Examples with ExternalIdentifiers org.orcid.jaxb.model.message.ExternalIdentifiers used on opensource projects

Example 11 with ExternalIdentifiers

use of org.orcid.jaxb.model.message.ExternalIdentifiers in project ORCID-Source by ORCID.

the class OrcidProfileManagerImplTest method testDefaultVisibilityForItemsAppliedOnUpdate.

@Test
@Transactional
@Rollback(true)
public void testDefaultVisibilityForItemsAppliedOnUpdate() {
    OrcidProfile profile = createBasicProfile();
    OrcidHistory orcidHistory = new OrcidHistory();
    orcidHistory.setClaimed(new Claimed(true));
    orcidHistory.setCreationMethod(CreationMethod.DIRECT);
    orcidHistory.setSubmissionDate(new SubmissionDate(DateUtils.convertToXMLGregorianCalendar(new Date())));
    profile.setOrcidHistory(orcidHistory);
    Keyword k = new Keyword("word", null);
    Keywords kk = new Keywords();
    kk.getKeyword().add(k);
    kk.setVisibility(Visibility.LIMITED);
    ResearcherUrl r = new ResearcherUrl(new Url("http://whatever.com"), null);
    ResearcherUrls rr = new ResearcherUrls();
    rr.getResearcherUrl().add(r);
    rr.setVisibility(Visibility.LIMITED);
    ExternalIdentifier i = new ExternalIdentifier(null);
    i.setExternalIdReference(new ExternalIdReference("ref"));
    i.setExternalIdCommonName(new ExternalIdCommonName("cn"));
    ExternalIdentifiers ii = new ExternalIdentifiers();
    ii.getExternalIdentifier().add(i);
    ii.setVisibility(Visibility.LIMITED);
    OtherNames oo = new OtherNames();
    oo.addOtherName("other", null);
    oo.setVisibility(Visibility.LIMITED);
    profile.getOrcidBio().setKeywords(kk);
    profile.getOrcidBio().setResearcherUrls(rr);
    profile.getOrcidBio().setExternalIdentifiers(ii);
    profile.getOrcidBio().getPersonalDetails().setOtherNames(oo);
    // Create the profile
    profile = orcidProfileManager.createOrcidProfile(profile, true, false);
    Preferences preferences = new Preferences();
    preferences.setSendChangeNotifications(new SendChangeNotifications(true));
    preferences.setSendOrcidNews(new SendOrcidNews(true));
    // Default visibility for user will be LIMITED
    preferences.setActivitiesVisibilityDefault(new ActivitiesVisibilityDefault(Visibility.LIMITED));
    preferences.setNotificationsEnabled(DefaultPreferences.NOTIFICATIONS_ENABLED);
    preferences.setSendEmailFrequencyDays(DefaultPreferences.SEND_EMAIL_FREQUENCY_DAYS);
    preferences.setSendMemberUpdateRequests(DefaultPreferences.SEND_MEMBER_UPDATE_REQUESTS);
    OrcidInternal internal = new OrcidInternal();
    internal.setPreferences(preferences);
    profile.setOrcidInternal(internal);
    profile.getOrcidInternal().getPreferences().setActivitiesVisibilityDefault(new ActivitiesVisibilityDefault(Visibility.LIMITED));
    // Claim the profile
    profile = orcidProfileManager.updateOrcidProfile(profile);
    // now attempt to alter privacy.  It should fail as record has been claimed.
    profile.getOrcidBio().getKeywords().setVisibility(Visibility.PUBLIC);
    profile.getOrcidBio().getResearcherUrls().setVisibility(Visibility.PUBLIC);
    profile.getOrcidBio().getExternalIdentifiers().setVisibility(Visibility.PUBLIC);
    profile.getOrcidBio().getPersonalDetails().getOtherNames().setVisibility(Visibility.PUBLIC);
    profile = orcidProfileManager.updateOrcidProfile(profile);
    assertEquals("word", profile.getOrcidBio().getKeywords().getKeyword().iterator().next().getContent());
    assertEquals(Visibility.LIMITED, profile.getOrcidBio().getKeywords().getKeyword().iterator().next().getVisibility());
    assertEquals(new Url("http://whatever.com"), profile.getOrcidBio().getResearcherUrls().getResearcherUrl().iterator().next().getUrl());
    assertEquals(Visibility.LIMITED, profile.getOrcidBio().getResearcherUrls().getResearcherUrl().iterator().next().getVisibility());
    assertEquals("cn", profile.getOrcidBio().getExternalIdentifiers().getExternalIdentifier().iterator().next().getExternalIdCommonName().getContent());
    assertEquals(Visibility.LIMITED, profile.getOrcidBio().getExternalIdentifiers().getExternalIdentifier().iterator().next().getVisibility());
    assertEquals("other", profile.getOrcidBio().getPersonalDetails().getOtherNames().getOtherName().iterator().next().getContent());
    assertEquals(Visibility.LIMITED, profile.getOrcidBio().getPersonalDetails().getOtherNames().getOtherName().iterator().next().getVisibility());
}

