Examples with Patient org.openmrs.Patient used on opensource projects

Example 91 with Patient

use of org.openmrs.Patient in project openmrs-core by openmrs.

the class HL7ServiceImpl method createPersonFromNK1.

/**
 * @see org.openmrs.hl7.HL7Service#createPersonFromNK1(ca.uhn.hl7v2.model.v25.segment.NK1)
 */
@Override
public Person createPersonFromNK1(NK1 nk1) throws HL7Exception {
    // NOTE: following block (with minor modifications) stolen from
    // ADTA28Handler
    // TODO: generalize this for use with both PID and NK1 segments
    Person person = new Person();
    // UUID
    CX[] identifiers = nk1.getNextOfKinAssociatedPartySIdentifiers();
    String uuid = getUuidFromIdentifiers(identifiers);
    if (Context.getPersonService().getPersonByUuid(uuid) != null) {
        throw new HL7Exception("Non-unique UUID '" + uuid + "' for new person");
    }
    person.setUuid(uuid);
    // Patient Identifiers
    List<PatientIdentifier> goodIdentifiers = new ArrayList<>();
    for (CX id : identifiers) {
        String assigningAuthority = id.getAssigningAuthority().getNamespaceID().getValue();
        String hl7PatientId = id.getIDNumber().getValue();
        log.debug("identifier has id=" + hl7PatientId + " assigningAuthority=" + assigningAuthority);
        if (assigningAuthority != null && assigningAuthority.length() > 0) {
            try {
                PatientIdentifierType pit = Context.getPatientService().getPatientIdentifierTypeByName(assigningAuthority);
                if (pit == null) {
                    if (!"UUID".equals(assigningAuthority)) {
                        log.warn("Can't find PatientIdentifierType named '" + assigningAuthority + "'");
                    }
                    // skip identifiers with unknown type
                    continue;
                }
                PatientIdentifier pi = new PatientIdentifier();
                pi.setIdentifierType(pit);
                pi.setIdentifier(hl7PatientId);
                // Get default location
                Location location = Context.getLocationService().getDefaultLocation();
                if (location == null) {
                    throw new HL7Exception("Cannot find default location");
                }
                pi.setLocation(location);
                try {
                    PatientIdentifierValidator.validateIdentifier(pi);
                    goodIdentifiers.add(pi);
                } catch (PatientIdentifierException ex) {
                    log.warn("Patient identifier in NK1 is invalid: " + pi, ex);
                }
            } catch (Exception e) {
                log.error("Uncaught error parsing/creating patient identifier '" + hl7PatientId + "' for assigning authority '" + assigningAuthority + "'", e);
            }
        } else {
            log.debug("NK1 contains identifier with no assigning authority");
            continue;
        }
    }
    if (!goodIdentifiers.isEmpty()) {
        // If we have one identifier, set it as the preferred to make the validator happy.
        if (goodIdentifiers.size() == 1) {
            goodIdentifiers.get(0).setPreferred(true);
        }
        // cast the person as a Patient and add identifiers
        person = new Patient(person);
        ((Patient) person).addIdentifiers(goodIdentifiers);
    }
    // Person names
    for (XPN patientNameX : nk1.getNKName()) {
        PersonName name = new PersonName();
        name.setFamilyName(patientNameX.getFamilyName().getSurname().getValue());
        name.setGivenName(patientNameX.getGivenName().getValue());
        name.setMiddleName(patientNameX.getSecondAndFurtherGivenNamesOrInitialsThereof().getValue());
        person.addName(name);
    }
    // Gender (checks for null, but not for 'M' or 'F')
    String gender = nk1.getAdministrativeSex().getValue();
    if (gender == null) {
        throw new HL7Exception("Missing gender in an NK1 segment");
    }
    gender = gender.toUpperCase();
    if (!OpenmrsConstants.GENDER().containsKey(gender)) {
        throw new HL7Exception("Unrecognized gender: " + gender);
    }
    person.setGender(gender);
    // Date of Birth
    TS dateOfBirth = nk1.getDateTimeOfBirth();
    if (dateOfBirth == null || dateOfBirth.getTime() == null || dateOfBirth.getTime().getValue() == null) {
        throw new HL7Exception("Missing birth date in an NK1 segment");
    }
    person.setBirthdate(HL7Util.parseHL7Timestamp(dateOfBirth.getTime().getValue()));
    // Estimated birthdate?
    ID precisionTemp = dateOfBirth.getDegreeOfPrecision();
    if (precisionTemp != null && precisionTemp.getValue() != null) {
        String precision = precisionTemp.getValue().toUpperCase();
        log.debug("The birthdate is estimated: " + precision);
        if ("Y".equals(precision) || "L".equals(precision)) {
            person.setBirthdateEstimated(true);
        }
    }
    // save the new person or patient
    if (person instanceof Patient) {
        Context.getPatientService().savePatient((Patient) person);
    } else {
        Context.getPersonService().savePerson(person);
    }
    return person;
}

