Examples with OtherName org.orcid.jaxb.model.message.OtherName used on opensource projects

Example 6 with OtherName

use of org.orcid.jaxb.model.message.OtherName in project ORCID-Source by ORCID.

the class Jaxb2JpaAdapterImpl method setOtherNames.

private void setOtherNames(ProfileEntity profileEntity, OtherNames otherNames) {
    String sourceId = getSourceId();
    SortedSet<OtherNameEntity> existingOtherNameEntities = profileEntity.getOtherNames();
    Iterator<OtherNameEntity> existingIt = null;
    if (existingOtherNameEntities != null) {
        existingIt = existingOtherNameEntities.iterator();
    }
    // Iterate over the list of existing elements, to see which ones still exists but preserving all the ones where the calling client is not the source of
    if (existingIt != null) {
        while (existingIt.hasNext()) {
            OtherNameEntity existing = existingIt.next();
            String existingElementSource = existing.getElementSourceId();
            if (sourceId != null && !sourceId.equals(existingElementSource)) {
            // If am not the source of this element, do nothing
            } else {
                // If am the source, check if the element exists in the list of incoming elements
                String value = existing.getDisplayName();
                boolean found = false;
                if (otherNames != null && otherNames.getOtherName() != null) {
                    for (OtherName newOtherName : otherNames.getOtherName()) {
                        if (Objects.equals(value, newOtherName.getContent())) {
                            found = true;
                            break;
                        }
                    }
                }
                // If it doesn't exists, remove it from the existing elements
                if (!found) {
                    existingIt.remove();
                }
            }
        }
    }
    // Iterate over the list of all new ones and add the ones that doesn't exists yet
    if (otherNames != null && otherNames.getOtherName() != null) {
        for (OtherName newOtherName : otherNames.getOtherName()) {
            boolean exists = false;
            if (existingOtherNameEntities != null) {
                for (OtherNameEntity existingEntity : existingOtherNameEntities) {
                    if (Objects.equals(newOtherName.getContent(), existingEntity.getDisplayName())) {
                        exists = true;
                        // If the profile is not claimed, you can update the visibility
                        if (profileEntity.getClaimed() == null || !profileEntity.getClaimed()) {
                            // Update the visibility of existing elements if the profile is not claimed
                            String existingVisibilityValue = existingEntity.getVisibility() == null ? null : existingEntity.getVisibility().value();
                            String listVisibilityValue = otherNames.getVisibility() == null ? null : otherNames.getVisibility().value();
                            if (listVisibilityValue != null && !Objects.equals(existingVisibilityValue, listVisibilityValue)) {
                                existingEntity.setVisibility(org.orcid.jaxb.model.common_v2.Visibility.fromValue(listVisibilityValue));
                            }
                        }
                        break;
                    }
                }
            }
            if (!exists) {
                if (existingOtherNameEntities == null) {
                    existingOtherNameEntities = new TreeSet<OtherNameEntity>();
                    profileEntity.setOtherNames(existingOtherNameEntities);
                }
                OtherNameEntity newEntity = new OtherNameEntity();
                newEntity.setProfile(profileEntity);
                // Set source
                SourceEntity source = sourceManager.retrieveSourceEntity();
                setSource(source, newEntity);
                newEntity.setDisplayName(newOtherName.getContent());
                newEntity.setVisibility(getDefaultVisibility(profileEntity, otherNames.getVisibility(), OrcidVisibilityDefaults.OTHER_NAMES_DEFAULT));
                newEntity.setDisplayIndex(0L);
                for (OtherNameEntity tempEntity : existingOtherNameEntities) tempEntity.setDisplayIndex(tempEntity.getDisplayIndex() + 1);
                existingOtherNameEntities.add(newEntity);
            }
        }
    }
}

Example 7 with OtherName

use of org.orcid.jaxb.model.message.OtherName in project ORCID-Source by ORCID.

the class OrcidProfileManagerImplTest method testUpdateOrcidBioKeepTheUserVisibility.

