Examples with Concept org.openmrs.Concept used on opensource projects

Example 31 with Concept

use of org.openmrs.Concept in project openmrs-module-pihcore by PIH.

the class CleanPrescriptionConstructAction method applyAction.

@Override
public void applyAction(FormEntrySession formEntrySession) {
    Concept prescriptionConstructConcept = Context.getConceptService().getConceptByMapping(CleanPrescriptionConstructAction.PRESCRIPTION_CONSTRUCT_CONCEPT, "PIH");
    Concept medicationOrdersConcept = Context.getConceptService().getConceptByMapping(CleanPrescriptionConstructAction.MEDICATION_ORDERS_CONCEPT, "PIH");
    Encounter encounter = formEntrySession.getEncounter();
    boolean updateEncounter = false;
    for (Obs obsGroup : encounter.getObsAtTopLevel(false)) {
        if (obsGroup.getConcept().equals(prescriptionConstructConcept)) {
            // we found a prescription medication construct
            Set<Obs> groupMembers = obsGroup.getGroupMembers();
            if (groupMembers != null && groupMembers.size() > 0) {
                boolean hasMedicationOrders = false;
                for (Obs member : groupMembers) {
                    if (member.getConcept().equals(medicationOrdersConcept)) {
                        hasMedicationOrders = true;
                    }
                }
                if (!hasMedicationOrders) {
                    // we do not have a medication order but have other dangling construct obs
                    removeGivenObsAndTheirGroupMembersFromEncounter(Arrays.asList(obsGroup), encounter);
                    updateEncounter = true;
                }
            }
        }
    }
    if (updateEncounter) {
        Context.getEncounterService().saveEncounter(encounter);
    }
}

Example 32 with Concept

use of org.openmrs.Concept in project openmrs-module-pihcore by PIH.

the class ConditionListVelocityContextContentProvider method getActiveConditionsConcepts.

protected List<Concept> getActiveConditionsConcepts(Patient patient) {
    List<Condition> conditionList = getActiveConditions(patient);
    List<Concept> conditionListConcepts = new ArrayList<Concept>();
    for (Condition condition : conditionList) {
        if (condition.getCondition().getCoded() != null) {
            conditionListConcepts.add(condition.getCondition().getCoded());
        }
    }
    return conditionListConcepts;
}

Example 33 with Concept

use of org.openmrs.Concept in project openmrs-module-pihcore by PIH.

the class ConditionListVelocityContextContentProvider method populateContext.

@Override
public void populateContext(FormEntrySession formEntrySession, VelocityContext velocityContext) {
    Patient patient = formEntrySession.getPatient();
    List<Condition> conditionList = getActiveConditions(patient);
    List<Concept> conditionListConcepts = getActiveConditionsConcepts(patient);
    velocityContext.put("conditionList", conditionList);
    velocityContext.put("conditionListConcepts", conditionListConcepts);
}

Example 34 with Concept

use of org.openmrs.Concept in project openmrs-core by openmrs.

the class ProgramEditor method setAsText.

/**
 * @should set using concept id
 * @should set using concept uuid
 * @should set using program id
 * @should set using program uuid
 */
@Override
public void setAsText(String text) throws IllegalArgumentException {
    if (StringUtils.hasText(text)) {
        try {
            if (text.startsWith("concept.")) {
                Integer conceptId = Integer.valueOf(text.substring(text.indexOf('.') + 1));
                Concept c = Context.getConceptService().getConcept(conceptId);
                setValue(Context.getProgramWorkflowService().getProgramByName(c.getName().getName()));
            } else {
                Integer programId = Integer.valueOf(text);
                setValue(Context.getProgramWorkflowService().getProgram(programId));
            }
        } catch (Exception ex) {
            Program p;
            if (text.startsWith("concept.")) {
                Concept c = Context.getConceptService().getConceptByUuid(text.substring(text.indexOf('.') + 1));
                p = Context.getProgramWorkflowService().getProgramByName(c.getName().getName());
            } else {
                p = Context.getProgramWorkflowService().getProgramByUuid(text);
            }
            setValue(p);
            if (p == null) {
                log.error("Error setting text: " + text, ex);
                throw new IllegalArgumentException("Program not found: " + text, ex);
            }
        }
    } else {
        setValue(null);
    }
}

Example 35 with Concept

use of org.openmrs.Concept in project openmrs-core by openmrs.

the class ConceptAnswersEditor method setAsText.

