Examples with Project org.openstack4j.model.identity.v3.Project used on opensource projects

Example 11 with Project

use of org.openstack4j.model.identity.v3.Project in project TrakEM2 by trakem2.

the class Display method openLater.

/**
 * After reloading a project from the database, open the Displays that the project had.
 */
public static Bureaucrat openLater() {
    final HashMap<Display, Object[]> ht_later_local;
    final Project[] ps;
    synchronized (ht_later) {
        if (0 == ht_later.size())
            return null;
        ht_later_local = new HashMap<Display, Object[]>(ht_later);
        ht_later.keySet().removeAll(ht_later_local.keySet());
        final HashSet<Project> unique = new HashSet<Project>();
        for (final Display d : ht_later_local.keySet()) {
            unique.add(d.project);
        }
        ps = unique.toArray(new Project[unique.size()]);
    }
    final Worker worker = new Worker.Task("Opening displays") {

        @Override
        public void exec() {
            try {
                // waiting for Swing
                Thread.sleep(300);
                for (final Display d : ht_later_local.keySet()) {
                    // must be set as front before repainting any ZDisplayable!
                    addDisplay(d);
                    final Object[] props = ht_later_local.get(d);
                    if (ControlWindow.isGUIEnabled())
                        d.makeGUI(d.layer, props);
                    // important to do it after makeGUI
                    d.setLayerLater(d.layer, d.layer.get(((Long) props[3]).longValue()));
                    if (!ControlWindow.isGUIEnabled())
                        continue;
                    d.updateFrameTitle(d.layer);
                    // force a repaint if a prePaint was done TODO this should be properly managed with repaints using always the invokeLater, but then it's DOG SLOW
                    if (d.canvas.getMagnification() > 0.499) {
                        Utils.invokeLater(new Runnable() {

                            @Override
                            public void run() {
                                Display.repaint(d.layer);
                                d.project.getLoader().setChanged(false);
                                Utils.log2("A set to false");
                            }
                        });
                    }
                    d.project.getLoader().setChanged(false);
                    Utils.log2("B set to false");
                }
                if (null != front)
                    front.getProject().select(front.layer);
            } catch (final Throwable t) {
                IJError.print(t);
            }
        }
    };
    return Bureaucrat.createAndStart(worker, ps);
}

Example 12 with Project

use of org.openstack4j.model.identity.v3.Project in project TrakEM2 by trakem2.

the class ImageJCommandListener method commandExecuting.

