Examples with NetworkState org.obiba.mica.network.domain.NetworkState used on opensource projects

Example 1 with NetworkState

use of org.obiba.mica.network.domain.NetworkState in project mica2 by obiba.

the class NetworkService method removeRoles.

private void removeRoles(@NotNull Network network, Iterable<String> roles) {
    saveInternal(network, String.format("Removed roles: %s", Joiner.on(", ").join(roles)), false);
    NetworkState state = findStateById(network.getId());
    if (state.isPublished()) {
        processNetworkForPublishedNumberOfStudies(network);
        publishState(network.getId());
        eventBus.post(new NetworkPublishedEvent(network, getCurrentUsername(), PublishCascadingScope.NONE));
    }
}

Example 2 with NetworkState

use of org.obiba.mica.network.domain.NetworkState in project mica2 by obiba.

the class NetworkService method saveInternal.

@SuppressWarnings("OverlyLongMethod")
private void saveInternal(@NotNull Network network, String comment, boolean cascade) {
    Network saved = network;
    if (network.isNew()) {
        generateId(saved);
    } else {
        saved = networkRepository.findOne(network.getId());
        if (saved != null) {
            BeanUtils.copyProperties(network, saved, "id", "version", "createdBy", "createdDate", "lastModifiedBy", "lastModifiedDate");
        } else {
            saved = network;
        }
    }
    if (saved.getLogo() != null && saved.getLogo().isJustUploaded()) {
        fileStoreService.save(saved.getLogo().getId());
        saved.getLogo().setJustUploaded(false);
    }
    ImmutableSet<String> invalidRoles = ImmutableSet.copyOf(Sets.difference(saved.membershipRoles(), Sets.newHashSet(micaConfigService.getConfig().getRoles())));
    for (String r : invalidRoles) {
        saved.removeRole(r);
    }
    NetworkState networkState = findEntityState(network, () -> {
        NetworkState defaultState = new NetworkState();
        defaultState.setName(network.getName());
        return defaultState;
    });
    if (!network.isNew())
        ensureGitRepository(networkState);
    networkState.incrementRevisionsAhead();
    networkStateRepository.save(networkState);
    saved.setLastModifiedDate(DateTime.now());
    if (cascade)
        networkRepository.saveWithReferences(saved);
    else
        networkRepository.save(saved);
    eventBus.post(new NetworkUpdatedEvent(saved));
    gitService.save(saved, comment);
}

Example 3 with NetworkState

use of org.obiba.mica.network.domain.NetworkState in project mica2 by obiba.

the class NetworkService method index.

/**
 * Index a specific {@link Network} without updating it.
 *
 * @param id
 * @throws NoSuchNetworkException
 */
public void index(@NotNull String id) throws NoSuchNetworkException {
    NetworkState networkState = getEntityState(id);
    Network network = findById(id);
    eventBus.post(new NetworkUpdatedEvent(network));
    processNetworkForPublishedNumberOfStudies(network);
    if (networkState.isPublished())
        eventBus.post(new NetworkPublishedEvent(network, getCurrentUsername()));
    else
        eventBus.post(new NetworkUnpublishedEvent(network));
}

Example 4 with NetworkState

use of org.obiba.mica.network.domain.NetworkState in project mica2 by obiba.

the class NetworkDtos method asDtoBuilder.

