Examples with DbXref org.nextprot.api.core.domain.DbXref used on opensource projects

Example 26 with DbXref

use of org.nextprot.api.core.domain.DbXref in project nextprot-api by calipho-sib.

the class DbXrefURLResolverDelegateTest method testResolveEmbl.

@Test
public void testResolveEmbl() throws Exception {
    DbXref xref = createDbXref("AF009225", "EMBL", "http://www.ebi.ac.uk/ena/data/view/%s");
    Assert.assertEquals("http://www.ebi.ac.uk/ena/data/view/AF009225", resolver.resolve(xref));
    Assert.assertEquals("http://www.ebi.ac.uk/ena/data/view/%s", xref.getLinkUrl());
}

Example 27 with DbXref

use of org.nextprot.api.core.domain.DbXref in project nextprot-api by calipho-sib.

the class DbXrefURLResolverDelegateTest method createDbXrefWithEntry.

public static DbXref createDbXrefWithEntry(String entryAccession, String accession, String dbName, String linkURL) {
    DbXref xref = createDbXref(accession, dbName, linkURL);
    xref.setProteinAccessionReferer(entryAccession);
    return xref;
}

Example 28 with DbXref

use of org.nextprot.api.core.domain.DbXref in project nextprot-api by calipho-sib.

the class DbXrefURLResolverDelegateTest method testResolveHSSPWithPDB.

@Test
public void testResolveHSSPWithPDB() throws Exception {
    DbXref xref = createDbXref("PS50853", "HSSP", "%s");
    xref.setProperties(Collections.singletonList(createDbXrefProperty("PDB accession", "1A7F")));
    Assert.assertEquals("http://1a7f", resolver.resolve(xref));
    Assert.assertEquals("http://%s", xref.getLinkUrl());
}

Example 29 with DbXref

use of org.nextprot.api.core.domain.DbXref in project nextprot-api by calipho-sib.

the class DbXrefURLResolverDelegateTest method testResolveWEBINFO.

@Test
public void testResolveWEBINFO() throws Exception {
    DbXref xref = createDbXref("babebibobu", "WEBINFO", "");
    Assert.assertEquals("babebibobu", resolver.resolve(xref));
    Assert.assertEquals("", xref.getLinkUrl());
}

Example 30 with DbXref

use of org.nextprot.api.core.domain.DbXref in project nextprot-api by calipho-sib.

the class DbXrefURLResolverDelegateTest method testResolveProsite.

@Test
public void testResolveProsite() throws Exception {
    DbXref xref = createDbXref("PS50853", "PROSITE", "whatever");
    Assert.assertEquals("http://prosite.expasy.org/cgi-bin/prosite/prosite-search-ac?PS50853", resolver.resolve(xref));
    Assert.assertEquals("http://prosite.expasy.org/cgi-bin/prosite/prosite-search-ac?%s", xref.getLinkUrl());
}