Example 12 with ExternalIdentifiers

use of org.orcid.jaxb.model.message.ExternalIdentifiers in project ORCID-Source by ORCID.

the class T2OrcidApiServiceDelegatorTest method testAddDuplicatedExtIdsDontModifyProfile.

@Test
public void testAddDuplicatedExtIdsDontModifyProfile() {
    String userOrcid = "0000-0000-0000-0005";
    OrcidMessage message = new OrcidMessage();
    message.setMessageVersion("1.2_rc6");
    message.setOrcidProfile(new OrcidProfile());
    message.getOrcidProfile().setOrcidBio(new OrcidBio());
    ExternalIdentifiers extIds = new ExternalIdentifiers();
    ExternalIdentifier extId1 = new ExternalIdentifier();
    String commonName = "common-name-1-" + System.currentTimeMillis();
    extId1.setExternalIdCommonName(new ExternalIdCommonName(commonName));
    extId1.setExternalIdReference(new ExternalIdReference("ext-id-reference-1"));
    extId1.setExternalIdUrl(new ExternalIdUrl("http://test.orcid.org/" + System.currentTimeMillis()));
    extIds.getExternalIdentifier().add(extId1);
    message.getOrcidProfile().getOrcidBio().setExternalIdentifiers(extIds);
    // Add for client 1
    SecurityContextTestUtils.setUpSecurityContext(userOrcid, "APP-5555555555555555", ScopePathType.PERSON_UPDATE, ScopePathType.PERSON_READ_LIMITED);
    Response r = t2OrcidApiServiceDelegator.addExternalIdentifiers(null, userOrcid, message);
    assertNotNull(r);
    OrcidMessage newMessage1 = (OrcidMessage) r.getEntity();
    assertNotNull(newMessage1);
    assertNotNull(newMessage1.getOrcidProfile());
    assertNotNull(newMessage1.getOrcidProfile().getOrcidBio());
    assertNotNull(newMessage1.getOrcidProfile().getOrcidBio().getExternalIdentifiers());
    assertNotNull(newMessage1.getOrcidProfile().getOrcidBio().getExternalIdentifiers().getExternalIdentifier());
    assertEquals(1, newMessage1.getOrcidProfile().getOrcidBio().getExternalIdentifiers().getExternalIdentifier().size());
    assertEquals(commonName, newMessage1.getOrcidProfile().getOrcidBio().getExternalIdentifiers().getExternalIdentifier().get(0).getExternalIdCommonName().getContent());
    assertEquals("APP-5555555555555555", newMessage1.getOrcidProfile().getOrcidBio().getExternalIdentifiers().getExternalIdentifier().get(0).getSource().retrieveSourcePath());
    // Reset message to add it again
    message = new OrcidMessage();
    message.setMessageVersion("1.2_rc6");
    message.setOrcidProfile(new OrcidProfile());
    message.getOrcidProfile().setOrcidBio(new OrcidBio());
    extId1.setSource(null);
    message.getOrcidProfile().getOrcidBio().setExternalIdentifiers(extIds);
    r = t2OrcidApiServiceDelegator.addExternalIdentifiers(null, userOrcid, message);
    // If we add it again, no error, but it is not duplicated
    assertNotNull(r);
    OrcidMessage newMessage2 = (OrcidMessage) r.getEntity();
    assertNotNull(newMessage2);
    assertNotNull(newMessage2.getOrcidProfile());
    assertNotNull(newMessage2.getOrcidProfile().getOrcidBio());
    assertNotNull(newMessage2.getOrcidProfile().getOrcidBio().getExternalIdentifiers());
    assertNotNull(newMessage2.getOrcidProfile().getOrcidBio().getExternalIdentifiers().getExternalIdentifier());
    assertEquals(1, newMessage2.getOrcidProfile().getOrcidBio().getExternalIdentifiers().getExternalIdentifier().size());
    assertEquals(commonName, newMessage2.getOrcidProfile().getOrcidBio().getExternalIdentifiers().getExternalIdentifier().get(0).getExternalIdCommonName().getContent());
    assertEquals("APP-5555555555555555", newMessage2.getOrcidProfile().getOrcidBio().getExternalIdentifiers().getExternalIdentifier().get(0).getSource().retrieveSourcePath());
}

Example 13 with ExternalIdentifiers

use of org.orcid.jaxb.model.message.ExternalIdentifiers in project ORCID-Source by ORCID.

the class OrcidProfileManagerImpl method deactivateOrcidProfile.

