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Example 11 with WorkExternalIdentifier

use of org.orcid.jaxb.model.message.WorkExternalIdentifier in project ORCID-Source by ORCID.

the class OrcidIndexManagerImplTest method getStandardOrcidWithDoiInformation.

private OrcidProfile getStandardOrcidWithDoiInformation() {
    OrcidProfile orcidProfile = getStandardOrcid();
    OrcidWork orcidWork1 = orcidProfile.retrieveOrcidWorks().getOrcidWork().get(0);
    OrcidWork orcidWork2 = orcidProfile.retrieveOrcidWorks().getOrcidWork().get(1);
    OrcidWork orcidWork3 = orcidProfile.retrieveOrcidWorks().getOrcidWork().get(2);
    WorkExternalIdentifiers work1ExternalIdentifiers = new WorkExternalIdentifiers();
    WorkExternalIdentifier work1ExternalIdentifier1 = new WorkExternalIdentifier();
    work1ExternalIdentifier1.setWorkExternalIdentifierType(WorkExternalIdentifierType.DOI);
    work1ExternalIdentifier1.setWorkExternalIdentifierId(new WorkExternalIdentifierId("work1-doi1"));
    WorkExternalIdentifier work1ExternalIdentifier2 = new WorkExternalIdentifier();
    work1ExternalIdentifier2.setWorkExternalIdentifierType(WorkExternalIdentifierType.PMID);
    work1ExternalIdentifier2.setWorkExternalIdentifierId(new WorkExternalIdentifierId("work1-pmid"));
    work1ExternalIdentifiers.getWorkExternalIdentifier().add(work1ExternalIdentifier1);
    work1ExternalIdentifiers.getWorkExternalIdentifier().add(work1ExternalIdentifier2);
    orcidWork1.setWorkExternalIdentifiers(work1ExternalIdentifiers);
    WorkExternalIdentifiers work2ExternalIdentifiers = new WorkExternalIdentifiers();
    WorkExternalIdentifier work2ExternalIdentifier1 = new WorkExternalIdentifier();
    work2ExternalIdentifier1.setWorkExternalIdentifierType(WorkExternalIdentifierType.DOI);
    work2ExternalIdentifier1.setWorkExternalIdentifierId(new WorkExternalIdentifierId("work2-doi1"));
    WorkExternalIdentifier work2ExternalIdentifier2 = new WorkExternalIdentifier();
    work2ExternalIdentifier2.setWorkExternalIdentifierType(WorkExternalIdentifierType.DOI);
    work2ExternalIdentifier2.setWorkExternalIdentifierId(new WorkExternalIdentifierId("work2-doi2"));
    work2ExternalIdentifiers.getWorkExternalIdentifier().add(work2ExternalIdentifier1);
    work2ExternalIdentifiers.getWorkExternalIdentifier().add(work2ExternalIdentifier2);
    orcidWork2.setWorkExternalIdentifiers(work2ExternalIdentifiers);
    WorkExternalIdentifiers work3ExternalIdentifiers = new WorkExternalIdentifiers();
    WorkExternalIdentifier work3ExternalIdentifier1 = new WorkExternalIdentifier();
    work3ExternalIdentifier1.setWorkExternalIdentifierType(WorkExternalIdentifierType.DOI);
    work3ExternalIdentifier1.setWorkExternalIdentifierId(new WorkExternalIdentifierId("work3-doi1"));
    WorkExternalIdentifier work3ExternalIdentifier2 = new WorkExternalIdentifier();
    work3ExternalIdentifier2.setWorkExternalIdentifierType(WorkExternalIdentifierType.DOI);
    work3ExternalIdentifier2.setWorkExternalIdentifierId(new WorkExternalIdentifierId("work3-doi2"));
    work3ExternalIdentifiers.getWorkExternalIdentifier().add(work3ExternalIdentifier1);
    work3ExternalIdentifiers.getWorkExternalIdentifier().add(work3ExternalIdentifier2);
    orcidWork3.setWorkExternalIdentifiers(work3ExternalIdentifiers);
    return orcidProfile;
}
Also used : OrcidProfile(org.orcid.jaxb.model.message.OrcidProfile) WorkExternalIdentifiers(org.orcid.jaxb.model.message.WorkExternalIdentifiers) OrcidWork(org.orcid.jaxb.model.message.OrcidWork) WorkExternalIdentifierId(org.orcid.jaxb.model.message.WorkExternalIdentifierId) WorkExternalIdentifier(org.orcid.jaxb.model.message.WorkExternalIdentifier)

Example 12 with WorkExternalIdentifier

use of org.orcid.jaxb.model.message.WorkExternalIdentifier in project ORCID-Source by ORCID.

the class OrcidProfileToSolrDocument method convert.

