Examples with Vocabulary org.obiba.opal.core.domain.taxonomy.Vocabulary used on opensource projects

Example 1 with Vocabulary

use of org.obiba.opal.core.domain.taxonomy.Vocabulary in project mica2 by obiba.

the class MicaConfigService method getTaxonomyNode.

private JsonNode getTaxonomyNode(TaxonomyTarget taxonomyTarget, String locale) {
    Taxonomy taxonomy = taxonomyConfigService.findByTarget(taxonomyTarget);
    ObjectNode vocabularies = new ObjectNode(JsonNodeFactory.instance);
    for (Vocabulary vocabulary : taxonomy.getVocabularies()) {
        ObjectNode vocabularyNode = createObjectNode(vocabulary, locale);
        vocabularyNode = addTerms(vocabularyNode, vocabulary.getTerms(), locale);
        vocabularies.set(vocabulary.getName(), vocabularyNode);
    }
    ObjectNode taxonomyNode = createObjectNode(taxonomy, locale);
    taxonomyNode.set("vocabulary", vocabularies);
    return taxonomyNode;
}

Example 2 with Vocabulary

use of org.obiba.opal.core.domain.taxonomy.Vocabulary in project mica2 by obiba.

the class TaxonomyService method copy.

private Taxonomy copy(Taxonomy source) {
    Taxonomy target = new Taxonomy();
    BeanUtils.copyProperties(source, target, "vocabularies");
    if (source.hasVocabularies()) {
        source.getVocabularies().forEach(sourceVoc -> {
            Vocabulary targetVoc = new Vocabulary();
            BeanUtils.copyProperties(sourceVoc, targetVoc, "terms");
            if (sourceVoc.hasTerms()) {
                sourceVoc.getTerms().forEach(sourceTerm -> {
                    Term targetTerm = new Term();
                    BeanUtils.copyProperties(sourceTerm, targetTerm);
                    targetVoc.addTerm(targetTerm);
                });
            }
            target.addVocabulary(targetVoc);
        });
    }
    return target;
}

Example 3 with Vocabulary

use of org.obiba.opal.core.domain.taxonomy.Vocabulary in project mica2 by obiba.

the class VocabularyMissingRangeAttributeExceptionMapper method getErrorDto.

@Override
protected GeneratedMessage.ExtendableMessage<?> getErrorDto(VocabularyMissingRangeAttributeException e) {
    Vocabulary vocabulary = e.getVocabulary();
    ErrorDtos.ClientErrorDto.Builder builder = ErrorDtos.ClientErrorDto.newBuilder().setCode(getStatus().getStatusCode());
    if (vocabulary != null) {
        builder.setMessageTemplate("server.error.taxonomy.range-criterion-missing-range-attribute");
        builder.addArguments(vocabulary.getName());
    }
    return builder.build();
}

Example 4 with Vocabulary

use of org.obiba.opal.core.domain.taxonomy.Vocabulary in project mica2 by obiba.

the class ConfigurationTaxonomyMetaDataProvider method getAllLocalizedMetadata.

private Map<String, LocalizedMetaData> getAllLocalizedMetadata(String aggregation) {
    Taxonomy taxonomy = getTaxonomy();
    Vocabulary v = taxonomyVocabularyWithAlias(taxonomy, aggregation);
    if (v == null && taxonomy.hasVocabulary(aggregation)) {
        log.debug("Found in taxonomy {} a vocabulary with name: {}", taxonomy.getName(), aggregation);
        v = taxonomy.getVocabulary(aggregation);
    }
    return populateMetadataMap(v);
}

Example 5 with Vocabulary

use of org.obiba.opal.core.domain.taxonomy.Vocabulary in project mica2 by obiba.

the class TaxonomyConfigServiceTest method createVocabulary.

private Vocabulary createVocabulary(String name, List<Term> terms, Map<String, String> attributes) {
    Vocabulary vocabulary = new Vocabulary(name);
    vocabulary.setTitle(LocalizedString.en(name + "-title"));
    vocabulary.setDescription(LocalizedString.en(name + "-desc"));
    if (terms != null)
        vocabulary.setTerms(terms);
    if (attributes != null)
        vocabulary.setAttributes(attributes);
    return vocabulary;
}