@Test
@Transactional
public void testUpdateOrcidBioKeepTheUserVisibility() {
    OrcidProfile profile = createBasicProfile();
    String orcidIdentifier = null;
    profile.setOrcidIdentifier(orcidIdentifier);
    setBio(profile, Visibility.LIMITED);
    OrcidHistory orcidHistory = new OrcidHistory();
    orcidHistory.setClaimed(new Claimed(true));
    orcidHistory.setCreationMethod(CreationMethod.DIRECT);
    orcidHistory.setSubmissionDate(new SubmissionDate(DateUtils.convertToXMLGregorianCalendar(new Date())));
    profile.setOrcidHistory(orcidHistory);
    Preferences preferences = new Preferences();
    preferences.setSendChangeNotifications(new SendChangeNotifications(true));
    preferences.setSendOrcidNews(new SendOrcidNews(true));
    // Default visibility for user will be LIMITED
    preferences.setActivitiesVisibilityDefault(new ActivitiesVisibilityDefault(Visibility.LIMITED));
    preferences.setNotificationsEnabled(DefaultPreferences.NOTIFICATIONS_ENABLED);
    preferences.setSendEmailFrequencyDays(DefaultPreferences.SEND_EMAIL_FREQUENCY_DAYS);
    preferences.setSendMemberUpdateRequests(DefaultPreferences.SEND_MEMBER_UPDATE_REQUESTS);
    OrcidInternal internal = new OrcidInternal();
    internal.setPreferences(preferences);
    profile.setOrcidInternal(internal);
    profile = orcidProfileManager.createOrcidProfile(profile, true, false);
    // Update it setting it to PUBLIC and check
    profile = orcidProfileManager.retrieveOrcidProfile(profile.getOrcidIdentifier().getPath());
    assertNotNull(profile);
    assertNotNull(profile.getOrcidBio());
    OrcidBio bioToUpdate = profile.getOrcidBio();
    assertEquals(Visibility.LIMITED, bioToUpdate.getBiography().getVisibility());
    assertEquals("This is my biography", bioToUpdate.getBiography().getContent());
    assertEquals(Visibility.LIMITED, bioToUpdate.getContactDetails().getAddress().getCountry().getVisibility());
    assertEquals(Iso3166Country.US, bioToUpdate.getContactDetails().getAddress().getCountry().getValue());
    assertEquals(Visibility.LIMITED, bioToUpdate.getExternalIdentifiers().getVisibility());
    assertEquals(1, bioToUpdate.getExternalIdentifiers().getExternalIdentifier().size());
    assertEquals(Visibility.LIMITED, bioToUpdate.getKeywords().getVisibility());
    assertEquals(1, bioToUpdate.getKeywords().getKeyword().size());
    assertEquals(Visibility.LIMITED, bioToUpdate.getPersonalDetails().getOtherNames().getVisibility());
    assertEquals(1, bioToUpdate.getPersonalDetails().getOtherNames().getOtherName().size());
    assertEquals(Visibility.LIMITED, bioToUpdate.getResearcherUrls().getVisibility());
    assertEquals(1, bioToUpdate.getResearcherUrls().getResearcherUrl().size());
    // Update bio
    bioToUpdate.getBiography().setContent("Updated biography");
    bioToUpdate.getBiography().setVisibility(Visibility.PRIVATE);
    // Update address
    bioToUpdate.getContactDetails().getAddress().getCountry().setValue(Iso3166Country.CR);