@Deprecated
public OrcidSolrDocument convert(OrcidProfile profile) {
    // Check if the profile is locked
    if (profile.isLocked()) {
        profile.downgradeToOrcidIdentifierOnly();
    }
    OrcidSolrDocument profileIndexDocument = new OrcidSolrDocument();
    profileIndexDocument.setOrcid(profile.getOrcidIdentifier().getPath());
    OrcidDeprecated orcidDeprecated = profile.getOrcidDeprecated();
    if (orcidDeprecated != null) {
        profileIndexDocument.setPrimaryRecord(orcidDeprecated.getPrimaryRecord() != null ? orcidDeprecated.getPrimaryRecord().getOrcidIdentifier().getPath() : null);
    }
    OrcidBio orcidBio = profile.getOrcidBio();
    if (orcidBio != null) {
        PersonalDetails personalDetails = orcidBio.getPersonalDetails();
        boolean persistPersonalDetails = personalDetails != null;
        if (persistPersonalDetails) {
            profileIndexDocument.setFamilyName(personalDetails.getFamilyName() != null ? personalDetails.getFamilyName().getContent() : null);
            profileIndexDocument.setGivenNames(personalDetails.getGivenNames() != null ? personalDetails.getGivenNames().getContent() : null);
            profileIndexDocument.setCreditName(personalDetails.getCreditName() != null ? personalDetails.getCreditName().getContent() : null);
            List<OtherName> otherNames = personalDetails.getOtherNames() != null ? personalDetails.getOtherNames().getOtherName() : null;
            if (otherNames != null && !otherNames.isEmpty()) {
                List<String> names = new ArrayList<String>();
                for (OtherName otherName : otherNames) {
                    names.add(otherName.getContent());
                }
                profileIndexDocument.setOtherNames(names);
            }
        }
        ContactDetails contactDetails = orcidBio.getContactDetails();
        if (contactDetails != null) {
            for (Email email : contactDetails.getEmail()) {
                profileIndexDocument.addEmailAddress(email.getValue());
            }
        }
        ExternalIdentifiers externalIdentifiers = orcidBio.getExternalIdentifiers();
        if (externalIdentifiers != null) {
            List<String> extIdOrcids = new ArrayList<String>();
            List<String> extIdRefs = new ArrayList<String>();
            List<String> extIdOrcidsAndRefs = new ArrayList<String>();
            for (ExternalIdentifier externalIdentifier : externalIdentifiers.getExternalIdentifier()) {
                Source source = externalIdentifier.getSource();
                String sourcePath = null;
                if (source != null) {
                    sourcePath = source.retrieveSourcePath();
                    if (sourcePath != null) {
                        extIdOrcids.add(sourcePath);
                    }
                }
                ExternalIdReference externalIdReference = externalIdentifier.getExternalIdReference();
                if (externalIdReference != null) {
                    extIdRefs.add(externalIdReference.getContent());
                }
                if (NullUtils.noneNull(sourcePath, externalIdReference)) {
                    extIdOrcidsAndRefs.add(sourcePath + "=" + externalIdReference.getContent());
                }
            }
            if (!extIdOrcids.isEmpty()) {
                profileIndexDocument.setExternalIdSources(extIdOrcids);
            }
            if (!extIdRefs.isEmpty()) {
                profileIndexDocument.setExternalIdReferences(extIdRefs);
            }
            if (!extIdOrcidsAndRefs.isEmpty()) {
                profileIndexDocument.setExternalIdSourcesAndReferences(extIdOrcidsAndRefs);
            }
        }
        OrcidActivities orcidActivities = profile.getOrcidActivities();
        if (orcidActivities != null) {
            if (orcidBio != null && orcidBio.getKeywords() != null) {
                List<Keyword> keyWords = orcidBio.getKeywords().getKeyword();
                if (keyWords != null && keyWords.size() > 0) {
                    List<String> keywordValues = new ArrayList<String>();
                    for (Keyword keyword : keyWords) {
                        keywordValues.add(keyword.getContent());
                    }
                    profileIndexDocument.setKeywords(keywordValues);
                }
            }
        }
        List<OrcidWork> orcidWorks = profile.retrieveOrcidWorks() != null ? profile.retrieveOrcidWorks().getOrcidWork() : null;
        if (orcidWorks != null) {
            List<String> workTitles = new ArrayList<String>();
            Map<WorkExternalIdentifierType, List<String>> allExternalIdentifiers = new HashMap<WorkExternalIdentifierType, List<String>>();
            for (OrcidWork orcidWork : orcidWorks) {
                if (orcidWork.getWorkExternalIdentifiers() != null) {
                    for (WorkExternalIdentifier workExternalIdentifier : orcidWork.getWorkExternalIdentifiers().getWorkExternalIdentifier()) {
                        /**
                             * Creates a map that contains all different
                             * external identifiers for the current work
                             */
                        boolean nullSafeCheckForWorkExternalIdentifier = workExternalIdentifier.getWorkExternalIdentifierId() != null && !StringUtils.isBlank(workExternalIdentifier.getWorkExternalIdentifierId().getContent());
                        if (nullSafeCheckForWorkExternalIdentifier) {