// I know, I could create a hashtable and then map methods of this class to each command key ... this is just easier, and performance-wise nobody cares
// Or even a hastable with String command keys and then a number as value, and use a gigantic switch block. So much pain to write. WHAT I REALLY WANT is a switch that takes a String and is fast because it has its own hash setup.
public String commandExecuting(final String command) {
    // Utils.log2("Command: " + command);
    // 1 - check source
    ImagePlus current = WindowManager.getCurrentImage();
    // not a trakem2 display: continue happily
    if (!(current instanceof FakeImagePlus))
        return command;
    // 2 - identify project
    final FakeImagePlus fimp = (FakeImagePlus) current;
    final Display display = fimp.getDisplay();
    final LayerSet layer_set = display.getLayer().getParent();
    final Project project = display.getProject();
    final ProjectTree ptree = project.getProjectTree();
    final Displayable active = display.getActive();
    final Selection selection = display.getSelection();
    // FILE menu
    if (command.equals("Save")) {
        project.save();
        return null;
    } else // EDIT menu
    if (command.equals("Undo")) {
        // TODO forward to the active image, if any
        niy(command);
        return null;
    } else if (command.equals("Cut")) {
        // TODO forward to the active image, if any
        niy(command);
        return null;
    } else if (command.equals("Copy")) {
        // TODO forward to the active image, if any
        niy(command);
        return null;
    } else if (command.equals("Copy to System")) {
        // TODO forward to the active image, if any
        niy(command);
        return null;
    } else if (command.equals("Paste")) {
        // TODO forward to the active image, if any
        niy(command);
        return null;
    } else if (command.equals("Clear")) {
        // TODO forward to the active image, if any
        niy(command);
        return null;
    } else if (command.equals("Clear Outside")) {
        // TODO forward to the active image, if any
        niy(command);
        return null;
    } else if (command.equals("Fill")) {
        // TODO forward to the active image, if any
        niy(command);
        return null;
    } else if (command.equals("Draw")) {
        // TODO forward to the active image, if any
        niy(command);
        return null;
    } else if (command.equals("Invert")) {
        // TODO forward to the active image, if any
        niy(command);
        return null;
    } else // EDIT - SELECTION menu
    if (command.equals("Select All")) {
        if (ProjectToolbar.SELECT == Toolbar.getToolId()) {
            selection.selectAll();
            return null;
        }
        return command;
    } else if (command.equals("Select None")) {
        if (ProjectToolbar.SELECT == Toolbar.getToolId()) {
            display.select(null);
            return null;
        }
        return command;
    } else if (command.equals("Restore Selection")) {
        if (ProjectToolbar.SELECT == Toolbar.getToolId()) {
            selection.restore();
            return null;
        }
        return command;
    } else // IMAGE - TYPE menu
    if (command.equals("8-bit")) {
        // TODO forward to the active image, if any
        niy(command);
        return null;
    } else if (command.equals("16-bit")) {
        // TODO forward to the active image, if any
        niy(command);
        return null;
    } else if (command.equals("32-bit")) {
        // TODO forward to the active image, if any
        niy(command);
        return null;
    } else if (command.equals("8-bit Color")) {
        // TODO forward to the active image, if any
        niy(command);
        return null;
    } else if (command.equals("RGB Color")) {
        // TODO forward to the active image, if any
        niy(command);
        return null;
    } else if (command.equals("RGB Stack") || command.equals("HSB Stack")) {
        Utils.showMessage("Can't convert to " + command);
        return null;
    } else // IMAGE - ADJUST menu
    if (command.equals("Brightness/Contrast...")) {
        // TODO forward to the active image, if any
        niy(command);
        return null;
    } else if (command.equals("Window/Level...")) {
        // TODO forward to the active image, if any
        niy(command);
        return null;
    } else if (command.equals("Color Balance...")) {
        // TODO forward to the active image, if any
        niy(command);
        return null;
    } else if (command.equals("Threshold...")) {
        // TODO forward to the active image, if any
        niy(command);
