Examples with DataAccessRequest org.obiba.mica.access.domain.DataAccessRequest used on opensource projects

Example 11 with DataAccessRequest

use of org.obiba.mica.access.domain.DataAccessRequest in project mica2 by obiba.

the class DataAccessRequestService method save.

public DataAccessRequest save(@NotNull DataAccessRequest request) {
    DataAccessRequest saved = request;
    DataAccessRequest.Status from = null;
    Iterable<Attachment> attachmentsToDelete = null;
    Iterable<Attachment> attachmentsToSave = null;
    if (request.isNew()) {
        setAndLogStatus(saved, DataAccessRequest.Status.OPENED);
        saved.setId(generateId());
        attachmentsToSave = saved.getAttachments();
    } else {
        saved = dataAccessRequestRepository.findOne(request.getId());
        if (saved != null) {
            attachmentsToDelete = Sets.difference(Sets.newHashSet(saved.getAttachments()), Sets.newHashSet(request.getAttachments()));
            attachmentsToSave = Sets.difference(Sets.newHashSet(request.getAttachments()), Sets.newHashSet(saved.getAttachments()));
            from = saved.getStatus();
            // validate the status
            dataAccessRequestUtilService.checkStatusTransition(saved, request.getStatus());
            saved.setStatus(request.getStatus());
            if (request.hasStatusChangeHistory())
                saved.setStatusChangeHistory(request.getStatusChangeHistory());
            // merge beans
            BeanUtils.copyProperties(request, saved, "id", "version", "createdBy", "createdDate", "lastModifiedBy", "lastModifiedDate", "statusChangeHistory");
        } else {
            saved = request;
            setAndLogStatus(saved, DataAccessRequest.Status.OPENED);
        }
    }
    schemaFormContentFileService.save(saved, dataAccessRequestRepository.findOne(request.getId()), String.format("/data-access-request/%s", saved.getId()));
    if (attachmentsToSave != null)
        attachmentsToSave.forEach(a -> {
            fileStoreService.save(a.getId());
            a.setJustUploaded(false);
            attachmentRepository.save(a);
        });
    saved.setLastModifiedDate(DateTime.now());
    dataAccessRequestRepository.saveWithReferences(saved);
    if (attachmentsToDelete != null)
        attachmentsToDelete.forEach(a -> fileStoreService.delete(a.getId()));
    eventBus.post(new DataAccessRequestUpdatedEvent(saved));
    sendNotificationEmails(saved, from);
    return saved;
}

Example 12 with DataAccessRequest

use of org.obiba.mica.access.domain.DataAccessRequest in project mica2 by obiba.

the class DataAccessRequestService method updateStatus.

/**
 * Update the status of the {@link DataAccessRequest} matching the identifier.
 *
 * @param id
 * @param status
 * @throws NoSuchDataAccessRequestException
 */
public DataAccessRequest updateStatus(@NotNull String id, @NotNull DataAccessRequest.Status status) throws NoSuchDataAccessRequestException {
    DataAccessRequest request = findById(id);
    setAndLogStatus(request, status);
    save(request);
    return request;
}

Example 13 with DataAccessRequest

use of org.obiba.mica.access.domain.DataAccessRequest in project mica2 by obiba.

the class DataAccessRequestService method saveAttachments.

public DataAccessRequest saveAttachments(@NotNull DataAccessRequest request) {
    DataAccessRequest saved = findById(request.getId());
    saved.setAttachments(request.getAttachments());
    save(saved);
    sendAttachmentsUpdatedNotificationEmail(request);
    return saved;
}

Example 14 with DataAccessRequest

use of org.obiba.mica.access.domain.DataAccessRequest in project mica2 by obiba.

the class DataAccessRequestDtos method fromDto.

@NotNull
public DataAccessRequest fromDto(@NotNull Mica.DataAccessRequestDto dto) {
    DataAccessRequest.Builder builder = DataAccessRequest.newBuilder();
    builder.applicant(dto.getApplicant()).status(dto.getStatus());
    if (dto.hasContent())
        builder.content(dto.getContent());
    DataAccessRequest request = builder.build();
    if (dto.hasId())
        request.setId(dto.getId());
    if (dto.getAttachmentsCount() > 0) {
        request.setAttachments(dto.getAttachmentsList().stream().map(attachmentDtos::fromDto).collect(Collectors.toList()));
    }
    TimestampsDtos.fromDto(dto.getTimestamps(), request);
    return request;
}

Example 15 with DataAccessRequest

use of org.obiba.mica.access.domain.DataAccessRequest in project mica2 by obiba.

the class ProjectDtos method asDto.

@NotNull
public Mica.ProjectDto asDto(@NotNull Project project, boolean asDraft) {
    Mica.ProjectDto.Builder builder = Mica.ProjectDto.newBuilder().addAllTitle(// 
    localizedStringDtos.asDto(project.getTitle())).addAllSummary(localizedStringDtos.asDto(project.getSummary()));
    if (project.hasModel())
        builder.setContent(JSONUtils.toJSON(project.getModel()));
    if (project.hasDataAccessRequestId()) {
        try {
            DataAccessRequest request = dataAccessRequestService.findById(project.getDataAccessRequestId());
            Mica.DataAccessRequestSummaryDto.Builder darBuilder = Mica.DataAccessRequestSummaryDto.newBuilder();
            darBuilder.setId(project.getDataAccessRequestId());
            darBuilder.setStatus(request.getStatus().name());
            darBuilder.setApplicant(request.getApplicant());
            darBuilder.setViewable(subjectAclService.isPermitted("/data-access-request", "VIEW", request.getId()));
            builder.setRequest(darBuilder);
        } catch (NoSuchElementException e) {
        // ignore
        }
    }
    if (!project.isNew())
        builder.setId(project.getId());
    Mica.PermissionsDto permissionsDto = permissionsDtos.asDto(project);
    if (asDraft) {
        ProjectState projectState = projectService.getEntityState(project.getId());
        // 
        builder.setTimestamps(TimestampsDtos.asDto(project)).setPublished(// 
        projectState.isPublished()).setExtension(Mica.EntityStateDto.projectState, entityStateDtos.asDto(projectState).setPermissions(permissionsDto).build());
    }
    builder.setPermissions(permissionsDto);
    builder.setTimestamps(TimestampsDtos.asDto(project));
    return builder.build();
}