                            WorkExternalIdentifierType type = workExternalIdentifier.getWorkExternalIdentifierType();
                            if (!allExternalIdentifiers.containsKey(type)) {
                                List<String> content = new ArrayList<String>();
                                content.add(workExternalIdentifier.getWorkExternalIdentifierId().getContent());
                                allExternalIdentifiers.put(type, content);
                            } else {
                                allExternalIdentifiers.get(type).add(workExternalIdentifier.getWorkExternalIdentifierId().getContent());
                            }
                        }
                    }
                }
                if (orcidWork.getWorkTitle() != null) {
                    Title workMainTitle = orcidWork.getWorkTitle().getTitle();
                    Subtitle worksubTitle = orcidWork.getWorkTitle().getSubtitle();
                    TranslatedTitle translatedTitle = orcidWork.getWorkTitle().getTranslatedTitle();
                    if (workMainTitle != null && !StringUtils.isBlank(workMainTitle.getContent())) {
                        workTitles.add(workMainTitle.getContent());
                    }
                    if (worksubTitle != null && !StringUtils.isBlank(worksubTitle.getContent())) {
                        workTitles.add(worksubTitle.getContent());
                    }
                    if (translatedTitle != null && !StringUtils.isBlank(translatedTitle.getContent())) {
                        workTitles.add(translatedTitle.getContent());
                    }
                }
            }
            profileIndexDocument.setWorkTitles(workTitles);
            // Set the list of external identifiers to the document list
            addExternalIdentifiersToIndexDocument(profileIndexDocument, allExternalIdentifiers);
        }
        List<Funding> orcidFundings = profile.retrieveFundings() != null ? profile.retrieveFundings().getFundings() : null;
        if (orcidFundings != null) {
            List<String> fundingTitle = new ArrayList<String>();
            for (Funding orcidFunding : orcidFundings) {
                FundingTitle title = orcidFunding.getTitle();
                if (title != null) {
                    if (title.getTitle() != null && !StringUtils.isBlank(title.getTitle().getContent())) {
                        fundingTitle.add(title.getTitle().getContent());
                    }
                    if (title.getTranslatedTitle() != null && StringUtils.isBlank(title.getTranslatedTitle().getContent())) {
                        fundingTitle.add(title.getTranslatedTitle().getContent());
                    }
                }
            }
            profileIndexDocument.setFundingTitles(fundingTitle);
        }
    }
    OrcidMessage orcidMessage = new OrcidMessage();
    orcidMessage.setMessageVersion(OrcidMessage.DEFAULT_VERSION);
    orcidMessage.setOrcidProfile(profile);
    OrcidHistory orcidHistory = profile.getOrcidHistory();
    if (orcidHistory != null) {
        LastModifiedDate lastModifiedDate = orcidHistory.getLastModifiedDate();
        if (lastModifiedDate != null) {
            profileIndexDocument.setProfileLastModifiedDate(lastModifiedDate.getValue().toGregorianCalendar().getTime());
        }
        SubmissionDate submissionDate = orcidHistory.getSubmissionDate();
        if (submissionDate != null) {
            profileIndexDocument.setProfileSubmissionDate(submissionDate.getValue().toGregorianCalendar().getTime());
        }
    }
    return profileIndexDocument;
}
Also used : LastModifiedDate(org.orcid.jaxb.model.message.LastModifiedDate) Email(org.orcid.jaxb.model.message.Email) OrcidBio(org.orcid.jaxb.model.message.OrcidBio) HashMap(java.util.HashMap) Funding(org.orcid.jaxb.model.message.Funding) ArrayList(java.util.ArrayList) OrcidWork(org.orcid.jaxb.model.message.OrcidWork) SubmissionDate(org.orcid.jaxb.model.message.SubmissionDate) Source(org.orcid.jaxb.model.message.Source) ContactDetails(org.orcid.jaxb.model.message.ContactDetails) OrcidSolrDocument(org.orcid.utils.solr.entities.OrcidSolrDocument) OrcidMessage(org.orcid.jaxb.model.message.OrcidMessage) ArrayList(java.util.ArrayList) List(java.util.List) ExternalIdentifiers(org.orcid.jaxb.model.message.ExternalIdentifiers) WorkExternalIdentifierType(org.orcid.jaxb.model.message.WorkExternalIdentifierType) ExternalIdReference(org.orcid.jaxb.model.message.ExternalIdReference) Keyword(org.orcid.jaxb.model.message.Keyword) WorkExternalIdentifier(org.orcid.jaxb.model.message.WorkExternalIdentifier) ExternalIdentifier(org.orcid.jaxb.model.message.ExternalIdentifier) OtherName(org.orcid.jaxb.model.message.OtherName) Title(org.orcid.jaxb.model.message.Title) FundingTitle(org.orcid.jaxb.model.message.FundingTitle) TranslatedTitle(org.orcid.jaxb.model.message.TranslatedTitle) PersonalDetails(org.orcid.jaxb.model.message.PersonalDetails) OrcidActivities(org.orcid.jaxb.model.message.OrcidActivities) Subtitle(org.orcid.jaxb.model.message.Subtitle) OrcidDeprecated(org.orcid.jaxb.model.message.OrcidDeprecated) TranslatedTitle(org.orcid.jaxb.model.message.TranslatedTitle) OrcidHistory(org.orcid.jaxb.model.message.OrcidHistory) WorkExternalIdentifier(org.orcid.jaxb.model.message.WorkExternalIdentifier) FundingTitle(org.orcid.jaxb.model.message.FundingTitle) OrcidDeprecated(org.orcid.jaxb.model.message.OrcidDeprecated)

