Examples with Funding org.orcid.jaxb.model.message.Funding used on opensource projects

Example 6 with Funding

use of org.orcid.jaxb.model.message.Funding in project ORCID-Source by ORCID.

the class Api12MembersTest method activitiesReadLimitedTest.

@Test
public void activitiesReadLimitedTest() throws InterruptedException, JSONException {
    changeDefaultUserVisibility(org.orcid.jaxb.model.common_v2.Visibility.PUBLIC);
    String clientId = getClient1ClientId();
    String clientRedirectUri = getClient1RedirectUri();
    String clientSecret = getClient1ClientSecret();
    String userId = getUser1OrcidId();
    String password = getUser1Password();
    String workTitle = "Work " + System.currentTimeMillis();
    String fundingTitle = "Funding " + System.currentTimeMillis();
    String orgName = "Org_" + System.currentTimeMillis();
    String accessToken = getAccessToken(userId, password, Arrays.asList("/read-limited", "/activities/update"), clientId, clientSecret, clientRedirectUri, true);
    Long workPutCode = null;
    Api12Helper.addWork(userId, accessToken, workTitle, t2OAuthClient_1_2);
    Long fundingPutCode = null;
    Api12Helper.addFunding(userId, accessToken, fundingTitle, t2OAuthClient_1_2);
    Long affiliationPutCode = null;
    Api12Helper.addAffiliation(userId, accessToken, orgName, t2OAuthClient_1_2);
    ClientResponse worksResponse = t2OAuthClient_1_2.viewWorksDetailsXml(userId, accessToken);
    assertNotNull(worksResponse);
    assertEquals(200, worksResponse.getStatus());
    assertEquals("application/vnd.orcid+xml; charset=UTF-8; qs=5", worksResponse.getType().toString());
    OrcidMessage orcidMessageWithNewWork = worksResponse.getEntity(OrcidMessage.class);
    assertNotNull(orcidMessageWithNewWork);
    assertNotNull(orcidMessageWithNewWork.getOrcidProfile());
    assertNotNull(orcidMessageWithNewWork.getOrcidProfile().getOrcidActivities());
    assertNotNull(orcidMessageWithNewWork.getOrcidProfile().getOrcidActivities().getOrcidWorks());
    assertNotNull(orcidMessageWithNewWork.getOrcidProfile().getOrcidActivities().getOrcidWorks().getOrcidWork());
    assertTrue(orcidMessageWithNewWork.getOrcidProfile().getOrcidActivities().getOrcidWorks().getOrcidWork().size() > 0);
    boolean workFound = false;
    for (OrcidWork work : orcidMessageWithNewWork.getOrcidProfile().getOrcidActivities().getOrcidWorks().getOrcidWork()) {
        if (workTitle.equals(work.getWorkTitle().getTitle().getContent())) {
            // Default user visibility should be public
            assertEquals(Visibility.PUBLIC, work.getVisibility());
            assertNotNull(work.getPutCode());
            workPutCode = Long.valueOf(work.getPutCode());
            workFound = true;
        }
    }
    assertTrue(workFound);
    ClientResponse fundingResponse = t2OAuthClient_1_2.viewFundingDetailsXml(userId, accessToken);
    assertNotNull(fundingResponse);
    assertEquals(200, fundingResponse.getStatus());
    assertEquals("application/vnd.orcid+xml; charset=UTF-8; qs=5", fundingResponse.getType().toString());
    OrcidMessage orcidMessageWithNewFunding = fundingResponse.getEntity(OrcidMessage.class);
    assertNotNull(orcidMessageWithNewFunding);
    assertNotNull(orcidMessageWithNewFunding.getOrcidProfile());