    bioToUpdate.getContactDetails().getAddress().getCountry().setVisibility(Visibility.PRIVATE);
    // Update external identifiers
    ExternalIdentifier extId = new ExternalIdentifier();
    extId.setExternalIdCommonName(new ExternalIdCommonName("common-name-2"));
    extId.setExternalIdReference(new ExternalIdReference("ext-id-reference-2"));
    extId.setExternalIdUrl(new ExternalIdUrl("http://orcid.org/ext-id/2"));
    extId.setVisibility(Visibility.PRIVATE);
    bioToUpdate.getExternalIdentifiers().setVisibility(Visibility.PRIVATE);
    bioToUpdate.getExternalIdentifiers().getExternalIdentifier().add(extId);
    // Update keywords
    Keyword k = new Keyword();
    k.setContent("keyword-2");
    k.setVisibility(Visibility.PRIVATE);
    bioToUpdate.getKeywords().getKeyword().add(k);
    bioToUpdate.getKeywords().setVisibility(Visibility.PRIVATE);
    // Update researcher urls
    ResearcherUrl rUrl = new ResearcherUrl();
    rUrl.setUrl(new Url("http://orcid.org/researcher-url-2"));
    rUrl.setUrlName(new UrlName("url-name-2"));
    rUrl.setVisibility(Visibility.PRIVATE);
    bioToUpdate.getResearcherUrls().getResearcherUrl().add(rUrl);
    bioToUpdate.getResearcherUrls().setVisibility(Visibility.PRIVATE);
    // Update other names
    OtherName o = new OtherName();
    o.setContent("other-name-2");
    o.setVisibility(Visibility.PRIVATE);
    bioToUpdate.getPersonalDetails().getOtherNames().getOtherName().add(o);
    bioToUpdate.getPersonalDetails().getOtherNames().setVisibility(Visibility.PRIVATE);
    // Update the biography
    orcidProfileManager.updateOrcidBio(profile);
    // Get the record again and check that visibilities where not updated
    OrcidProfile updatedProfile = orcidProfileManager.retrieveOrcidProfile(profile.getOrcidIdentifier().getPath());
    assertNotNull(updatedProfile);
    assertNotNull(updatedProfile.getOrcidBio());
    OrcidBio updatedBio = updatedProfile.getOrcidBio();
    assertEquals(Visibility.LIMITED, updatedBio.getBiography().getVisibility());
    assertEquals("Updated biography", updatedBio.getBiography().getContent());
    assertEquals(Visibility.LIMITED, updatedBio.getContactDetails().getAddress().getCountry().getVisibility());
    assertEquals(Iso3166Country.US, updatedBio.getContactDetails().getAddress().getCountry().getValue());
    assertEquals(Visibility.LIMITED, updatedBio.getExternalIdentifiers().getVisibility());
    assertEquals(2, updatedBio.getExternalIdentifiers().getExternalIdentifier().size());
    assertEquals(Visibility.LIMITED, updatedBio.getKeywords().getVisibility());
    assertEquals(2, updatedBio.getKeywords().getKeyword().size());
    assertEquals(Visibility.LIMITED, updatedBio.getPersonalDetails().getOtherNames().getVisibility());
    assertEquals(2, updatedBio.getPersonalDetails().getOtherNames().getOtherName().size());
    assertEquals(Visibility.LIMITED, updatedBio.getResearcherUrls().getVisibility());
    assertEquals(2, updatedBio.getResearcherUrls().getResearcherUrl().size());
}

