot.api.core.domain.DbXref in project nextprot-api by calipho-sib.

the class DbXrefURLResolverDelegateTest method testResolveFMA.

@Test
public void testResolveFMA() throws Exception {
    DbXref xref = createDbXref("FMA:62955", "FMA", "http://purl.obolibrary.org/obo/%s");
    Assert.assertEquals("http://purl.obolibrary.org/obo/FMA_62955", resolver.resolve(xref));
    Assert.assertEquals("http://purl.obolibrary.org/obo/%s", xref.getLinkUrl());
}

Example 20 with DbXref

use of org.nextprot.api.core.domain.DbXref in project nextprot-api by calipho-sib.

the class DbXrefURLResolverDelegateTest method testResolveHSSP.

@Test
public void testResolveHSSP() throws Exception {
    DbXref xref = createDbXref("PS50853", "HSSP", "%s");
    Assert.assertEquals("http://ps50853", resolver.resolve(xref));
    Assert.assertEquals("http://%s", xref.getLinkUrl());
}