    assertNotNull(orcidMessageWithNewFunding.getOrcidProfile().getOrcidActivities());
    assertNotNull(orcidMessageWithNewFunding.getOrcidProfile().getOrcidActivities().getFundings());
    assertNotNull(orcidMessageWithNewFunding.getOrcidProfile().getOrcidActivities().getFundings().getFundings());
    assertTrue(orcidMessageWithNewFunding.getOrcidProfile().getOrcidActivities().getFundings().getFundings().size() > 0);
    boolean fundingFound = false;
    for (Funding funding : orcidMessageWithNewFunding.getOrcidProfile().getOrcidActivities().getFundings().getFundings()) {
        if (fundingTitle.equals(funding.getTitle().getTitle().getContent())) {
            // Default user visibility should be public
            assertEquals(Visibility.PUBLIC, funding.getVisibility());
            assertNotNull(funding.getPutCode());
            fundingPutCode = Long.valueOf(funding.getPutCode());
            fundingFound = true;
        }
    }
    assertTrue(fundingFound);
    ClientResponse affiliationResponse = t2OAuthClient_1_2.viewAffiliationDetailsXml(userId, accessToken);
    assertNotNull(affiliationResponse);
    assertEquals(200, affiliationResponse.getStatus());
    assertEquals("application/vnd.orcid+xml; charset=UTF-8; qs=5", affiliationResponse.getType().toString());
    OrcidMessage orcidMessageWithNewAffiliation = affiliationResponse.getEntity(OrcidMessage.class);
    assertNotNull(orcidMessageWithNewAffiliation);
    assertNotNull(orcidMessageWithNewAffiliation.getOrcidProfile());
    assertNotNull(orcidMessageWithNewAffiliation.getOrcidProfile().getOrcidActivities());
    assertNotNull(orcidMessageWithNewAffiliation.getOrcidProfile().getOrcidActivities().getAffiliations());
    assertNotNull(orcidMessageWithNewAffiliation.getOrcidProfile().getOrcidActivities().getAffiliations().getAffiliation());
    assertTrue(orcidMessageWithNewAffiliation.getOrcidProfile().getOrcidActivities().getAffiliations().getAffiliation().size() > 0);
    boolean affiliationFound = false;
    for (Affiliation affiliation : orcidMessageWithNewAffiliation.getOrcidProfile().getOrcidActivities().getAffiliations().getAffiliation()) {
        if (orgName.equals(affiliation.getOrganization().getName())) {
            // Default user visibility should be public
            assertEquals(Visibility.PUBLIC, affiliation.getVisibility());
            assertNotNull(affiliation.getPutCode());
            affiliationPutCode = Long.valueOf(affiliation.getPutCode());
            affiliationFound = true;
        }
    }
    assertTrue(affiliationFound);
    // Delete work
    ClientResponse deleteResponse = memberV2ApiClient.deleteWorkXml(this.getUser1OrcidId(), workPutCode, accessToken);
    assertEquals(Response.Status.NO_CONTENT.getStatusCode(), deleteResponse.getStatus());
    // Delete funding
    deleteResponse = memberV2ApiClient.deleteFundingXml(this.getUser1OrcidId(), fundingPutCode, accessToken);
    assertEquals(Response.Status.NO_CONTENT.getStatusCode(), deleteResponse.getStatus());
    // Delete affiliation
    deleteResponse = memberV2ApiClient.deleteEducationXml(this.getUser1OrcidId(), affiliationPutCode, accessToken);
    assertEquals(Response.Status.NO_CONTENT.getStatusCode(), deleteResponse.getStatus());
}

