Examples with DbXref org.nextprot.api.core.domain.DbXref used on opensource projects

Example 36 with DbXref

use of org.nextprot.api.core.domain.DbXref in project nextprot-api by calipho-sib.

the class DbXrefURLResolverDelegateTest method testResolveWithAccessionRuleBase.

@Test
public void testResolveWithAccessionRuleBase() throws Exception {
    DbXref xref = createDbXref("RU000461", "RuleBase", "http://www.uniprot.org/unirule/%s");
    Assert.assertEquals("http://www.uniprot.org/unirule/RU000461", resolver.resolve(xref));
}

Example 37 with DbXref

use of org.nextprot.api.core.domain.DbXref in project nextprot-api by calipho-sib.

the class DbXrefURLResolverDelegateTest method testResolvePIR.

// entry/NX_P51610/xref.json
@Test
public void testResolvePIR() throws Exception {
    DbXref xref = createDbXref("babebibobu", "PIR", "http://pir.georgetown.edu/cgi-bin/nbrfget?uid=%s");
    xref.setProperties(Collections.singletonList(createDbXrefProperty("entry name", "A40718")));
    Assert.assertEquals("http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A40718", resolver.resolve(xref));
    Assert.assertEquals("http://pir.georgetown.edu/cgi-bin/nbrfget?uid=%s", xref.getLinkUrl());
}

Example 38 with DbXref

use of org.nextprot.api.core.domain.DbXref in project nextprot-api by calipho-sib.

the class DbXrefURLResolverDelegateTest method testResolvePDB.

// entry/NX_P01308/xref.json
@Test
public void testResolvePDB() throws Exception {
    DbXref xref = createDbXref("1A7F", "PDB", "whatever");
    Assert.assertEquals("https://www.rcsb.org/pdb/explore/explore.do?pdbId=1A7F", resolver.resolve(xref));
    Assert.assertEquals("https://www.rcsb.org/pdb/explore/explore.do?pdbId=%s", xref.getLinkUrl());
}

Example 39 with DbXref

use of org.nextprot.api.core.domain.DbXref in project nextprot-api by calipho-sib.

the class EmblXrefURLResolverTest method testResolveEmbl.

@Test
public void testResolveEmbl() throws Exception {
    DbXref xref = DbXrefURLResolverDelegateTest.createDbXref("AF009225", "EMBL", "http://www.ebi.ac.uk/ena/data/view/%s");
    Assert.assertEquals("http://www.ebi.ac.uk/ena/data/view/AF009225", resolver.resolve(xref));
}

Example 40 with DbXref

use of org.nextprot.api.core.domain.DbXref in project nextprot-api by calipho-sib.

the class GenevisibleXrefURLResolverTest method testResolve2.

@Test
public void testResolve2() throws Exception {
    DbXref xref = DbXrefURLResolverDelegateTest.createDbXref("P51612", "Genevisible", "whatever");
    String url = new DbXrefURLResolverDelegate().resolve(xref);
    Assert.assertEquals("https://genevisible.com/tissues/HS/UniProt/P51612", url);
}