        return null;
    } else if (command.equals("Size...")) {
        if (null != active)
            selection.specify();
        return null;
    } else if (command.equals("Canvas Size...")) {
        display.resizeCanvas();
        return null;
    } else // IMAGE menu
    if (command.equals("Show Info...")) {
        // TODO perhaps it should show only for images ...
        if (null == active) {
            ptree.showInfo(project.getRootProjectThing());
        } else {
            ProjectThing pt = project.findProjectThing(active);
            if (null != pt)
                ptree.showInfo(pt);
        }
        return null;
    } else // IMAGE - COLOR menu
    if (in(command, new String[] { "RGB Split", "RGB Merge...", "Stack to RGB", "Make Composite" })) {
        notAvailable(command);
        return null;
    } else if (command.equals("Show LUT")) {
        return setTempCurrentImage(command, active);
    } else if (command.equals("Edit LUT...")) {
        // TODO forward to the active image, if any
        niy(command);
        return null;
    } else if (command.equals("Average Color")) {
        // TODO forward to the active image, if any
        niy(command);
        return null;
    } else if (command.equals("RGB to CIELAB")) {
        // TODO forward to the active image, if any
        niy(command);
        return null;
    } else if (command.equals("RGB to Luminance")) {
        // TODO forward to the active image, if any
        niy(command);
        return null;
    } else // IMAGE STACK menu
    if (in(command, new String[] { "Add Slice", "Delete Slice" })) {
        Utils.showMessage("Go to the Layer Tree and right-click to add/delete a layer.");
        return null;
    } else if (command.equals("Next Slice [>]")) {
        display.nextLayer(IJ.shiftKeyDown() ? Event.SHIFT_MASK : 0);
        return null;
    } else if (command.equals("Previous Slice [<]")) {
        display.previousLayer(IJ.shiftKeyDown() ? Event.SHIFT_MASK : 0);
        return null;
    } else if (in(command, new String[] { "Set Slice", "Images to Stack", "Stack to Images", "Make Montage..." })) {
        notAvailable(command);
        return null;
    } else if (command.equals("Reslice [/]...")) {
        // TODO
        niy(command);
        return null;
    } else if (command.equals("Z Project...")) {
        // TODO
        niy(command);
        return null;
    } else if (command.equals("3D Project...")) {
        // TODO
        niy(command);
        return null;
    } else if (command.equals("Plot Z-axis Profile")) {
        // TODO
        niy(command);
        return null;
    } else if (command.equals("Start Animation [\\]")) {
        // TODO
        niy(command);
        return null;
    } else if (command.equals("Stop Animation")) {
        // TODO
        niy(command);
        return null;
    } else // IMAGE menu again
    if (command.equals("Crop")) {
        notAvailable(command);
        return null;
    } else if (in(command, new String[] { "Translate...", "Scale..." })) {
        if (null != active)
            selection.specify();
        return null;
    } else if (command.equals("Duplicate...")) {
        if (null != active && active.getClass().equals(Patch.class)) {
            // TODO stacks?
            // 2.5 security factor: for awt in non-1.6.0 machines
            project.getLoader().releaseToFit((long) (project.getLoader().estimateImageFileSize((Patch) active, 0) * 2.5));
            new ImagePlus(active.getTitle(), ((Patch) active).getImageProcessor().duplicate()).show();
        }
        return null;
    } else if (command.equals("Rename...")) {
        if (null != active) {
            active.adjustProperties();
            Display.updateSelection();
        }
        return null;
    } else // IMAGE ROTATE menu
    if (command.equals("Flip Horizontally")) {
        selection.apply(2, new double[] { -1, 1 });
        return null;
    } else if (command.equals("Flip Vertically")) {
        selection.apply(2, new double[] { 1, -1 });
        return null;
    } else if (command.equals("Rotate 90 Degrees Right")) {
        selection.apply(1, new double[] { 90 });
        return null;
    } else if (command.equals("Rotate 90 Degrees Left")) {
        selection.apply(1, new double[] { -90 });
        return null;
    } else if (command.equals("Arbitrarily...")) {
        if (null != active)
            selection.specify();
        return null;
    } else // IMAGE ZOOM menu
    if (command.equals("To Selection")) {
        Roi roi = fimp.getRoi();
        if (null != roi) {
            Rectangle b = roi.getBounds();
            b.x -= b.width / 2;
            b.y -= b.height / 2;