Example 7 with Funding

use of org.orcid.jaxb.model.message.Funding in project ORCID-Source by ORCID.

the class Api12Helper method addFunding.

protected static void addFunding(String userOrcid, String token, String title, T2OAuthAPIService<ClientResponse> oauthT2Client) {
    OrcidMessage orcidMessage = new OrcidMessage();
    orcidMessage.setMessageVersion(OrcidMessage.DEFAULT_VERSION);
    OrcidProfile orcidProfile = new OrcidProfile();
    orcidMessage.setOrcidProfile(orcidProfile);
    OrcidActivities orcidActivities = new OrcidActivities();
    orcidProfile.setOrcidActivities(orcidActivities);
    FundingList fundings = new FundingList();
    Funding funding = new Funding();
    funding.setVisibility(Visibility.LIMITED);
    FundingTitle fundingTitle = new FundingTitle();
    fundingTitle.setTitle(new Title(title));
    funding.setTitle(fundingTitle);
    funding.setType(FundingType.SALARY_AWARD);
    Amount amount = new Amount();
    amount.setCurrencyCode("CRC");
    amount.setContent("1,250,000");
    funding.setAmount(amount);
    funding.setStartDate(new FuzzyDate(2010, 1, 1));
    funding.setEndDate(new FuzzyDate(2013, 1, 1));
    funding.setDescription("My Grant description");
    funding.setUrl(new Url("http://url.com"));
    Organization org = new Organization();
    org.setName("Orcid Integration Test Org");
    OrganizationAddress add = new OrganizationAddress();
    add.setCity("My City");
    add.setCountry(Iso3166Country.CR);
    org.setAddress(add);
    funding.setOrganization(org);
    FundingExternalIdentifier extIdentifier = new FundingExternalIdentifier();
    extIdentifier.setType(FundingExternalIdentifierType.fromValue("grant_number"));
    extIdentifier.setUrl(new Url("http://url.com"));
    extIdentifier.setValue("My value");
    FundingExternalIdentifiers extIdentifiers = new FundingExternalIdentifiers();
    extIdentifiers.getFundingExternalIdentifier().add(extIdentifier);
    funding.setFundingExternalIdentifiers(extIdentifiers);
    FundingContributors contributors = new FundingContributors();
    FundingContributor contributor = new FundingContributor();
    contributor.setCreditName(new CreditName("My Credit Name"));
    contributor.setContributorEmail(new ContributorEmail("my.email@orcid-integration-test.com"));
    FundingContributorAttributes attributes = new FundingContributorAttributes();
    attributes.setContributorRole(FundingContributorRole.LEAD);
    contributor.setContributorAttributes(attributes);
    contributors.getContributor().add(contributor);
    funding.setFundingContributors(contributors);
    fundings.getFundings().add(funding);
    orcidMessage.getOrcidProfile().getOrcidActivities().setFundings(fundings);
    ClientResponse clientResponse = oauthT2Client.addFundingXml(userOrcid, orcidMessage, token);
    assertEquals(201, clientResponse.getStatus());
}

Example 8 with Funding

use of org.orcid.jaxb.model.message.Funding in project ORCID-Source by ORCID.

the class Jaxb2JpaAdapterImpl method setFundings.

private void setFundings(ProfileEntity profileEntity, FundingList orcidFundings) {
    SortedSet<ProfileFundingEntity> existingProfileFundingEntities = profileEntity.getProfileFunding();
    if (existingProfileFundingEntities == null) {
        existingProfileFundingEntities = new TreeSet<>();
    }
    // Create a map containing the existing profile funding entities
    Map<String, ProfileFundingEntity> existingProfileFundingEntitiesMap = createProfileFundingEntitiesMap(existingProfileFundingEntities);
    // A set that will contain the updated profile funding entities that
    // comes from the orcidGrant object
    SortedSet<ProfileFundingEntity> updatedProfileFundingEntities = new TreeSet<>();
    // from the fundingList object
    if (orcidFundings != null && orcidFundings.getFundings() != null && !orcidFundings.getFundings().isEmpty()) {
        for (Funding orcidFunding : orcidFundings.getFundings()) {
            ProfileFundingEntity newProfileGrantEntity = getProfileFundingEntity(orcidFunding, existingProfileFundingEntitiesMap.get(orcidFunding.getPutCode()));
            newProfileGrantEntity.setProfile(profileEntity);
            updatedProfileFundingEntities.add(newProfileGrantEntity);
        }
    }
    // Create a map containing the profile funding that comes in the
    // orcidGrant object and that will be persisted
    Map<String, ProfileFundingEntity> updatedProfileGrantEntitiesMap = createProfileFundingEntitiesMap(updatedProfileFundingEntities);
    // Remove orphans
    for (Iterator<ProfileFundingEntity> iterator = existingProfileFundingEntities.iterator(); iterator.hasNext(); ) {
        ProfileFundingEntity existingEntity = iterator.next();
        if (!updatedProfileGrantEntitiesMap.containsKey(String.valueOf(existingEntity.getId()))) {
            iterator.remove();
        }
    }
    // Add new
    for (ProfileFundingEntity updatedEntity : updatedProfileFundingEntities) {
        if (updatedEntity.getId() == null) {
            existingProfileFundingEntities.add(updatedEntity);
        }
    }
    profileEntity.setProfileFunding(existingProfileFundingEntities);
}