/**
 * loops over the textbox assigned to this property. The textbox is assumed to be a string of
 * conceptIds^drugIds separated by spaces.
 *
 * @param text list of conceptIds (not conceptAnswerIds)
 * @should set the sort weights with the least possible changes
 */
@Override
public void setAsText(String text) throws IllegalArgumentException {
    if (StringUtils.hasText(text)) {
        ConceptService cs = Context.getConceptService();
        String[] conceptIds = text.split(" ");
        List<String> requestConceptIds = new ArrayList<>();
        // set up parameter answer Set for easier add/delete functions and removal of duplicates
        for (String id : conceptIds) {
            id = id.trim();
            if (!("".equals(id)) && !requestConceptIds.contains(id)) {
                // remove whitespace, blank lines, and duplicates
                requestConceptIds.add(id);
            }
        }
        Collection<ConceptAnswer> deletedConceptAnswers = new HashSet<>();
        // loop over original concept answers to find any deleted answers
        for (ConceptAnswer origConceptAnswer : originalConceptAnswers) {
            boolean answerDeleted = true;
            for (String conceptId : requestConceptIds) {
                Integer id = getConceptId(conceptId);
                Integer drugId = getDrugId(conceptId);
                Drug answerDrug = origConceptAnswer.getAnswerDrug();
                if (id.equals(origConceptAnswer.getAnswerConcept().getConceptId())) {
                    if (drugId == null && answerDrug == null) {
                        answerDeleted = false;
                    } else if ((drugId != null && answerDrug != null) && drugId.equals(origConceptAnswer.getAnswerDrug().getDrugId())) {
                        answerDeleted = false;
                    }
                }
            }
            if (answerDeleted) {
                deletedConceptAnswers.add(origConceptAnswer);
            }
        }
        // loop over those deleted answers to delete them
        for (ConceptAnswer conceptAnswer : deletedConceptAnswers) {
            originalConceptAnswers.remove(conceptAnswer);
        }
        // loop over concept ids in the request to add any that are new
        for (String conceptId : requestConceptIds) {
            Integer id = getConceptId(conceptId);
            Integer drugId = getDrugId(conceptId);
            boolean newAnswerConcept = true;
            for (ConceptAnswer origConceptAnswer : originalConceptAnswers) {
                Drug answerDrug = origConceptAnswer.getAnswerDrug();
                if (id.equals(origConceptAnswer.getAnswerConcept().getConceptId())) {
                    if (drugId == null && answerDrug == null) {
                        newAnswerConcept = false;
                    } else if ((drugId != null && answerDrug != null) && drugId.equals(answerDrug.getDrugId())) {
                        newAnswerConcept = false;
                    }
                }
            }
            // if the current request answer is new, add it to the originals
            if (newAnswerConcept) {
                Concept answer = cs.getConcept(id);
                Drug drug = null;
                if (drugId != null) {
                    drug = cs.getDrug(drugId);
                }
                ConceptAnswer ac = new ConceptAnswer(answer, drug);
                originalConceptAnswers.add(ac);
            }
        }
        // loop over to set the order
        // as the list comes into 'requestConceptIds' in the order the user wants
        // there are 2 conditions that will require the sort_weights to be reassigned
        // 1) any ConceptAnswer.sortWeight == NULL (meaning it is just added)
        // 2) the list is not in ASCENDING order (example sort order of the list is 1, 2, 10, 9)
        // -startIdx (start index) is where in this list we will start to reassign the sort_weights
        Double lastWeightSeen = null;
        // the idx to start at, if we have a NULL sort weight (new concept answer) or sort weights are not ascending
        int startIdx = -1;
        for (int i = 0; i < requestConceptIds.size() - 1; i++) {
            Integer id1 = getConceptId(requestConceptIds.get(i));
            ConceptAnswer ca1 = getConceptAnswerFromOriginal(id1);
            if (ca1.getSortWeight() == null) {
                if (lastWeightSeen == null) {
                    // start at 1, we're at the beginning
                    lastWeightSeen = 1d;
                } else {
                    // we start at +1
                    lastWeightSeen += 1;
                }
                startIdx = i;
                break;
            }
            Integer id2 = getConceptId(requestConceptIds.get(i + 1));
            ConceptAnswer ca2 = getConceptAnswerFromOriginal(id2);
            int c = ca1.compareTo(ca2);
            if (c > 0) {
                startIdx = i;
                lastWeightSeen = ca1.getSortWeight();
                break;
            }
            lastWeightSeen = ca1.getSortWeight();
        }
        if (startIdx != -1) {
            // then we need to re-weight
            for (int i = startIdx; i < requestConceptIds.size(); i++) {
                Integer id = getConceptId(requestConceptIds.get(i));
                ConceptAnswer ca = getConceptAnswerFromOriginal(id);
                ca.setSortWeight(lastWeightSeen++);
            }
        }
        log.debug("originalConceptAnswers.getConceptId(): ");
        for (ConceptAnswer a : originalConceptAnswers) {
            log.debug("id: " + a.getAnswerConcept().getConceptId());
        }
        log.debug("requestConceptIds: ");
        for (String i : requestConceptIds) {
            log.debug("id: " + i);
        }
    } else {
        originalConceptAnswers.clear();
    }
    setValue(originalConceptAnswers);
}