@NotNull
Mica.NetworkDto.Builder asDtoBuilder(@NotNull Network network, boolean asDraft) {
    Mica.NetworkDto.Builder builder = Mica.NetworkDto.newBuilder();
    if (network.hasModel())
        builder.setContent(JSONUtils.toJSON(network.getModel()));
    // 
    builder.setId(network.getId()).addAllName(// 
    localizedStringDtos.asDto(network.getName())).addAllDescription(// 
    localizedStringDtos.asDto(network.getDescription())).addAllAcronym(localizedStringDtos.asDto(network.getAcronym()));
    Mica.PermissionsDto permissionsDto = permissionsDtos.asDto(network);
    NetworkState networkState = networkService.getEntityState(network.getId());
    builder.setPublished(networkState.isPublished());
    if (asDraft) {
        // 
        builder.setTimestamps(TimestampsDtos.asDto(network)).setPublished(// 
        networkState.isPublished()).setExtension(Mica.EntityStateDto.state, entityStateDtos.asDto(networkState).setPermissions(permissionsDto).build());
    }
    builder.setPermissions(permissionsDto);
    List<String> roles = micaConfigService.getConfig().getRoles();
    if (network.getMemberships() != null) {
        List<Mica.MembershipsDto> memberships = network.getMemberships().entrySet().stream().filter(e -> roles.contains(e.getKey())).map(e -> Mica.MembershipsDto.newBuilder().setRole(e.getKey()).addAllMembers(e.getValue().stream().map(m -> personDtos.asDto(m.getPerson(), asDraft)).collect(toList())).build()).collect(toList());
        builder.addAllMemberships(memberships);
    }
    List<BaseStudy> publishedStudies = publishedStudyService.findByIds(network.getStudyIds());
    Set<String> publishedStudyIds = publishedStudies.stream().map(AbstractGitPersistable::getId).collect(Collectors.toSet());
    Sets.SetView<String> unpublishedStudyIds = Sets.difference(ImmutableSet.copyOf(network.getStudyIds().stream().filter(sId -> asDraft && subjectAclService.isPermitted("/draft/individual-study", "VIEW", sId) || subjectAclService.isAccessible("/individual-study", sId)).collect(toList())), publishedStudyIds);
    if (!publishedStudies.isEmpty()) {
        Map<String, Long> datasetVariableCounts = asDraft ? null : datasetVariableService.getCountByStudyIds(Lists.newArrayList(publishedStudyIds));
        publishedStudies.forEach(study -> {
            builder.addStudyIds(study.getId());
            builder.addStudySummaries(studySummaryDtos.asDtoBuilder(study, true, datasetVariableCounts == null ? 0 : datasetVariableCounts.get(study.getId())));
        });
    }
    unpublishedStudyIds.forEach(studyId -> {
        try {
            builder.addStudySummaries(studySummaryDtos.asDto(studyId));
            builder.addStudyIds(studyId);
        } catch (NoSuchEntityException e) {
            log.warn("Study not found in network {}: {}", network.getId(), studyId);
        // ignore
        }
    });
    if (network.getLogo() != null) {
        builder.setLogo(attachmentDtos.asDto(network.getLogo()));
    }
    network.getNetworkIds().stream().filter(nId -> asDraft && subjectAclService.isPermitted("/draft/network", "VIEW", nId) || subjectAclService.isAccessible("/network", nId)).forEach(nId -> {
        try {
            builder.addNetworkSummaries(networkSummaryDtos.asDtoBuilder(nId, asDraft));
            builder.addNetworkIds(nId);
        } catch (NoSuchEntityException e) {
            log.warn("Network not found in network {}: {}", network.getId(), nId);
        // ignore
        }
    });
    return builder;
}

Example 5 with NetworkState

use of org.obiba.mica.network.domain.NetworkState in project mica2 by obiba.

the class NetworkSummaryDtos method asDto.

@NotNull
public Mica.NetworkSummaryDto asDto(@NotNull Network network, boolean asDraft) {
    Mica.NetworkSummaryDto.Builder builder = Mica.NetworkSummaryDto.newBuilder();
    NetworkState networkState = networkService.getEntityState(network.getId());
    builder.setId(network.getId()).addAllAcronym(localizedStringDtos.asDto(network.getAcronym())).addAllName(localizedStringDtos.asDto(network.getName())).setPublished(networkState.isPublished());
    Mica.PermissionsDto permissionsDto = permissionsDtos.asDto(network);
    if (asDraft) {
        // 
        builder.setTimestamps(TimestampsDtos.asDto(network)).setPublished(// 
        networkState.isPublished()).setExtension(Mica.EntityStateDto.networkSummaryState, entityStateDtos.asDto(networkState).setPermissions(permissionsDto).build());
    }
    builder.setPermissions(permissionsDto);
    network.getStudyIds().stream().filter(sId -> asDraft && subjectAclService.isPermitted("/draft/individual-study", "VIEW", sId) || subjectAclService.isAccessible("/individual-study", sId)).forEach(sId -> {
        try {
            builder.addStudyIds(sId);
        } catch (NoSuchEntityException e) {
            log.warn("Study not found in network {}: {}", network.getId(), sId);
        // ignore
        }
    });
    network.getNetworkIds().stream().filter(nId -> asDraft && subjectAclService.isPermitted("/draft/network", "VIEW", nId) || subjectAclService.isAccessible("/network", nId)).forEach(nId -> {
        try {
            builder.addNetworkIds(nId);
        } catch (NoSuchEntityException e) {
            log.warn("Network not found in network {}: {}", network.getId(), nId);
        // ignore
        }
    });
    return builder.build();
}