Examples with Annotation org.nextprot.api.core.domain.annotation.Annotation used on opensource projects

Example 96 with Annotation

use of org.nextprot.api.core.domain.annotation.Annotation in project nextprot-api by calipho-sib.

the class ObjectAnnotationSimilarityPredicateTest method shouldBeSimilarBasedOnBioObjectAccessionEquals.

@Test
public void shouldBeSimilarBasedOnBioObjectAccessionEquals() throws Exception {
    AnnotationSimilarityPredicate predicateBasedOnBioObjectAccessionEquals = new ObjectSimilarityPredicate(Annotation::getBioObject, (o1, o2) -> Objects.equals(((BioObject) o1).getAccession(), ((BioObject) o2).getAccession()));
    Assert.assertTrue(predicateBasedOnBioObjectAccessionEquals.isSimilar(mockAnnotationWithBioObject("toto", BioObject.BioType.CHEMICAL), mockAnnotationWithBioObject("toto", BioObject.BioType.GROUP)));
}

Example 97 with Annotation

use of org.nextprot.api.core.domain.annotation.Annotation in project nextprot-api by calipho-sib.

the class ObjectAnnotationSimilarityPredicateTest method mockAnnotationWithBioObject.

public static Annotation mockAnnotationWithBioObject(String accession, BioObject.BioType type) {
    Annotation annotation = Mockito.mock(Annotation.class);
    BioObject bioObject = Mockito.mock(BioObject.class);
    when(bioObject.getAccession()).thenReturn(accession);
    when(bioObject.getBioType()).thenReturn(type);
    when(annotation.getBioObject()).thenReturn(bioObject);
    return annotation;
}

Example 98 with Annotation

use of org.nextprot.api.core.domain.annotation.Annotation in project nextprot-api by calipho-sib.

the class AnnotationSimilarityPredicateTest method mockAnnotation.

private static Annotation mockAnnotation(String accession, String database) {
    Annotation annot = Mockito.mock(Annotation.class);
    BioObject bo = Mockito.mock(BioObject.class);
    Mockito.when(bo.getAccession()).thenReturn(accession);
    Mockito.when(bo.getDatabase()).thenReturn(database);
    Mockito.when(annot.getBioObject()).thenReturn(bo);
    return annot;
}

Example 99 with Annotation

use of org.nextprot.api.core.domain.annotation.Annotation in project nextprot-api by calipho-sib.

the class AnnotationTest method testTwoNegative.

@Test
public void testTwoNegative() {
    Annotation a = new Annotation();
    List<AnnotationEvidence> evidences = new ArrayList<>();
    evidences.add(buildEvidence("negative"));
    evidences.add(buildEvidence("negative"));
    a.setEvidences(evidences);
    Assert.assertTrue(a.isExpressionLevelDetected().isPresent());
    Assert.assertTrue(!a.isExpressionLevelDetected().get());
}

Example 100 with Annotation

use of org.nextprot.api.core.domain.annotation.Annotation in project nextprot-api by calipho-sib.

the class AnnotationTest method testOneNegative.

@Test
public void testOneNegative() {
    Annotation a = new Annotation();
    List<AnnotationEvidence> evidences = new ArrayList<>();
    evidences.add(buildEvidence("negative"));
    a.setEvidences(evidences);
    Assert.assertTrue(a.isExpressionLevelDetected().isPresent());
    Assert.assertTrue(!a.isExpressionLevelDetected().get());
}