Example 8 with OtherName

use of org.orcid.jaxb.model.message.OtherName in project ORCID-Source by ORCID.

the class OrcidProfileManagerImpl method deactivateOrcidProfile.

@Override
@Transactional
@Deprecated
public OrcidProfile deactivateOrcidProfile(OrcidProfile existingOrcidProfile) {
    OrcidProfile blankedOrcidProfile = new OrcidProfile();
    OrcidBio existingBio = existingOrcidProfile.getOrcidBio();
    OrcidBio minimalBio = new OrcidBio();
    ContactDetails minimalContactDetails = new ContactDetails();
    minimalContactDetails.getEmail().addAll(existingBio.getContactDetails().getEmail());
    OrcidInternal minimalOrcidInternal = new OrcidInternal();
    minimalOrcidInternal.setSecurityDetails(existingOrcidProfile.getOrcidInternal().getSecurityDetails());
    OrcidHistory deactivatedOrcidHistory = existingOrcidProfile.getOrcidHistory();
    deactivatedOrcidHistory.setDeactivationDate(new DeactivationDate(DateUtils.convertToXMLGregorianCalendar(new Date())));
    blankedOrcidProfile.setOrcidHistory(deactivatedOrcidHistory);
    // only names names from bio with a visibility setting
    PersonalDetails minimalPersonalDetails = new PersonalDetails();
    minimalPersonalDetails.setOtherNames(null);
    CreditName creditName = new CreditName();
    creditName.setVisibility(Visibility.PUBLIC);
    minimalPersonalDetails.setCreditName(creditName);
    minimalPersonalDetails.setGivenNames(new GivenNames("Given Names Deactivated"));
    minimalPersonalDetails.setFamilyName(new FamilyName("Family Name Deactivated"));
    for (Email email : minimalContactDetails.getEmail()) {
        setVisibilityToPrivate(email);
    }
    setVisibilityToPrivate(minimalPersonalDetails.getOtherNames());
    if (minimalPersonalDetails.getOtherNames() != null && minimalPersonalDetails.getOtherNames().getOtherName() != null) {
        for (OtherName name : minimalPersonalDetails.getOtherNames().getOtherName()) setVisibilityToPrivate(name);
    }
    minimalBio.setPersonalDetails(minimalPersonalDetails);
    minimalBio.setContactDetails(minimalContactDetails);
    minimalBio.setBiography(new Biography());
    minimalBio.setExternalIdentifiers(new ExternalIdentifiers());
    blankedOrcidProfile.setOrcidBio(minimalBio);
    blankedOrcidProfile.setOrcidIdentifier(existingOrcidProfile.getOrcidIdentifier().getPath());
    OrcidProfile profileToReturn = updateOrcidProfile(blankedOrcidProfile);
    userConnectionDao.deleteByOrcid(existingOrcidProfile.getOrcidIdentifier().getPath());
    notificationManager.sendAmendEmail(profileToReturn, AmendedSection.UNKNOWN);
    return profileToReturn;
}

Example 9 with OtherName

use of org.orcid.jaxb.model.message.OtherName in project ORCID-Source by ORCID.

the class OrcidProfileManagerImpl method addDefaultVisibilityToBioItems.

private void addDefaultVisibilityToBioItems(OrcidProfile orcidProfile, Visibility defaultActivityVis, Boolean isClaimed) {
    if (defaultActivityVis == null) {
        defaultActivityVis = Visibility.PRIVATE;
    }
    if (isClaimed == null) {
        isClaimed = false;
    }
    if (orcidProfile.getOrcidBio() != null) {
        if (orcidProfile.getOrcidBio().getBiography() != null) {
            if (isClaimed) {
                orcidProfile.getOrcidBio().getBiography().setVisibility(defaultActivityVis);
            } else {
                Visibility visibility = orcidProfile.getOrcidBio().getBiography().getVisibility();
                orcidProfile.getOrcidBio().getBiography().setVisibility(visibility != null ? visibility : Visibility.PRIVATE);
            }
        }
        if (orcidProfile.getOrcidBio().getExternalIdentifiers() != null) {
            Visibility listVisibility = orcidProfile.getOrcidBio().getExternalIdentifiers().getVisibility();
            for (ExternalIdentifier x : orcidProfile.getOrcidBio().getExternalIdentifiers().getExternalIdentifier()) {
                if (isClaimed) {
                    x.setVisibility(defaultActivityVis);
                } else {
                    x.setVisibility(listVisibility != null ? listVisibility : Visibility.PRIVATE);
                }
            }
        }
        if (orcidProfile.getOrcidBio().getKeywords() != null) {
            Visibility listVisibility = orcidProfile.getOrcidBio().getKeywords().getVisibility();
            for (Keyword x : orcidProfile.getOrcidBio().getKeywords().getKeyword()) {
                if (isClaimed) {
                    x.setVisibility(defaultActivityVis);
                } else {
                    x.setVisibility(listVisibility != null ? listVisibility : Visibility.PRIVATE);
                }
            }
        }
        if (orcidProfile.getOrcidBio().getResearcherUrls() != null) {
            Visibility listVisibility = orcidProfile.getOrcidBio().getResearcherUrls().getVisibility();
            for (ResearcherUrl x : orcidProfile.getOrcidBio().getResearcherUrls().getResearcherUrl()) {
                if (isClaimed) {
                    x.setVisibility(defaultActivityVis);
                } else {
                    x.setVisibility(listVisibility != null ? listVisibility : Visibility.PRIVATE);
                }
            }
        }
        if (orcidProfile.getOrcidBio().getPersonalDetails() != null && orcidProfile.getOrcidBio().getPersonalDetails().getOtherNames() != null) {
            Visibility listVisibility = orcidProfile.getOrcidBio().getPersonalDetails().getOtherNames().getVisibility();
            for (OtherName x : orcidProfile.getOrcidBio().getPersonalDetails().getOtherNames().getOtherName()) {
                if (isClaimed) {
                    x.setVisibility(defaultActivityVis);
                } else {
                    x.setVisibility(listVisibility != null ? listVisibility : Visibility.PRIVATE);
                }
            }
        }
        if (orcidProfile.getOrcidBio().getContactDetails() != null && orcidProfile.getOrcidBio().getContactDetails().getAddress() != null && orcidProfile.getOrcidBio().getContactDetails().getAddress().getCountry() != null) {
            Country country = orcidProfile.getOrcidBio().getContactDetails().getAddress().getCountry();
            if (isClaimed) {
                country.setVisibility(defaultActivityVis);
            } else {
                country.setVisibility(country.getVisibility() != null ? country.getVisibility() : Visibility.PRIVATE);
            }
        }
    }
}

