Examples with Concept org.openmrs.Concept used on opensource projects

Example 26 with Concept

use of org.openmrs.Concept in project openmrs-module-pihcore by PIH.

the class CauseOfDeathListTagHandler method getSubstitution.

@Override
protected String getSubstitution(FormEntrySession session, FormSubmissionController controllerActions, Map<String, String> parameters) throws BadFormDesignException {
    Concept causeGroupConcept = HtmlFormEntryUtil.getConcept(CAUSES_OF_DEATH_CONCEPT);
    List<Obs> existingObs = session.getContext().removeExistingObs(causeGroupConcept);
    CodedOrFreeTextAnswerListWidget widget = new CodedOrFreeTextAnswerListWidget();
    widget.setUiUtils((UiUtils) session.getAttribute("uiUtils"));
    widget.setBetweenElementsCode("mirebalais.deathCertificate.due_to_or_following");
    widget.setTitleCode("mirebalais.deathCertificate.cause_of_death");
    widget.setPlaceholderCode("mirebalais.deathCertificate.cause_of_death_instructions");
    widget.setContainerClasses("required");
    if (parameters.get("locale") != null) {
        widget.setLocale(parameters.get("locale"));
    }
    if (existingObs != null && existingObs.size() > 0) {
        widget.setInitialValue(initialValue(existingObs));
    }
    session.getContext().registerWidget(widget);
    ErrorWidget errorWidget = new ErrorWidget();
    session.getContext().registerErrorWidget(widget, errorWidget);
    session.getSubmissionController().addAction(new Action(widget, errorWidget, existingObs));
    return widget.generateHtml(session.getContext());
}

Example 27 with Concept

use of org.openmrs.Concept in project openmrs-module-pihcore by PIH.

the class CauseOfDeathListTagHandler method initialValue.

private List<CodedOrFreeTextAnswer> initialValue(List<Obs> existingList) {
    Concept codedCauseConcept = HtmlFormEntryUtil.getConcept(CODED_CAUSE_OF_DEATH_CONCEPT);
    Concept nonCodedCauseConcept = HtmlFormEntryUtil.getConcept(NON_CODED_CAUSE_OF_DEATH_CONCEPT);
    final Concept orderConcept = HtmlFormEntryUtil.getConcept(DIAGNOSIS_SEQUENCE_CONCEPT);
    List<CodedOrFreeTextAnswer> list = new ArrayList<CodedOrFreeTextAnswer>();
    Collections.sort(existingList, new Comparator<Obs>() {

        @Override
        public int compare(Obs left, Obs right) {
            return OpenmrsUtil.compareWithNullAsGreatest(getMemberValueNumeric(orderConcept, left), getMemberValueNumeric(orderConcept, right));
        }
    });
    for (Obs existing : existingList) {
        Obs coded = findMember(existing, codedCauseConcept);
        if (coded != null) {
            list.add(new CodedOrFreeTextAnswer(coded));
        } else {
            Obs nonCoded = findMember(existing, nonCodedCauseConcept);
            list.add(new CodedOrFreeTextAnswer(nonCoded));
        }
    }
    return list;
}

Example 28 with Concept

use of org.openmrs.Concept in project openmrs-module-pihcore by PIH.

the class PastMedicalHistoryCheckboxTagHandler method getSubstitution.

@Override
protected String getSubstitution(FormEntrySession session, FormSubmissionController controller, Map<String, String> attributes) throws BadFormDesignException {
    Concept concept = HtmlFormEntryUtil.getConcept(attributes.get("concept"));
    if (concept == null) {
        throw new IllegalArgumentException("Concept not found: " + attributes.get("concept"));
    }
    boolean includeCommentField = parseBooleanAttribute(attributes.get("specify"), false);
    String label = attributes.get("label");
    String translateLabel = null;
    if (label == null) {
        translateLabel = concept.getName().getName();
    } else {
        translateLabel = MessageUtil.translate(label);
    }
    FormEntryContext context = session.getContext();
    Obs existingObs = findExistingObs(context, HtmlFormEntryUtil.getConcept(PihCoreConstants.PAST_MEDICAL_HISTORY_CONSTRUCT), HtmlFormEntryUtil.getConcept(PihCoreConstants.PAST_MEDICAL_HISTORY_FINDING), concept);
    CheckboxWidget checkboxWidget = new CheckboxWidget(translateLabel, PRESENT);
    checkboxWidget.setInitialValue(existingObs);
    context.registerWidget(checkboxWidget);
    TextFieldWidget textFieldWidget = null;
    ErrorWidget errorWidget = new ErrorWidget();
    if (includeCommentField) {
        textFieldWidget = new TextFieldWidget();
        textFieldWidget.setPlaceholder(messageSourceService.getMessage("zl.pastMedicalHistory.specifyLabel"));
        if (existingObs != null) {
            Obs candidate = findMember(existingObs, HtmlFormEntryUtil.getConcept(PihCoreConstants.PAST_MEDICAL_HISTORY_FINDING_TEXT));
            if (candidate != null) {
                String comments = candidate.getValueText();
                if (StringUtils.isNotBlank(comments)) {
                    textFieldWidget.setInitialValue(comments);
                }
            }
        }
        context.registerWidget(textFieldWidget);
        context.registerErrorWidget(textFieldWidget, errorWidget);
    }
    String clazz = attributes.get("class");
    String elementId = attributes.get("id");
    StringBuilder html = new StringBuilder();
    html.append("<div ");
    if (StringUtils.isNotBlank(elementId)) {
        html.append("id=\"").append(elementId).append("\" ");
    }
    html.append("class=\"past-medical-history-item");
    if (StringUtils.isNotBlank(clazz)) {
        html.append(" ").append(clazz);
    }
    html.append("\">");
    html.append(checkboxWidget.generateHtml(context));
    if (includeCommentField) {
        html.append(textFieldWidget.generateHtml(context));
        html.append(errorWidget.generateHtml(context));
    }
    html.append("</div>");
    session.getSubmissionController().addAction(new Action(concept, checkboxWidget, textFieldWidget, existingObs));
    return html.toString();
}