            b.width *= 2;
            b.height *= 2;
            display.getCanvas().showCentered(b);
        }
        return null;
    } else if (command.equals("View 100%")) {
        // TODO
        niy(command);
        return null;
    } else // ANALYZE menu
    if (command.equals("Measure")) {
        // Minimal measurement: area of closed ROIs, length of unclosed ROIs, calibrated.
        Roi roi = fimp.getRoi();
        if (null != roi) {
            Calibration cal = fimp.getCalibration();
            AffineTransform caff = new AffineTransform();
            caff.scale(cal.pixelWidth, cal.pixelHeight);
            if (M.isAreaROI(roi)) {
                Area area = M.getArea(roi);
                area = area.createTransformedArea(caff);
                ResultsTable rt = Utils.createResultsTable("ROI area", new String[] { "area", "perimeter" });
                rt.incrementCounter();
                rt.addLabel("units", cal.getUnit());
                rt.addValue(0, Math.abs(AreaCalculations.area(area.getPathIterator(null))));
                rt.addValue(1, roi.getLength());
                rt.show("ROI area");
            } else {
                ResultsTable rt = Utils.createResultsTable("ROI length", new String[] { "length" });
                rt.incrementCounter();
                rt.addLabel("units", cal.getUnit());
                rt.addValue(0, roi.getLength());
                rt.show("ROI length");
            }
            return null;
        } else if (null != active) {
            // Measure the active displayable
            if (active.getClass() == Patch.class) {
                // measure like 'm' would in ImageJ for an image
                ImagePlus imp = ((Patch) active).getImagePlus();
                imp.setCalibration(active.getLayer().getParent().getCalibrationCopy());
                IJ.run(imp, "Measure", "");
            } else {
                // Call measure like ProjectThing does
                ProjectThing pt = active.getProject().findProjectThing(active);
                if (active instanceof Profile)
                    ((ProjectThing) pt.getParent()).measure();
                else
                    pt.measure();
            }
            return null;
        }
        Utils.log("Draw a ROI or select an object!");
        return null;
    } else if (in(command, new String[] { "Analyze Particles...", "Histogram", "Plot Profile", "Surface Plot...", "Color Inspector 3D", "3D Surface Plot", "Color Histogram" })) {
        return setTempCurrentImage(command, active);
    } else if (command.equals("Label")) {
        notAvailable(command);
        return null;
    } else // PLUGINS menu
    if (command.equals("Volume Viewer")) {
        return runOnVirtualLayerSet(command, layer_set, display);
    } else if (command.equals("3D Viewer")) {
        // it's virtual and non-caching, will appear as a regular ImageJ stack
        layer_set.createLayerStack(Displayable.class, ImagePlus.COLOR_RGB, display.getDisplayChannelAlphas()).getImagePlus().show();
        return command;
    } else // PROCESS menu and submenus
    if (in(command, new String[] { "FFT", "Fast FFT (2D/3D)" })) {
        return setTempCurrentImage(command, active);
    } else if (in(command, new String[] { "Bandpass Filter...", "Custom Filter...", "FD Math...", "Swap Quadrants", "Convolve...", "Gaussian Blur...", "Median...", "Mean...", "Minimum...", "Maximum...", "Unsharp Mask...", "Variance...", "Show Circular Masks...", "Subtract Background..." })) {
        return duplicate(command, active);
    } else if (in(command, new String[] { "Smooth", "Sharpen", "Find Edges", "Enhance Contrast", "Add Noise", "Add Specified Noise...", "Salt and Pepper", "Despeckle", "Remove Outliers...", "North", "Northeast", "East", "Southeast", "South", "Southwest", "West", "Northwest", "Make Binary", "Convert to Mask", "Find Maxima...", "Erode", "Dilate", "Open ", "Close-", "Outline", "Fill Holes", "Skeletonize", "Distance Map", "Ultimate Points", "Watershed", "Add...", "Subtract...", "Multiply...", "Divide...", "AND...", "OR...", "XOR...", "Min...", "Max...", "Gamma...", "Log", "Exp", "Square", "Square Root", "Reciprocal", "NaN Background", "Abs" })) {
        return duplicate(command, active);
    }
    /*else {
			// continue happily
			//Utils.log2("Skipping " + command);
		}*/
    // If it's part of "Save As", ignore it
    Menu menu = Menus.getSaveAsMenu();
    for (int i = menu.getItemCount() - 1; i > -1; i--) {
        if (command.equals(menu.getItem(i).getActionCommand())) {
            notAvailable(command);
            return null;
        }
    }
    // Give it back to ImageJ
    return command;
}