Example 13 with WorkExternalIdentifier

use of org.orcid.jaxb.model.message.WorkExternalIdentifier in project ORCID-Source by ORCID.

the class Publication method getOrcidWork.

public OrcidWork getOrcidWork() {
    initCrossRefContext();
    OrcidWork orcidWork = new OrcidWork();
    if (StringUtils.isNotBlank(doi)) {
        WorkExternalIdentifier doiExtId = new WorkExternalIdentifier();
        doiExtId.setWorkExternalIdentifierType(WorkExternalIdentifierType.DOI);
        doiExtId.setWorkExternalIdentifierId(new WorkExternalIdentifierId(doi));
        WorkExternalIdentifiers workExtIds = new WorkExternalIdentifiers();
        orcidWork.setWorkExternalIdentifiers(workExtIds);
        workExtIds.getWorkExternalIdentifier().add(doiExtId);
    }
    if (StringUtils.isNotBlank(title)) {
        WorkTitle workTitle = new WorkTitle();
        orcidWork.setWorkTitle(workTitle);
        workTitle.setTitle(new Title(title));
    }
    // Will throw an IllegalArgumentException if not valid
    CitationType cType = CitationType.fromValue(citationType);
    Citation citation = new Citation(fullCitation, cType);
    orcidWork.setWorkCitation(citation);
    String publicationDateString = crossRefContext.getDate();
    if (StringUtils.isNotBlank(publicationDateString)) {
        XMLGregorianCalendar publicationDateGregCal = DateUtils.convertToXMLGregorianCalendar(publicationDateString);
        if (publicationDateGregCal != null) {
            Year publicationyear = new Year(publicationDateGregCal.getYear());
            Month publicationMonth = publicationDateGregCal.getMonth() == DatatypeConstants.FIELD_UNDEFINED ? null : new Month(publicationDateGregCal.getMonth());
            Day publicationDay = publicationDateGregCal.getDay() == DatatypeConstants.FIELD_UNDEFINED ? null : new Day(publicationDateGregCal.getDay());
            orcidWork.setPublicationDate(new PublicationDate(publicationyear, publicationMonth, publicationDay));
        }
    }
    String author = crossRefContext.getAuthor();
    if (StringUtils.isNotBlank(author)) {
        WorkContributors workContributors = new WorkContributors();
        orcidWork.setWorkContributors(workContributors);
        Contributor contributor = new Contributor();
        workContributors.getContributor().add(contributor);
        contributor.setCreditName(new CreditName(author));
        ContributorAttributes contributorAttributes = new ContributorAttributes();
        contributor.setContributorAttributes(contributorAttributes);
        contributorAttributes.setContributorRole(ContributorRole.AUTHOR);
        contributorAttributes.setContributorSequence(SequenceType.FIRST);
    }
    return orcidWork;
}
Also used : PublicationDate(org.orcid.jaxb.model.message.PublicationDate) ContributorAttributes(org.orcid.jaxb.model.message.ContributorAttributes) WorkContributors(org.orcid.jaxb.model.message.WorkContributors) OrcidWork(org.orcid.jaxb.model.message.OrcidWork) WorkExternalIdentifierId(org.orcid.jaxb.model.message.WorkExternalIdentifierId) CreditName(org.orcid.jaxb.model.message.CreditName) Title(org.orcid.jaxb.model.message.Title) WorkTitle(org.orcid.jaxb.model.message.WorkTitle) Contributor(org.orcid.jaxb.model.message.Contributor) XMLGregorianCalendar(javax.xml.datatype.XMLGregorianCalendar) Month(org.orcid.jaxb.model.message.Month) WorkExternalIdentifiers(org.orcid.jaxb.model.message.WorkExternalIdentifiers) Year(org.orcid.jaxb.model.message.Year) WorkTitle(org.orcid.jaxb.model.message.WorkTitle) CitationType(org.orcid.jaxb.model.message.CitationType) WorkExternalIdentifier(org.orcid.jaxb.model.message.WorkExternalIdentifier) Citation(org.orcid.jaxb.model.message.Citation) Day(org.orcid.jaxb.model.message.Day)