@Override
@Transactional
@Deprecated
public OrcidProfile deactivateOrcidProfile(OrcidProfile existingOrcidProfile) {
    OrcidProfile blankedOrcidProfile = new OrcidProfile();
    OrcidBio existingBio = existingOrcidProfile.getOrcidBio();
    OrcidBio minimalBio = new OrcidBio();
    ContactDetails minimalContactDetails = new ContactDetails();
    minimalContactDetails.getEmail().addAll(existingBio.getContactDetails().getEmail());
    OrcidInternal minimalOrcidInternal = new OrcidInternal();
    minimalOrcidInternal.setSecurityDetails(existingOrcidProfile.getOrcidInternal().getSecurityDetails());
    OrcidHistory deactivatedOrcidHistory = existingOrcidProfile.getOrcidHistory();
    deactivatedOrcidHistory.setDeactivationDate(new DeactivationDate(DateUtils.convertToXMLGregorianCalendar(new Date())));
    blankedOrcidProfile.setOrcidHistory(deactivatedOrcidHistory);
    // only names names from bio with a visibility setting
    PersonalDetails minimalPersonalDetails = new PersonalDetails();
    minimalPersonalDetails.setOtherNames(null);
    CreditName creditName = new CreditName();
    creditName.setVisibility(Visibility.PUBLIC);
    minimalPersonalDetails.setCreditName(creditName);
    minimalPersonalDetails.setGivenNames(new GivenNames("Given Names Deactivated"));
    minimalPersonalDetails.setFamilyName(new FamilyName("Family Name Deactivated"));
    for (Email email : minimalContactDetails.getEmail()) {
        setVisibilityToPrivate(email);
    }
    setVisibilityToPrivate(minimalPersonalDetails.getOtherNames());
    if (minimalPersonalDetails.getOtherNames() != null && minimalPersonalDetails.getOtherNames().getOtherName() != null) {
        for (OtherName name : minimalPersonalDetails.getOtherNames().getOtherName()) setVisibilityToPrivate(name);
    }
    minimalBio.setPersonalDetails(minimalPersonalDetails);
    minimalBio.setContactDetails(minimalContactDetails);
    minimalBio.setBiography(new Biography());
    minimalBio.setExternalIdentifiers(new ExternalIdentifiers());
    blankedOrcidProfile.setOrcidBio(minimalBio);
    blankedOrcidProfile.setOrcidIdentifier(existingOrcidProfile.getOrcidIdentifier().getPath());
    OrcidProfile profileToReturn = updateOrcidProfile(blankedOrcidProfile);
    userConnectionDao.deleteByOrcid(existingOrcidProfile.getOrcidIdentifier().getPath());
    notificationManager.sendAmendEmail(profileToReturn, AmendedSection.UNKNOWN);
    return profileToReturn;
}

Example 14 with ExternalIdentifiers

use of org.orcid.jaxb.model.message.ExternalIdentifiers in project ORCID-Source by ORCID.

the class OrcidMessageUtil method setSourceName.