Example 29 with Concept

use of org.openmrs.Concept in project openmrs-module-pihcore by PIH.

the class CleanDiagnosisConstructAction method applyAction.

@Override
public void applyAction(FormEntrySession formEntrySession) {
    Concept diagnosisConstructConcept = Context.getConceptService().getConceptByMapping(EmrApiConstants.CONCEPT_CODE_DIAGNOSIS_CONCEPT_SET, EmrApiConstants.EMR_CONCEPT_SOURCE_NAME);
    Concept codedDiagnosisConcept = Context.getConceptService().getConceptByMapping(EmrApiConstants.CONCEPT_CODE_CODED_DIAGNOSIS, EmrApiConstants.EMR_CONCEPT_SOURCE_NAME);
    Concept nonCodedDiagnosisConcept = Context.getConceptService().getConceptByMapping(EmrApiConstants.CONCEPT_CODE_NON_CODED_DIAGNOSIS, EmrApiConstants.EMR_CONCEPT_SOURCE_NAME);
    Concept orderDiagnosisConcept = Context.getConceptService().getConceptByMapping(EmrApiConstants.CONCEPT_CODE_DIAGNOSIS_ORDER, EmrApiConstants.EMR_CONCEPT_SOURCE_NAME);
    Encounter encounter = formEntrySession.getEncounter();
    boolean updateEncounter = false;
    for (Obs obsGroup : encounter.getObsAtTopLevel(false)) {
        if (obsGroup.getConcept().equals(diagnosisConstructConcept)) {
            // we found a diagnosis construct
            Set<Obs> groupMembers = obsGroup.getGroupMembers();
            if (groupMembers != null && groupMembers.size() > 0) {
                boolean hasDiagnosis = false;
                boolean hasOrder = false;
                for (Obs member : groupMembers) {
                    if (member.getConcept().equals(codedDiagnosisConcept) || member.getConcept().equals(nonCodedDiagnosisConcept)) {
                        hasDiagnosis = true;
                    } else if (member.getConcept().equals(orderDiagnosisConcept)) {
                        hasOrder = true;
                    }
                }
                if (!hasDiagnosis) {
                    // we do not have a diagnosis but have other dangling construct obs
                    removeGivenObsAndTheirGroupMembersFromEncounter(Arrays.asList(obsGroup), encounter);
                    updateEncounter = true;
                } else if (!hasOrder) {
                    // add by default SECONDARY order
                    Obs order = new Obs();
                    order.setConcept(Context.getConceptService().getConceptByMapping(EmrApiConstants.CONCEPT_CODE_DIAGNOSIS_ORDER, EmrApiConstants.EMR_CONCEPT_SOURCE_NAME));
                    order.setValueCoded(Context.getConceptService().getConceptByMapping(EmrApiConstants.CONCEPT_CODE_DIAGNOSIS_ORDER_SECONDARY, EmrApiConstants.EMR_CONCEPT_SOURCE_NAME));
                    order.setObsDatetime(encounter.getEncounterDatetime());
                    order.setLocation(encounter.getLocation());
                    order.setEncounter(encounter);
                    order.setPerson(encounter.getPatient());
                    obsGroup.addGroupMember(order);
                    Context.getObsService().saveObs(obsGroup, "add diagnosis order");
                }
            }
        }
    }
    if (updateEncounter) {
        Context.getEncounterService().saveEncounter(encounter);
    }
}

Example 30 with Concept

use of org.openmrs.Concept in project openmrs-module-pihcore by PIH.

the class SetObsDatesToSpecimenCollectionDateAction method applyAction.

@Override
public void applyAction(FormEntrySession formEntrySession) {
    Concept specimenCollectionDateConcept = Context.getConceptService().getConceptByMapping(SPECIMEN_DATE_COLLECTED_CONCEPT_CODE_PIH, "PIH");
    Date specimenCollectionDate = null;
    Encounter encounter = formEntrySession.getEncounter();
    if (specimenCollectionDateConcept != null) {
        for (Obs candidate : encounter.getAllObs(false)) {
            if (candidate.getConcept().equals(specimenCollectionDateConcept)) {
                specimenCollectionDate = candidate.getValueDate();
                candidate.setObsDatetime(specimenCollectionDate);
                break;
            }
        }
        if (specimenCollectionDate != null) {
            for (Obs candidate : encounter.getAllObs(false)) {
                if (!candidate.getConcept().getDatatype().containsDate()) {
                    // the logic here is that we don't want to change the obs date of other dates like "Test Result Date"
                    candidate.setObsDatetime(specimenCollectionDate);
                }
            }
            Context.getEncounterService().saveEncounter(encounter);
        }
    } else {
        log.error("Unable to final specimen collection date cnept when applying setObsDatesToSpecimenCollectionDateAction");
    }
}