Examples with Annotation org.nextprot.api.core.domain.annotation.Annotation used on opensource projects

Example 71 with Annotation

use of org.nextprot.api.core.domain.annotation.Annotation in project nextprot-api by calipho-sib.

the class ByAnnotationSubjectComparatorTest method compareAnnotationsCannotFindSubjectAnnot.

@Test(expected = NextProtException.class)
public void compareAnnotationsCannotFindSubjectAnnot() throws Exception {
    ByAnnotationSubjectComparator comparator = new ByAnnotationSubjectComparator(new HashMap<>());
    Annotation a1 = new Annotation();
    a1.setSubjectComponents(Collections.singletonList("hash1"));
    Annotation a2 = new Annotation();
    a2.setSubjectComponents(Collections.singletonList("hash2"));
    int cmp = comparator.compare(a1, a2);
    Assert.assertEquals(0, cmp);
}

Example 72 with Annotation

use of org.nextprot.api.core.domain.annotation.Annotation in project nextprot-api by calipho-sib.

the class ByAnnotationSubjectComparatorTest method mockAnnotation.

public static Annotation mockAnnotation(AnnotationCategory annotationCategory, String annotationHash) {
    Annotation annotation = Mockito.mock(Annotation.class);
    when(annotation.getAPICategory()).thenReturn(annotationCategory);
    when(annotation.getAnnotationHash()).thenReturn(annotationHash);
    return annotation;
}

Example 73 with Annotation

use of org.nextprot.api.core.domain.annotation.Annotation in project nextprot-api by calipho-sib.

the class ByAnnotationSubjectComparatorTest method compareAnnotationsUndefinedSubjectComponents.

@Test
public void compareAnnotationsUndefinedSubjectComponents() throws Exception {
    ByAnnotationSubjectComparator comparator = new ByAnnotationSubjectComparator(new HashMap<>());
    Annotation a1 = new Annotation();
    Annotation a2 = new Annotation();
    int cmp = comparator.compare(a1, a2);
    Assert.assertEquals(0, cmp);
}

Example 74 with Annotation

use of org.nextprot.api.core.domain.annotation.Annotation in project nextprot-api by calipho-sib.

the class ByAnnotationSubjectComparatorTest method compareAnnotations.

@Test
public void compareAnnotations() throws Exception {
    ByAnnotationSubjectComparator comparator = new ByAnnotationSubjectComparator(newHashMap(mockAnnotation(AnnotationCategory.VARIANT, "hash1"), mockAnnotation(AnnotationCategory.MUTAGENESIS, "hash2")), mockHashableComparator(0));
    Annotation a1 = new Annotation();
    a1.setSubjectComponents(Collections.singletonList("hash1"));
    Annotation a2 = new Annotation();
    a2.setSubjectComponents(Collections.singletonList("hash2"));
    int cmp = comparator.compare(a1, a2);
    Assert.assertEquals(0, cmp);
}

Example 75 with Annotation

use of org.nextprot.api.core.domain.annotation.Annotation in project nextprot-api by calipho-sib.

the class AnnotationClusterTest method mockAnnotation.

private static Annotation mockAnnotation(AnnotationCategory cat) {
    Annotation annotation = Mockito.mock(Annotation.class);
    when(annotation.getAPICategory()).thenReturn(cat);
    return annotation;
}