public void setSourceName(OrcidProfile orcidProfile) {
    if (orcidProfile != null) {
        if (orcidProfile.getOrcidActivities() != null) {
            OrcidActivities orcidActivities = orcidProfile.getOrcidActivities();
            if (orcidActivities.getAffiliations() != null) {
                Affiliations affs = orcidActivities.getAffiliations();
                List<Affiliation> affList = affs.getAffiliation();
                if (affList != null) {
                    for (Affiliation aff : affList) {
                        setSourceName(aff);
                    }
                }
            }
            if (orcidActivities.getFundings() != null) {
                FundingList fundingList = orcidActivities.getFundings();
                List<Funding> fundings = fundingList.getFundings();
                if (fundings != null) {
                    for (Funding funding : fundings) {
                        setSourceName(funding);
                    }
                }
            }
            if (orcidActivities.getOrcidWorks() != null) {
                OrcidWorks orcidWorks = orcidActivities.getOrcidWorks();
                List<OrcidWork> works = orcidWorks.getOrcidWork();
                if (works != null) {
                    for (OrcidWork work : works) {
                        setSourceName(work);
                    }
                }
            }
        }
        if (orcidProfile.getOrcidBio() != null) {
            OrcidBio orcidBio = orcidProfile.getOrcidBio();
            if (orcidBio.getContactDetails() != null) {
                Address address = orcidBio.getContactDetails().getAddress();
                if (address != null) {
                    setSourceName(address);
                }
            }
            if (orcidBio.getExternalIdentifiers() != null) {
                ExternalIdentifiers extIds = orcidBio.getExternalIdentifiers();
                List<ExternalIdentifier> extIdsList = extIds.getExternalIdentifier();
                if (extIdsList != null) {
                    for (ExternalIdentifier extId : extIdsList) {
                        setSourceName(extId);
                    }
                }
            }
            if (orcidBio.getKeywords() != null) {
                Keywords keywords = orcidBio.getKeywords();
                List<Keyword> keywordList = keywords.getKeyword();
                if (keywordList != null) {
                    for (Keyword keyword : keywordList) {
                        setSourceName(keyword);
                    }
                }
            }
            if (orcidBio.getPersonalDetails() != null) {
                OtherNames otherNames = orcidBio.getPersonalDetails().getOtherNames();
                if (otherNames != null) {
                    List<OtherName> otherNameList = otherNames.getOtherName();
                    if (otherNameList != null) {
                        for (OtherName otherName : otherNameList) {
                            setSourceName(otherName);
                        }
                    }
                }
            }
            if (orcidBio.getResearcherUrls() != null) {
                ResearcherUrls rUrls = orcidBio.getResearcherUrls();
                List<ResearcherUrl> rUrlList = rUrls.getResearcherUrl();
                if (rUrlList != null) {
                    for (ResearcherUrl rUrl : rUrlList) {
                        setSourceName(rUrl);
                    }
                }
            }
        }
    }
}

Example 15 with ExternalIdentifiers

use of org.orcid.jaxb.model.message.ExternalIdentifiers in project ORCID-Source by ORCID.

the class OrcidProfileManagerImplTest method testDeactivateProfile.

@Test
@Transactional
@Rollback(true)
public void testDeactivateProfile() {
    OrcidProfile profile1 = createBasicProfile();
    profile1.getOrcidBio().getPersonalDetails().setCreditName(new CreditName("My Credit Name"));
    ExternalIdentifiers extIds = new ExternalIdentifiers();
    ExternalIdentifier extId = new ExternalIdentifier();
    extId.setExternalIdCommonName(new ExternalIdCommonName("External body"));
    extId.setExternalIdReference(new ExternalIdReference("abc123"));
    extIds.getExternalIdentifier().add(extId);
    profile1.getOrcidBio().setExternalIdentifiers(extIds);
    OtherNames otherNames = new OtherNames();
    otherNames.addOtherName("OtherName 1", null);
    otherNames.addOtherName("OtherName 2", null);
    profile1.getOrcidBio().getPersonalDetails().setOtherNames(otherNames);
    profile1 = orcidProfileManager.createOrcidProfile(profile1, false, false);
    assertEquals(1, profile1.getOrcidBio().getExternalIdentifiers().getExternalIdentifier().size());
    assertEquals(2, profile1.getOrcidBio().getPersonalDetails().getOtherNames().getOtherName().size());
    assertEquals("My Credit Name", profile1.getOrcidBio().getPersonalDetails().getCreditName().getContent());
    assertEquals(Visibility.PRIVATE, profile1.getOrcidBio().getExternalIdentifiers().getExternalIdentifier().iterator().next().getVisibility());
    orcidProfileManager.deactivateOrcidProfile(profile1);
    OrcidProfile retrievedProfile = orcidProfileManager.retrieveOrcidProfile(profile1.getOrcidIdentifier().getPath());
    assertTrue(retrievedProfile.getOrcidBio().getExternalIdentifiers().getExternalIdentifier().isEmpty());
    assertNull(retrievedProfile.getOrcidBio().getPersonalDetails().getCreditName());
    assertEquals(0, retrievedProfile.getOrcidBio().getPersonalDetails().getOtherNames().getOtherName().size());
    assertEquals("Given Names Deactivated", retrievedProfile.getOrcidBio().getPersonalDetails().getGivenNames().getContent());
    assertEquals("Family Name Deactivated", retrievedProfile.getOrcidBio().getPersonalDetails().getFamilyName().getContent());
    assertNull(retrievedProfile.getOrcidBio().getBiography().getContent());
}