Examples with Population org.obiba.mica.study.domain.Population used on opensource projects

Example 1 with Population

use of org.obiba.mica.study.domain.Population in project mica2 by obiba.

the class Mica310Upgrade method setDefaultWeightForStudyPopulations.

private void setDefaultWeightForStudyPopulations(BaseStudy study) {
    int i = 0;
    for (Population population : study.getPopulations()) {
        population.setWeight(i++);
        setDefaultWeightForPopulationDataCollectionEvents(population);
    }
}

Example 2 with Population

use of org.obiba.mica.study.domain.Population in project mica2 by obiba.

the class SpecificStudyReportGenerator method writeEachLine.

@Override
protected void writeEachLine(CSVWriter writer) {
    for (String studyId : studyIds) {
        BaseStudy publishedStudy = publishedStudyService.findById(studyId);
        if (publishedStudy != null) {
            List<String> publishedStudyDetails = generatePublishedStudyDetails(publishedStudy);
            Iterator<Population> populationIterator = publishedStudy.getPopulations().iterator();
            if (!populationIterator.hasNext()) {
                writer.writeNext(publishedStudyDetails.toArray(new String[publishedStudyDetails.size()]));
            }
            while (populationIterator.hasNext()) {
                List<String> buildingCompleteLine = new ArrayList<>(publishedStudyDetails);
                Population next = populationIterator.next();
                buildingCompleteLine.addAll(generatePopulationDetails(next));
                writer.writeNext(buildingCompleteLine.toArray(new String[buildingCompleteLine.size()]));
            }
        } else {
            BaseStudy draftStudy = studyService.findStudy(studyId);
            if (draftStudy != null) {
                List<String> lineOfDratStudy = generateDraftStudyDetails(draftStudy);
                writer.writeNext(lineOfDratStudy.toArray(new String[lineOfDratStudy.size()]));
            }
        }
    }
}

Example 3 with Population

use of org.obiba.mica.study.domain.Population in project mica2 by obiba.

the class TestDataCollectionEventSort method test_partial_date_fields.

@Test
public void test_partial_date_fields() {
    Population population = createPopulation("Test Population", createEvent("A", 2010, null, 2020, null), createEvent("A", 1997, 1, 2000, null));
    DataCollectionEvent event = Iterables.get(population.getDataCollectionEvents(), 0);
    assertThat(event.getStart()).isEqualTo(of(1997, 1));
}

Example 4 with Population

use of org.obiba.mica.study.domain.Population in project mica2 by obiba.

the class TestDataCollectionEventSort method test_study_population_sort_with_duplicate_event_dates.

@Test
public void test_study_population_sort_with_duplicate_event_dates() {
    Study study = new Study();
    study.setId("01234567889");
    study.addPopulation(createPopulation("Population001", createEvent("A", 2010, 1, 2020, 12), createEvent("B", 2014, 1, 2035, 12), createEvent("C", 2010, 1, 2020, 12)));
    Population population = Iterables.get(study.getPopulations(), 0);
    SortedSet<DataCollectionEvent> events = population.getDataCollectionEvents();
    assertThat(events.size()).isEqualTo(3);
    assertThat(Iterables.get(events, 0).getStart()).isEqualTo(of(2010, 1));
    assertThat(Iterables.get(events, 1).getStart()).isEqualTo(of(2010, 1));
}

Example 5 with Population

use of org.obiba.mica.study.domain.Population in project mica2 by obiba.

the class TestDataCollectionEventSort method test_study_population_sort.

@Test
public void test_study_population_sort() {
    Study study = new Study();
    study.setId("01234567889");
    study.addPopulation(createPopulation("Population001", createEvent("A", 2010, 1, 2020, 12), createEvent("A", 2014, 1, 2035, 12)));
    study.addPopulation(createPopulation("Population001", createEvent("A", 1997, 8, 1998, 12), createEvent("A", 1996, 1, 2000, 12)));
    Population population = Iterables.get(study.getPopulations(), 0);
    DataCollectionEvent event = Iterables.get(population.getDataCollectionEvents(), 0);
    assertThat(event.getStart()).isEqualTo(of(1996, 1));
}