Example 14 with WorkExternalIdentifier

use of org.orcid.jaxb.model.message.WorkExternalIdentifier in project ORCID-Source by ORCID.

the class OrcidIndexManagerImpl method persistProfileInformationForIndexing.

@Override
@Deprecated
public void persistProfileInformationForIndexing(OrcidProfile orcidProfile) {
    // Check if the profile is locked
    if (orcidProfile.isLocked()) {
        orcidProfile.downgradeToOrcidIdentifierOnly();
    }
    OrcidMessage messageToFilter = new OrcidMessage();
    messageToFilter.setOrcidProfile(orcidProfile);
    OrcidMessage filteredMessage = visibilityFilter.filter(messageToFilter, Visibility.PUBLIC);
    OrcidProfile filteredProfile = filteredMessage.getOrcidProfile();
    OrcidSolrDocument profileIndexDocument = new OrcidSolrDocument();
    profileIndexDocument.setOrcid(filteredProfile.getOrcidIdentifier().getPath());
    OrcidDeprecated orcidDeprecated = filteredProfile.getOrcidDeprecated();
    if (orcidDeprecated != null) {
        profileIndexDocument.setPrimaryRecord(orcidDeprecated.getPrimaryRecord() != null ? orcidDeprecated.getPrimaryRecord().getOrcidIdentifier().getPath() : null);
    }
    OrcidBio orcidBio = filteredProfile.getOrcidBio();
    if (orcidBio != null) {
        PersonalDetails personalDetails = orcidBio.getPersonalDetails();
        boolean persistPersonalDetails = personalDetails != null;
        if (persistPersonalDetails) {
            profileIndexDocument.setFamilyName(personalDetails.getFamilyName() != null ? personalDetails.getFamilyName().getContent() : null);
            profileIndexDocument.setGivenNames(personalDetails.getGivenNames() != null ? personalDetails.getGivenNames().getContent() : null);
            profileIndexDocument.setCreditName(personalDetails.getCreditName() != null ? personalDetails.getCreditName().getContent() : null);
            List<OtherName> otherNames = personalDetails.getOtherNames() != null ? personalDetails.getOtherNames().getOtherName() : null;
            if (otherNames != null && !otherNames.isEmpty()) {
                List<String> names = new ArrayList<String>();
                for (OtherName otherName : otherNames) {
                    names.add(otherName.getContent());
                }
                profileIndexDocument.setOtherNames(names);
            }
        }
        ContactDetails contactDetails = orcidBio.getContactDetails();
        if (contactDetails != null) {
            for (Email email : contactDetails.getEmail()) {
                profileIndexDocument.addEmailAddress(email.getValue());
            }
        }
        ExternalIdentifiers externalIdentifiers = orcidBio.getExternalIdentifiers();
        if (externalIdentifiers != null) {
            List<String> extIdOrcids = new ArrayList<String>();
            List<String> extIdRefs = new ArrayList<String>();
            List<String> extIdOrcidsAndRefs = new ArrayList<String>();
            for (ExternalIdentifier externalIdentifier : externalIdentifiers.getExternalIdentifier()) {
                Source source = externalIdentifier.getSource();
                String sourcePath = null;
                if (source != null) {
                    sourcePath = source.retrieveSourcePath();
                    if (sourcePath != null) {
                        extIdOrcids.add(sourcePath);
                    }
                }
                ExternalIdReference externalIdReference = externalIdentifier.getExternalIdReference();
                if (externalIdReference != null) {
                    extIdRefs.add(externalIdReference.getContent());
                }
                if (NullUtils.noneNull(sourcePath, externalIdReference)) {
                    extIdOrcidsAndRefs.add(sourcePath + "=" + externalIdReference.getContent());
                }
            }
            if (!extIdOrcids.isEmpty()) {
                profileIndexDocument.setExternalIdSources(extIdOrcids);
            }
            if (!extIdRefs.isEmpty()) {
                profileIndexDocument.setExternalIdReferences(extIdRefs);
            }
            if (!extIdOrcidsAndRefs.isEmpty()) {
                profileIndexDocument.setExternalIdSourcesAndReferences(extIdOrcidsAndRefs);
            }
        }
        OrcidActivities orcidActivities = filteredProfile.getOrcidActivities();
        if (orcidActivities != null) {
            // Affiliations affiliations =