Example 9 with Funding

use of org.orcid.jaxb.model.message.Funding in project ORCID-Source by ORCID.

the class OrcidMessageVersionConverterImplV1_2_rc3ToV1_2_rc4 method downgradeProfile.

private void downgradeProfile(OrcidProfile orcidProfile) {
    if (orcidProfile != null) {
        if (orcidProfile.getOrcidHistory() != null) {
            if (orcidProfile.getOrcidHistory().getVerifiedEmail() != null) {
                orcidProfile.getOrcidHistory().setVerifiedEmail(null);
            }
            if (orcidProfile.getOrcidHistory().getVerifiedPrimaryEmail() != null) {
                orcidProfile.getOrcidHistory().setVerifiedPrimaryEmail(null);
            }
        }
        if (orcidProfile.getOrcidInternal() != null) {
            // earlier versions of the XSD don't have GroupOrcidIdentifier 
            if (orcidProfile.getOrcidInternal().getReferredBy() != null) {
                orcidProfile.getOrcidInternal().setReferredBy(null);
            }
            // earlier versions of the XSD don't have 
            if (orcidProfile.getOrcidInternal().getPreferences() != null && orcidProfile.getOrcidInternal().getPreferences().getDeveloperToolsEnabled() != null) {
                orcidProfile.getOrcidInternal().getPreferences().setDeveloperToolsEnabled(null);
            }
        }
        if (orcidProfile.getOrcidInternal() != null) {
            if (orcidProfile.getOrcidInternal().getPreferences() != null) {
                Preferences prefs = orcidProfile.getOrcidInternal().getPreferences();
                if (prefs.getActivitiesVisibilityDefault() != null && prefs.getActivitiesVisibilityDefault().getValue() != null) {
                    prefs.setWorkVisibilityDefault(new WorkVisibilityDefault(prefs.getActivitiesVisibilityDefault().getValue()));
                    prefs.setActivitiesVisibilityDefault(null);
                }
            }
        }
        //Previews versions doesnt have organization defined funding type
        if (orcidProfile.getOrcidActivities() != null) {
            OrcidActivities activities = orcidProfile.getOrcidActivities();
            if (activities.getFundings() != null) {
                FundingList fundingList = activities.getFundings();
                for (Funding funding : fundingList.getFundings()) {
                    funding.setOrganizationDefinedFundingType(null);
                }
            }
        }
    }
}

Example 10 with Funding

use of org.orcid.jaxb.model.message.Funding in project ORCID-Source by ORCID.

the class OrcidProfileToSolrDocument method convert.