Example 10 with OtherName

use of org.orcid.jaxb.model.message.OtherName in project ORCID-Source by ORCID.

the class OrcidMessageUtil method setSourceName.

public void setSourceName(OrcidProfile orcidProfile) {
    if (orcidProfile != null) {
        if (orcidProfile.getOrcidActivities() != null) {
            OrcidActivities orcidActivities = orcidProfile.getOrcidActivities();
            if (orcidActivities.getAffiliations() != null) {
                Affiliations affs = orcidActivities.getAffiliations();
                List<Affiliation> affList = affs.getAffiliation();
                if (affList != null) {
                    for (Affiliation aff : affList) {
                        setSourceName(aff);
                    }
                }
            }
            if (orcidActivities.getFundings() != null) {
                FundingList fundingList = orcidActivities.getFundings();
                List<Funding> fundings = fundingList.getFundings();
                if (fundings != null) {
                    for (Funding funding : fundings) {
                        setSourceName(funding);
                    }
                }
            }
            if (orcidActivities.getOrcidWorks() != null) {
                OrcidWorks orcidWorks = orcidActivities.getOrcidWorks();
                List<OrcidWork> works = orcidWorks.getOrcidWork();
                if (works != null) {
                    for (OrcidWork work : works) {
                        setSourceName(work);
                    }
                }
            }
        }
        if (orcidProfile.getOrcidBio() != null) {
            OrcidBio orcidBio = orcidProfile.getOrcidBio();
            if (orcidBio.getContactDetails() != null) {
                Address address = orcidBio.getContactDetails().getAddress();
                if (address != null) {
                    setSourceName(address);
                }
            }
            if (orcidBio.getExternalIdentifiers() != null) {
                ExternalIdentifiers extIds = orcidBio.getExternalIdentifiers();
                List<ExternalIdentifier> extIdsList = extIds.getExternalIdentifier();
                if (extIdsList != null) {
                    for (ExternalIdentifier extId : extIdsList) {
                        setSourceName(extId);
                    }
                }
            }
            if (orcidBio.getKeywords() != null) {
                Keywords keywords = orcidBio.getKeywords();
                List<Keyword> keywordList = keywords.getKeyword();
                if (keywordList != null) {
                    for (Keyword keyword : keywordList) {
                        setSourceName(keyword);
                    }
                }
            }
            if (orcidBio.getPersonalDetails() != null) {
                OtherNames otherNames = orcidBio.getPersonalDetails().getOtherNames();
                if (otherNames != null) {
                    List<OtherName> otherNameList = otherNames.getOtherName();
                    if (otherNameList != null) {
                        for (OtherName otherName : otherNameList) {
                            setSourceName(otherName);
                        }
                    }
                }
            }
            if (orcidBio.getResearcherUrls() != null) {
                ResearcherUrls rUrls = orcidBio.getResearcherUrls();
                List<ResearcherUrl> rUrlList = rUrls.getResearcherUrl();
                if (rUrlList != null) {
                    for (ResearcherUrl rUrl : rUrlList) {
                        setSourceName(rUrl);
                    }
                }
            }
        }
    }
}