            // orcidActivities.getAffiliations();
            // if (affiliations != null) {
            // List<Affiliation> pastInsts = affiliations
            // .getAffiliationsByType(AffiliationType.PAST_INSTITUTION);
            // if (pastInsts != null && !pastInsts.isEmpty()) {
            // List<String> pastInstNames = new ArrayList<String>();
            // for (Affiliation pastAffiliation : pastInsts) {
            // pastInstNames.add(pastAffiliation
            // .getAffiliationName());
            // }
            //
            // profileIndexDocument
            // .setAffiliatePastInstitutionNames(pastInstNames);
            // }
            //
            // List<Affiliation> primaryInsts = affiliations
            // .getAffiliationsByType(AffiliationType.CURRENT_PRIMARY_INSTITUTION);
            // if (primaryInsts != null && !primaryInsts.isEmpty()) {
            // List<String> primaryInstNames = new ArrayList<String>();
            // for (Affiliation primaryAffiliation : primaryInsts) {
            // primaryInstNames.add(primaryAffiliation
            // .getAffiliationName());
            // }
            //
            // profileIndexDocument
            // .setAffiliatePrimaryInstitutionNames(primaryInstNames);
            // }
            //
            // List<Affiliation> currentNonPrimaryInsts = affiliations
            // .getAffiliationsByType(AffiliationType.CURRENT_INSTITUTION);
            // if (currentNonPrimaryInsts != null
            // && !currentNonPrimaryInsts.isEmpty()) {
            // List<String> affiliateInstNames = new ArrayList<String>();
            // for (Affiliation currentAffiliation : currentNonPrimaryInsts)
            // {
            // affiliateInstNames.add(currentAffiliation
            // .getAffiliationName());
            // }
            //
            // profileIndexDocument
            // .setAffiliateInstitutionNames(affiliateInstNames);
            // }
            // }
            List<String> keywords = extractKeywordsAsStringFromBio(orcidBio);
            if (keywords != null) {
                profileIndexDocument.setKeywords(keywords);
            }
        }
        List<OrcidWork> orcidWorks = filteredProfile.retrieveOrcidWorks() != null ? filteredProfile.retrieveOrcidWorks().getOrcidWork() : null;
        if (orcidWorks != null) {
            List<String> workTitles = new ArrayList<String>();
            Map<WorkExternalIdentifierType, List<String>> allExternalIdentifiers = new HashMap<WorkExternalIdentifierType, List<String>>();
            for (OrcidWork orcidWork : orcidWorks) {
                if (orcidWork.getWorkExternalIdentifiers() != null) {
                    for (WorkExternalIdentifier workExternalIdentifier : orcidWork.getWorkExternalIdentifiers().getWorkExternalIdentifier()) {
                        /**
                             * Creates a map that contains all different
                             * external identifiers for the current work
                             * */
                        if (nullSafeCheckForWorkExternalIdentifier(workExternalIdentifier)) {
                            WorkExternalIdentifierType type = workExternalIdentifier.getWorkExternalIdentifierType();
                            if (!allExternalIdentifiers.containsKey(type)) {
                                List<String> content = new ArrayList<String>();
                                content.add(workExternalIdentifier.getWorkExternalIdentifierId().getContent());
                                allExternalIdentifiers.put(type, content);
                            } else {
                                allExternalIdentifiers.get(type).add(workExternalIdentifier.getWorkExternalIdentifierId().getContent());
                            }
                        }
                    }
                }
                if (orcidWork.getWorkTitle() != null) {
                    Title workMainTitle = orcidWork.getWorkTitle().getTitle();
                    Subtitle worksubTitle = orcidWork.getWorkTitle().getSubtitle();
                    TranslatedTitle translatedTitle = orcidWork.getWorkTitle().getTranslatedTitle();
                    if (workMainTitle != null && !StringUtils.isBlank(workMainTitle.getContent())) {
                        workTitles.add(workMainTitle.getContent());
                    }