@Deprecated
public OrcidSolrDocument convert(OrcidProfile profile) {
    // Check if the profile is locked
    if (profile.isLocked()) {
        profile.downgradeToOrcidIdentifierOnly();
    }
    OrcidSolrDocument profileIndexDocument = new OrcidSolrDocument();
    profileIndexDocument.setOrcid(profile.getOrcidIdentifier().getPath());
    OrcidDeprecated orcidDeprecated = profile.getOrcidDeprecated();
    if (orcidDeprecated != null) {
        profileIndexDocument.setPrimaryRecord(orcidDeprecated.getPrimaryRecord() != null ? orcidDeprecated.getPrimaryRecord().getOrcidIdentifier().getPath() : null);
    }
    OrcidBio orcidBio = profile.getOrcidBio();
    if (orcidBio != null) {
        PersonalDetails personalDetails = orcidBio.getPersonalDetails();
        boolean persistPersonalDetails = personalDetails != null;
        if (persistPersonalDetails) {
            profileIndexDocument.setFamilyName(personalDetails.getFamilyName() != null ? personalDetails.getFamilyName().getContent() : null);
            profileIndexDocument.setGivenNames(personalDetails.getGivenNames() != null ? personalDetails.getGivenNames().getContent() : null);
            profileIndexDocument.setCreditName(personalDetails.getCreditName() != null ? personalDetails.getCreditName().getContent() : null);
            List<OtherName> otherNames = personalDetails.getOtherNames() != null ? personalDetails.getOtherNames().getOtherName() : null;
            if (otherNames != null && !otherNames.isEmpty()) {
                List<String> names = new ArrayList<String>();
                for (OtherName otherName : otherNames) {
                    names.add(otherName.getContent());
                }
                profileIndexDocument.setOtherNames(names);
            }
        }
        ContactDetails contactDetails = orcidBio.getContactDetails();
        if (contactDetails != null) {
            for (Email email : contactDetails.getEmail()) {
                profileIndexDocument.addEmailAddress(email.getValue());
            }
        }
        ExternalIdentifiers externalIdentifiers = orcidBio.getExternalIdentifiers();
        if (externalIdentifiers != null) {
            List<String> extIdOrcids = new ArrayList<String>();
            List<String> extIdRefs = new ArrayList<String>();
            List<String> extIdOrcidsAndRefs = new ArrayList<String>();
            for (ExternalIdentifier externalIdentifier : externalIdentifiers.getExternalIdentifier()) {
                Source source = externalIdentifier.getSource();
                String sourcePath = null;
                if (source != null) {
                    sourcePath = source.retrieveSourcePath();
                    if (sourcePath != null) {
                        extIdOrcids.add(sourcePath);
                    }
                }
                ExternalIdReference externalIdReference = externalIdentifier.getExternalIdReference();
                if (externalIdReference != null) {
                    extIdRefs.add(externalIdReference.getContent());
                }
                if (NullUtils.noneNull(sourcePath, externalIdReference)) {
                    extIdOrcidsAndRefs.add(sourcePath + "=" + externalIdReference.getContent());
                }
            }
            if (!extIdOrcids.isEmpty()) {
                profileIndexDocument.setExternalIdSources(extIdOrcids);
            }
            if (!extIdRefs.isEmpty()) {
                profileIndexDocument.setExternalIdReferences(extIdRefs);
            }
            if (!extIdOrcidsAndRefs.isEmpty()) {
                profileIndexDocument.setExternalIdSourcesAndReferences(extIdOrcidsAndRefs);
            }
        }
        OrcidActivities orcidActivities = profile.getOrcidActivities();
        if (orcidActivities != null) {
            if (orcidBio != null && orcidBio.getKeywords() != null) {
                List<Keyword> keyWords = orcidBio.getKeywords().getKeyword();
                if (keyWords != null && keyWords.size() > 0) {
                    List<String> keywordValues = new ArrayList<String>();
                    for (Keyword keyword : keyWords) {
                        keywordValues.add(keyword.getContent());
                    }
                    profileIndexDocument.setKeywords(keywordValues);
                }
            }
        }
        List<OrcidWork> orcidWorks = profile.retrieveOrcidWorks() != null ? profile.retrieveOrcidWorks().getOrcidWork() : null;
        if (orcidWorks != null) {
            List<String> workTitles = new ArrayList<String>();
