Examples with Population org.obiba.mica.study.domain.Population used on opensource projects

Example 11 with Population

use of org.obiba.mica.study.domain.Population in project mica2 by obiba.

the class TestDataCollectionEventSort method test_all_date_fields.

@Test
public void test_all_date_fields() {
    Population population = createPopulation("Test Population", createEvent("A", 2010, 1, 2020, 12), createEvent("A", 1997, 1, 2000, 12), createEvent("A", 1997, 8, 2000, 12));
    population.setName(en("Test Population"));
    DataCollectionEvent event = Iterables.get(population.getDataCollectionEvents(), 0);
    assertThat(event.getStart()).isEqualTo(of(1997, 1));
}

Example 12 with Population

use of org.obiba.mica.study.domain.Population in project mica2 by obiba.

the class StudySummaryDtosTest method populations.

private List<Population> populations(List<String> countriesIsos) {
    HashMap<String, Object> selectionCriteria = new HashMap<>();
    selectionCriteria.put("countriesIso", countriesIsos);
    HashMap<String, Object> model = new HashMap<>();
    model.put("selectionCriteria", selectionCriteria);
    List<Population> populations = new ArrayList<>();
    Population population = new Population();
    population.setModel(model);
    populations.add(population);
    return populations;
}

Example 13 with Population

use of org.obiba.mica.study.domain.Population in project mica2 by obiba.

the class Mica310Upgrade method transformExistingStudies.

private void transformExistingStudies(Study study) {
    try {
        for (Population population : study.getPopulations()) {
            List<String> dataSources = (List<String>) ((Map<String, Object>) population.getModel().get("recruitment")).get("dataSources");
            dataSources.remove("existing_studies");
            dataSources.add("exist_studies");
        }
    } catch (RuntimeException ignore) {
    }
}

Example 14 with Population

use of org.obiba.mica.study.domain.Population in project mica2 by obiba.

the class CollectedDatasetService method processVariablesForStudyDataset.

public List<DatasetVariable> processVariablesForStudyDataset(StudyDataset dataset, Iterable<DatasetVariable> variables) {
    if (!dataset.hasStudyTable()) {
        return Lists.newArrayList(variables);
    }
    StudyTable studyTable = dataset.getStudyTable();
    BaseStudy study = studyService.findStudy(dataset.getStudyTable().getStudyId());
    Population population = study.findPopulation(studyTable.getPopulationId());
    if (population == null) {
        return Lists.newArrayList(variables);
    }
    int populationWeight = population.getWeight();
    DataCollectionEvent dataCollectionEvent = population.findDataCollectionEvent(studyTable.getDataCollectionEventId());
    if (dataCollectionEvent == null) {
        return Lists.newArrayList(variables);
    }
    int dataCollectionEventWeight = dataCollectionEvent.getWeight();
    return StreamSupport.stream(variables.spliterator(), false).map(datasetVariable -> {
        datasetVariable.setPopulationWeight(populationWeight);
        datasetVariable.setDataCollectionEventWeight(dataCollectionEventWeight);
        return datasetVariable;
    }).collect(toList());
}

Example 15 with Population

use of org.obiba.mica.study.domain.Population in project mica2 by obiba.

the class CollectedDatasetService method prepareForIndex.

private void prepareForIndex(StudyDataset dataset) {
    if (dataset.hasStudyTable()) {
        StudyTable studyTable = dataset.getStudyTable();
        BaseStudy study = publishedStudyService.findById(dataset.getStudyTable().getStudyId());
        if (study != null) {
            Population population = study.findPopulation(studyTable.getPopulationId());
            if (population != null) {
                studyTable.setPopulationWeight(population.getWeight());
                DataCollectionEvent dataCollectionEvent = population.findDataCollectionEvent(studyTable.getDataCollectionEventId());
                if (dataCollectionEvent != null) {
                    studyTable.setDataCollectionEventWeight(dataCollectionEvent.getWeight());
                }
            }
        }
    }
}