Examples with Annotation org.nextprot.api.core.domain.annotation.Annotation used on opensource projects

Example 91 with Annotation

use of org.nextprot.api.core.domain.annotation.Annotation in project nextprot-api by calipho-sib.

the class ByIsoformPositionComparatorTest method assertExpectedIds.

private static void assertExpectedIds(List<Annotation> observedAnnots, long... expectedAnnotIds) {
    Assert.assertEquals(observedAnnots.size(), expectedAnnotIds.length);
    int i = 0;
    for (Annotation observedAnnot : observedAnnots) {
        Assert.assertEquals(expectedAnnotIds[i++], observedAnnot.getAnnotationId());
    }
}

Example 92 with Annotation

use of org.nextprot.api.core.domain.annotation.Annotation in project nextprot-api by calipho-sib.

the class AnnotationFinderTest method shouldFindOneAnnotIfMultipleMatches.

@Test
public void shouldFindOneAnnotIfMultipleMatches() throws Exception {
    AnnotationFinder finder = new AnnotationFinder() {

        @Override
        protected Optional<AnnotationSimilarityPredicate> newPredicate(Annotation annotation) {
            return Optional.of(newApiCatCriteria());
        }
    };
    Annotation annot = new Annotation();
    annot.setAnnotationName("joe");
    annot.setAnnotationCategory(AnnotationCategory.VARIANT);
    Optional<Annotation> optAnnotation = finder.find(mockAnnotation(AnnotationCategory.VARIANT), Arrays.asList(annot, mockAnnotation(AnnotationCategory.VARIANT)));
    Assert.assertTrue(optAnnotation.isPresent());
    Assert.assertEquals(AnnotationCategory.VARIANT, optAnnotation.get().getAPICategory());
    Assert.assertEquals("joe", optAnnotation.get().getAnnotationName());
}

Example 93 with Annotation

use of org.nextprot.api.core.domain.annotation.Annotation in project nextprot-api by calipho-sib.

the class ObjectAnnotationSimilarityPredicateTest method mockAnnotation.

public static Annotation mockAnnotation(AnnotationCategory cat) {
    Annotation annotation = Mockito.mock(Annotation.class);
    when(annotation.getAPICategory()).thenReturn(cat);
    return annotation;
}

Example 94 with Annotation

use of org.nextprot.api.core.domain.annotation.Annotation in project nextprot-api by calipho-sib.

the class ObjectAnnotationSimilarityPredicateTest method shouldGetProperAnnotationObject.

@Test
public void shouldGetProperAnnotationObject() throws Exception {
    ObjectSimilarityPredicate predicate = new ObjectSimilarityPredicate(Annotation::getAPICategory);
    Annotation annot = mockAnnotation(AnnotationCategory.VARIANT);
    Assert.assertEquals(AnnotationCategory.VARIANT, predicate.getObject(annot));
}

Example 95 with Annotation

use of org.nextprot.api.core.domain.annotation.Annotation in project nextprot-api by calipho-sib.

the class ObjectAnnotationSimilarityPredicateTest method shouldBeDifferentBasedOnBioObjectEquals.

@Test
public void shouldBeDifferentBasedOnBioObjectEquals() throws Exception {
    AnnotationSimilarityPredicate predicateBasedOnBioObjectEquals = new ObjectSimilarityPredicate(Annotation::getBioObject);
    Assert.assertFalse(predicateBasedOnBioObjectEquals.isSimilar(mockAnnotationWithBioObject("toto", BioObject.BioType.CHEMICAL), mockAnnotationWithBioObject("toto", BioObject.BioType.GROUP)));
}