                    if (worksubTitle != null && !StringUtils.isBlank(worksubTitle.getContent())) {
                        workTitles.add(worksubTitle.getContent());
                    }
                    if (translatedTitle != null && !StringUtils.isBlank(translatedTitle.getContent())) {
                        workTitles.add(translatedTitle.getContent());
                    }
                }
            }
            profileIndexDocument.setWorkTitles(workTitles);
            // Set the list of external identifiers to the document list
            addExternalIdentifiersToIndexDocument(profileIndexDocument, allExternalIdentifiers);
        }
        List<Funding> orcidFundings = filteredProfile.retrieveFundings() != null ? filteredProfile.retrieveFundings().getFundings() : null;
        if (orcidFundings != null) {
            List<String> fundingTitle = new ArrayList<String>();
            for (Funding orcidFunding : orcidFundings) {
                FundingTitle title = orcidFunding.getTitle();
                if (title != null) {
                    if (title.getTitle() != null && !StringUtils.isBlank(title.getTitle().getContent())) {
                        fundingTitle.add(title.getTitle().getContent());
                    }
                    if (title.getTranslatedTitle() != null && StringUtils.isBlank(title.getTranslatedTitle().getContent())) {
                        fundingTitle.add(title.getTranslatedTitle().getContent());
                    }
                }
            }
            profileIndexDocument.setFundingTitles(fundingTitle);
        }
    }
    OrcidMessage orcidMessage = new OrcidMessage();
    orcidMessage.setMessageVersion(OrcidMessage.DEFAULT_VERSION);
    orcidMessage.setOrcidProfile(filteredProfile);
    OrcidHistory orcidHistory = filteredProfile.getOrcidHistory();
    if (orcidHistory != null) {
        LastModifiedDate lastModifiedDate = orcidHistory.getLastModifiedDate();
        if (lastModifiedDate != null) {
            profileIndexDocument.setProfileLastModifiedDate(lastModifiedDate.getValue().toGregorianCalendar().getTime());
        }
        SubmissionDate submissionDate = orcidHistory.getSubmissionDate();
        if (submissionDate != null) {
            profileIndexDocument.setProfileSubmissionDate(submissionDate.getValue().toGregorianCalendar().getTime());
        }
    }
    if (indexPublicProfile) {
        profileIndexDocument.setPublicProfileMessage(orcidMessage.toXmlString());
    }
    solrDao.persist(profileIndexDocument);
}
Also used : LastModifiedDate(org.orcid.jaxb.model.message.LastModifiedDate) Email(org.orcid.jaxb.model.message.Email) OrcidBio(org.orcid.jaxb.model.message.OrcidBio) HashMap(java.util.HashMap) Funding(org.orcid.jaxb.model.message.Funding) ArrayList(java.util.ArrayList) OrcidWork(org.orcid.jaxb.model.message.OrcidWork) SubmissionDate(org.orcid.jaxb.model.message.SubmissionDate) Source(org.orcid.jaxb.model.message.Source) OrcidProfile(org.orcid.jaxb.model.message.OrcidProfile) ContactDetails(org.orcid.jaxb.model.message.ContactDetails) OrcidMessage(org.orcid.jaxb.model.message.OrcidMessage) OrcidSolrDocument(org.orcid.utils.solr.entities.OrcidSolrDocument) ArrayList(java.util.ArrayList) List(java.util.List) ExternalIdentifiers(org.orcid.jaxb.model.message.ExternalIdentifiers) WorkExternalIdentifierType(org.orcid.jaxb.model.message.WorkExternalIdentifierType) ExternalIdReference(org.orcid.jaxb.model.message.ExternalIdReference) WorkExternalIdentifier(org.orcid.jaxb.model.message.WorkExternalIdentifier) ExternalIdentifier(org.orcid.jaxb.model.message.ExternalIdentifier) OtherName(org.orcid.jaxb.model.message.OtherName) Title(org.orcid.jaxb.model.message.Title) FundingTitle(org.orcid.jaxb.model.message.FundingTitle) TranslatedTitle(org.orcid.jaxb.model.message.TranslatedTitle) PersonalDetails(org.orcid.jaxb.model.message.PersonalDetails) OrcidActivities(org.orcid.jaxb.model.message.OrcidActivities) Subtitle(org.orcid.jaxb.model.message.Subtitle) OrcidDeprecated(org.orcid.jaxb.model.message.OrcidDeprecated) TranslatedTitle(org.orcid.jaxb.model.message.TranslatedTitle) OrcidHistory(org.orcid.jaxb.model.message.OrcidHistory) WorkExternalIdentifier(org.orcid.jaxb.model.message.WorkExternalIdentifier) FundingTitle(org.orcid.jaxb.model.message.FundingTitle) OrcidDeprecated(org.orcid.jaxb.model.message.OrcidDeprecated)