Example 92 with Patient

use of org.openmrs.Patient in project openmrs-core by openmrs.

the class ADTA28Handler method processADT_A28.

private Message processADT_A28(ADT_A05 adt) throws HL7Exception {
    // validate HL7 version
    validate(adt);
    // extract segments for convenient use below
    MSH msh = getMSH(adt);
    PID pid = getPID(adt);
    // Obtain message control id (unique ID for message from sending
    // application). Eventually avoid replaying the same message.
    String messageControlId = msh.getMessageControlID().getValue();
    log.debug("Found HL7 message in inbound queue with control id = " + messageControlId);
    // Add creator of the patient to application
    String sendingApp = msh.getSendingApplication().getComponent(0).toString();
    log.debug("SendingApplication = " + sendingApp);
    // Search for the patient
    Integer patientId = findPatientId(pid);
    // Create new patient if the patient id doesn't exist yet
    if (patientId == null) {
        log.info("Creating new patient in response to ADT_A28 " + messageControlId);
        Patient patient = createPatient(pid, sendingApp);
        if (patient == null) {
            throw new HL7Exception("Couldn't create Patient object from PID");
        }
        Context.getPatientService().savePatient(patient);
    } else {
        log.info("Ignoring ADT_A28 message because patient (" + patientId + ") already exists.");
    }
    return adt;
}

Example 93 with Patient

use of org.openmrs.Patient in project openmrs-core by openmrs.

the class HL7ServiceTest method processHL7Message_shouldSaveHl7MessageToTheDatabase.

/**
 * @throws HL7Exception
 * @see HL7Service#processHL7Message(Message)
 */
@Test
public void processHL7Message_shouldSaveHl7MessageToTheDatabase() throws HL7Exception {
    executeDataSet("org/openmrs/hl7/include/ORUTest-initialData.xml");
    HL7Service hl7service = Context.getHL7Service();
    Message message = hl7service.parseHL7String("MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20080226102656||ORU^R01|JqnfhKKtouEz8kzTk6Zo|P|2.5|1||||||||16^AMRS.ELD.FORMID\r" + "PID|||3^^^^||John3^Doe^||\r" + "PV1||O|1^Unknown Location||||1^Super User (1-8)|||||||||||||||||||||||||||||||||||||20080212|||||||V\r" + "ORC|RE||||||||20080226102537|1^Super User\r" + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT\r" + "OBX|1|NM|5497^CD4, BY FACS^99DCT||450|||||||||20080206\r" + "OBX|2|DT|5096^RETURN VISIT DATE^99DCT||20080229|||||||||20080212");
    Message result = hl7service.processHL7Message(message);
    Assert.assertNotNull(result);
    Concept returnVisitDateConcept = new Concept(5096);
    Calendar cal = Calendar.getInstance();
    cal.set(2008, Calendar.FEBRUARY, 29, 0, 0, 0);
    List<Obs> returnVisitDateObsForPatient3 = Context.getObsService().getObservationsByPersonAndConcept(new Patient(3), returnVisitDateConcept);
    assertEquals("There should be a return visit date", 1, returnVisitDateObsForPatient3.size());
}

Example 94 with Patient

use of org.openmrs.Patient in project openmrs-core by openmrs.

the class ORUR01HandlerTest method processMessage_shouldCreateAnEncounterAndFindTheProviderByPersonId.