Example 13 with Project

use of org.openstack4j.model.identity.v3.Project in project TrakEM2 by trakem2.

the class ImageJCommandListener method duplicate.

/**
 * Duplicate the active image (if any) and set it as active, so the command is run on it.
 */
private String duplicate(final String command, final Displayable active) {
    if (!isPatch(command, active))
        return null;
    Patch pa = (Patch) active;
    Project project = pa.getProject();
    project.getLoader().releaseToFit((long) (project.getLoader().estimateImageFileSize(pa, 0) * 5));
    // don't show it yet
    ImagePlus imp = new ImagePlus("Copy of " + pa.getTitle(), pa.getImageProcessor().duplicate());
    WindowManager.setTempCurrentImage(imp);
    imp.show();
    // now execute command
    return command;
}

Example 14 with Project

use of org.openstack4j.model.identity.v3.Project in project TrakEM2 by trakem2.

the class ImageJCommandListener method setTempCurrentImage.

/**
 * Set as current image the Patch ImagePlus only for half a second, for a plugin to see it and grab a pointer.
 * YES this is a tremendous hack that may not work in all situations, but will be reasonably ok for PlugInFilter operations.
 * This action is intended for commands that don't alter the original image.
 */
private String setTempCurrentImage(final String command, final Displayable active) {
    if (!isPatch(command, active))
        return null;
    final Patch pa = (Patch) active;
    final Project project = pa.getProject();
    WindowManager.setTempCurrentImage(pa.getImagePlus());
    project.getLoader().releaseToFit((long) (project.getLoader().estimateImageFileSize(pa, 0) * 5));
    return command;
}

Example 15 with Project

use of org.openstack4j.model.identity.v3.Project in project TrakEM2 by trakem2.

the class DefaultTreeTransferHandler method canPerformAction.

public boolean canPerformAction(DNDTree target, DefaultMutableTreeNode dragged_node, int action, Point location) {
    // prevent drags from non-tree components
    if (null == dragged_node)
        return false;
    // Can't drop onto a TemplateTree
    if (target instanceof TemplateTree) {
        return false;
    }
    // Can't drag a node that contains a Project!
    if (dragged_node.getUserObject() instanceof ProjectThing && ((ProjectThing) dragged_node.getUserObject()).getObject() instanceof Project) {
        return false;
    }
    // Can't drag basic object nodes from a template tree RECONSIDERED, I like it even if it looks inconsistent (but types are types!)
    /*
		if (dragged_node.getUserObject() instanceof TemplateThing && project.isBasicType(((Thing)dragged_node.getUserObject()).getType())) {
			return false;
		}
		*/
    // else, the target has to be not null
    TreePath pathTarget = target.getPathForLocation(location.x, location.y);
    if (pathTarget == null) {
        target.setSelectionPath(null);
        return false;
    }
    /* // debug
		if (action == DnDConstants.ACTION_COPY) {
			Utils.log("can drop: Action copy");
		} else if (action == DnDConstants.ACTION_MOVE) {
			Utils.log("can drop: Action move");
		} else {
			Utils.log("can drop: Unexpected action: " + action);
		}
		*/
    target.setSelectionPath(pathTarget);
    DefaultMutableTreeNode parent_node = (DefaultMutableTreeNode) pathTarget.getLastPathComponent();
    // can be a Thing or an Attribute
    Object parent_ob = parent_node.getUserObject();
    Thing child_thing = (Thing) dragged_node.getUserObject();
    if (DnDConstants.ACTION_MOVE == action || DnDConstants.ACTION_COPY == action) {
        if (parent_ob instanceof ProjectThing) {
            ProjectThing parent_thing = (ProjectThing) parent_ob;
            // check if it's allowed to give to this parent such a child:
            if (!parent_thing.uniquePathExists(child_thing.getType()) && !parent_thing.canHaveAsChild(child_thing)) {
                // Utils.log("Not possible.");
                return false;
            }
            // - the leaf that is going to be dropped into itself or any of its descendants.
            if (parent_node == dragged_node.getParent() || dragged_node.isNodeDescendant(parent_node)) {
                // Utils.log("preventing dragging onto itself or any of the self children.");
                return false;
            } else {
                return true;
            }
        }
    }
    // default:
    return false;
}