Example 15 with WorkExternalIdentifier

use of org.orcid.jaxb.model.message.WorkExternalIdentifier in project ORCID-Source by ORCID.

the class OrcidSearchManagerImplTest method assignWorkIdentifers.

private void assignWorkIdentifers(OrcidWork orcidWork1, OrcidWork orcidWork2) {
    WorkExternalIdentifiers work1ExternalIdentifiers = new WorkExternalIdentifiers();
    WorkExternalIdentifier work1ExternalIdentifier1 = new WorkExternalIdentifier();
    work1ExternalIdentifier1.setWorkExternalIdentifierType(WorkExternalIdentifierType.DOI);
    work1ExternalIdentifier1.setWorkExternalIdentifierId(new WorkExternalIdentifierId("work1-doi1"));
    work1ExternalIdentifiers.getWorkExternalIdentifier().add(work1ExternalIdentifier1);
    orcidWork1.setWorkExternalIdentifiers(work1ExternalIdentifiers);
    WorkExternalIdentifiers work2ExternalIdentifiers = new WorkExternalIdentifiers();
    WorkExternalIdentifier work2ExternalIdentifier1 = new WorkExternalIdentifier();
    work2ExternalIdentifier1.setWorkExternalIdentifierType(WorkExternalIdentifierType.DOI);
    work2ExternalIdentifier1.setWorkExternalIdentifierId(new WorkExternalIdentifierId("work2-doi1"));
    WorkExternalIdentifier work2ExternalIdentifier2 = new WorkExternalIdentifier();
    work2ExternalIdentifier2.setWorkExternalIdentifierType(WorkExternalIdentifierType.DOI);
    work2ExternalIdentifier2.setWorkExternalIdentifierId(new WorkExternalIdentifierId("work2-doi2"));
    work2ExternalIdentifiers.getWorkExternalIdentifier().add(work2ExternalIdentifier1);
    work2ExternalIdentifiers.getWorkExternalIdentifier().add(work2ExternalIdentifier2);
    orcidWork2.setWorkExternalIdentifiers(work2ExternalIdentifiers);
}
Also used : WorkExternalIdentifiers(org.orcid.jaxb.model.message.WorkExternalIdentifiers) WorkExternalIdentifierId(org.orcid.jaxb.model.message.WorkExternalIdentifierId) WorkExternalIdentifier(org.orcid.jaxb.model.message.WorkExternalIdentifier)

Aggregations

WorkExternalIdentifier (org.orcid.jaxb.model.message.WorkExternalIdentifier)22 WorkExternalIdentifierId (org.orcid.jaxb.model.message.WorkExternalIdentifierId)17 WorkExternalIdentifiers (org.orcid.jaxb.model.message.WorkExternalIdentifiers)16 OrcidWork (org.orcid.jaxb.model.message.OrcidWork)15 Title (org.orcid.jaxb.model.message.Title)13 OrcidProfile (org.orcid.jaxb.model.message.OrcidProfile)11 FundingTitle (org.orcid.jaxb.model.message.FundingTitle)10 WorkTitle (org.orcid.jaxb.model.message.WorkTitle)10 OrcidActivities (org.orcid.jaxb.model.message.OrcidActivities)8 Test (org.junit.Test)7 OrcidMessage (org.orcid.jaxb.model.message.OrcidMessage)7 OrcidWorks (org.orcid.jaxb.model.message.OrcidWorks)6 Source (org.orcid.jaxb.model.message.Source)5 Transactional (org.springframework.transaction.annotation.Transactional)5 OrcidIdentifier (org.orcid.jaxb.model.message.OrcidIdentifier)4 DBUnitTest (org.orcid.test.DBUnitTest)4 ArrayList (java.util.ArrayList)3 ContactDetails (org.orcid.jaxb.model.message.ContactDetails)3 Email (org.orcid.jaxb.model.message.Email)3 ExternalIdentifier (org.orcid.jaxb.model.message.ExternalIdentifier)3