/**
 * @see ORUR01Handler#processMessage(Message)
 */
@Test
public void processMessage_shouldCreateAnEncounterAndFindTheProviderByPersonId() throws Exception {
    int patientId = 2;
    Patient patient = new Patient(patientId);
    List<Encounter> encForPatient1 = Context.getEncounterService().getEncountersByPatient(patient);
    String hl7string = "MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20080226102656||ORU^R01|JqnfhKKtouEz8kzTk6Zo|P|2.5|1||||||||16^AMRS.ELD.FORMID\r" + "PID|||" + patientId + "^^^^||Hornblower^Horatio^Test||\r" + "PV1||O|1^Unknown Location||||1^name|||||||||||||||||||||||||||||||||||||20080212|||||||V\r" + "ORC|RE||||||||20080226102537|1^Super User\r" + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT";
    Message hl7message = parser.parse(hl7string);
    router.processMessage(hl7message);
    List<Encounter> encForPatient2 = Context.getEncounterService().getEncountersByPatient(patient);
    assertTrue("An encounter should have been created", (encForPatient1.size() + 1) == encForPatient2.size());
    encForPatient2.removeAll(encForPatient1);
    Assert.assertTrue(encForPatient2.size() == 1);
    Provider newProvider = encForPatient2.get(0).getProvidersByRole(Context.getEncounterService().getEncounterRoleByUuid(EncounterRole.UNKNOWN_ENCOUNTER_ROLE_UUID)).iterator().next();
    Assert.assertEquals("c2299800-cca9-11e0-9572-0800200c9a66", newProvider.getUuid());
}

Example 95 with Patient

use of org.openmrs.Patient in project openmrs-core by openmrs.

the class ORUR01HandlerTest method processMessage_shouldCreateAnEncounterAndFindTheProviderByProviderId.

/**
 * @see ORUR01Handler#processMessage(Message)
 */
@Test
public void processMessage_shouldCreateAnEncounterAndFindTheProviderByProviderId() throws Exception {
    executeDataSet("org/openmrs/api/include/ProviderServiceTest-initial.xml");
    int patientId = 2;
    Patient patient = new Patient(patientId);
    List<Encounter> encForPatient1 = Context.getEncounterService().getEncountersByPatient(patient);
    String hl7string = "MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20080226102656||ORU^R01|JqnfhKKtouEz8kzTk6Zo|P|2.5|1||||||||16^AMRS.ELD.FORMID\r" + "PID|||" + patientId + "^^^^||Hornblower^Horatio^Test||\r" + "PV1||O|1^Unknown Location||||8^name^^^^^^^&" + HL7Constants.PROVIDER_ASSIGNING_AUTH_PROV_ID + "&L|||||||||||||||||||||||||||||||||||||20080212|||||||V\r" + "ORC|RE||||||||20080226102537|1^Super User\r" + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT";
    Message hl7message = parser.parse(hl7string);
    router.processMessage(hl7message);
    // check for the new encounter
    List<Encounter> encForPatient2 = Context.getEncounterService().getEncountersByPatient(patient);
    encForPatient2.removeAll(encForPatient1);
    Assert.assertTrue(encForPatient2.size() == 1);
    Provider newProvider = encForPatient2.get(0).getProvidersByRole(Context.getEncounterService().getEncounterRoleByUuid(EncounterRole.UNKNOWN_ENCOUNTER_ROLE_UUID)).iterator().next();
    Assert.assertEquals("1f9e8336-6b95-11e0-93c3-18a905e044dc", newProvider.getUuid());
}