            Map<WorkExternalIdentifierType, List<String>> allExternalIdentifiers = new HashMap<WorkExternalIdentifierType, List<String>>();
            for (OrcidWork orcidWork : orcidWorks) {
                if (orcidWork.getWorkExternalIdentifiers() != null) {
                    for (WorkExternalIdentifier workExternalIdentifier : orcidWork.getWorkExternalIdentifiers().getWorkExternalIdentifier()) {
                        /**
                             * Creates a map that contains all different
                             * external identifiers for the current work
                             */
                        boolean nullSafeCheckForWorkExternalIdentifier = workExternalIdentifier.getWorkExternalIdentifierId() != null && !StringUtils.isBlank(workExternalIdentifier.getWorkExternalIdentifierId().getContent());
                        if (nullSafeCheckForWorkExternalIdentifier) {
                            WorkExternalIdentifierType type = workExternalIdentifier.getWorkExternalIdentifierType();
                            if (!allExternalIdentifiers.containsKey(type)) {
                                List<String> content = new ArrayList<String>();
                                content.add(workExternalIdentifier.getWorkExternalIdentifierId().getContent());
                                allExternalIdentifiers.put(type, content);
                            } else {
                                allExternalIdentifiers.get(type).add(workExternalIdentifier.getWorkExternalIdentifierId().getContent());
                            }
                        }
                    }
                }
                if (orcidWork.getWorkTitle() != null) {
                    Title workMainTitle = orcidWork.getWorkTitle().getTitle();
                    Subtitle worksubTitle = orcidWork.getWorkTitle().getSubtitle();
                    TranslatedTitle translatedTitle = orcidWork.getWorkTitle().getTranslatedTitle();
                    if (workMainTitle != null && !StringUtils.isBlank(workMainTitle.getContent())) {
                        workTitles.add(workMainTitle.getContent());
                    }
                    if (worksubTitle != null && !StringUtils.isBlank(worksubTitle.getContent())) {
                        workTitles.add(worksubTitle.getContent());
                    }
                    if (translatedTitle != null && !StringUtils.isBlank(translatedTitle.getContent())) {
                        workTitles.add(translatedTitle.getContent());
                    }
                }
            }
            profileIndexDocument.setWorkTitles(workTitles);
            // Set the list of external identifiers to the document list
            addExternalIdentifiersToIndexDocument(profileIndexDocument, allExternalIdentifiers);
        }
        List<Funding> orcidFundings = profile.retrieveFundings() != null ? profile.retrieveFundings().getFundings() : null;
        if (orcidFundings != null) {
            List<String> fundingTitle = new ArrayList<String>();
            for (Funding orcidFunding : orcidFundings) {
                FundingTitle title = orcidFunding.getTitle();
                if (title != null) {
                    if (title.getTitle() != null && !StringUtils.isBlank(title.getTitle().getContent())) {
                        fundingTitle.add(title.getTitle().getContent());
                    }
                    if (title.getTranslatedTitle() != null && StringUtils.isBlank(title.getTranslatedTitle().getContent())) {
                        fundingTitle.add(title.getTranslatedTitle().getContent());
                    }
                }
            }
            profileIndexDocument.setFundingTitles(fundingTitle);
        }
    }
    OrcidMessage orcidMessage = new OrcidMessage();
    orcidMessage.setMessageVersion(OrcidMessage.DEFAULT_VERSION);
    orcidMessage.setOrcidProfile(profile);
    OrcidHistory orcidHistory = profile.getOrcidHistory();
    if (orcidHistory != null) {
        LastModifiedDate lastModifiedDate = orcidHistory.getLastModifiedDate();
        if (lastModifiedDate != null) {
            profileIndexDocument.setProfileLastModifiedDate(lastModifiedDate.getValue().toGregorianCalendar().getTime());
        }
        SubmissionDate submissionDate = orcidHistory.getSubmissionDate();
        if (submissionDate != null) {
            profileIndexDocument.setProfileSubmissionDate(submissionDate.getValue().toGregorianCalendar().getTime());
        }
    }
    return profileIndexDocument;
}