Examples with ExternalID org.orcid.jaxb.model.v3.dev1.record.ExternalID used on opensource projects

Example 11 with ExternalID

use of org.orcid.jaxb.model.v3.dev1.record.ExternalID in project ORCID-Source by ORCID.

the class MemberV3ApiServiceDelegator_ServicesTest method testAddServicesDuplicateExternalIDs.

@Test(expected = OrcidDuplicatedActivityException.class)
public void testAddServicesDuplicateExternalIDs() {
    SecurityContextTestUtils.setUpSecurityContext(ORCID, ScopePathType.READ_LIMITED, ScopePathType.ACTIVITIES_UPDATE);
    ExternalID e1 = new ExternalID();
    e1.setRelationship(Relationship.SELF);
    e1.setType("erm");
    e1.setUrl(new Url("https://orcid.org"));
    e1.setValue("err");
    ExternalID e2 = new ExternalID();
    e2.setRelationship(Relationship.SELF);
    e2.setType("err");
    e2.setUrl(new Url("http://bbc.co.uk"));
    e2.setValue("erm");
    ExternalIDs externalIDs = new ExternalIDs();
    externalIDs.getExternalIdentifier().add(e1);
    externalIDs.getExternalIdentifier().add(e2);
    Service service = (Service) Utils.getAffiliation(AffiliationType.SERVICE);
    service.setExternalIDs(externalIDs);
    Response response = serviceDelegator.createService(ORCID, service);
    assertNotNull(response);
    assertEquals(HttpStatus.SC_CREATED, response.getStatus());
    Map<?, ?> map = response.getMetadata();
    assertNotNull(map);
    assertTrue(map.containsKey("Location"));
    List<?> resultWithPutCode = (List<?>) map.get("Location");
    Long putCode = Long.valueOf(String.valueOf(resultWithPutCode.get(0)));
    try {
        Service duplicate = (Service) Utils.getAffiliation(AffiliationType.SERVICE);
        duplicate.setExternalIDs(externalIDs);
        serviceDelegator.createService(ORCID, duplicate);
    } finally {
        serviceDelegator.deleteAffiliation(ORCID, putCode);
    }
}

Example 12 with ExternalID

use of org.orcid.jaxb.model.v3.dev1.record.ExternalID in project ORCID-Source by ORCID.

the class MemberV3ApiServiceDelegator_WorksTest method testUpdateWorkYouAreNotTheSourceOf.

@Test(expected = WrongSourceException.class)
public void testUpdateWorkYouAreNotTheSourceOf() {
    SecurityContextTestUtils.setUpSecurityContext("4444-4444-4444-4443", ScopePathType.READ_LIMITED, ScopePathType.ACTIVITIES_UPDATE);
    Response response = serviceDelegator.viewWork("4444-4444-4444-4443", 2L);
    assertNotNull(response);
    Work work = (Work) response.getEntity();
    assertNotNull(work);
    Utils.verifyLastModified(work.getLastModifiedDate());
    assertEquals(Long.valueOf(2), work.getPutCode());
    assertNotNull(work.getWorkTitle());
    assertNotNull(work.getWorkTitle().getTitle());
    assertEquals("Another day in the life", work.getWorkTitle().getTitle().getContent());
    assertEquals(WorkType.BOOK, work.getWorkType());
    work.setWorkType(WorkType.EDITED_BOOK);
    work.getWorkTitle().getTitle().setContent("Updated work title");
    ExternalIDs extIds = new ExternalIDs();
    ExternalID extId = new ExternalID();
    extId.setRelationship(Relationship.PART_OF);
    extId.setType(WorkExternalIdentifierType.AGR.value());
    extId.setValue("ext-id-" + System.currentTimeMillis());
    extId.setUrl(new Url("http://thisIsANewUrl.com"));
    extIds.getExternalIdentifier().add(extId);
    work.setWorkExternalIdentifiers(extIds);
    serviceDelegator.updateWork("4444-4444-4444-4443", 2L, work);
    fail();
}

Example 13 with ExternalID

use of org.orcid.jaxb.model.v3.dev1.record.ExternalID in project ORCID-Source by ORCID.

the class PeerReviewManagerReadOnlyImpl method groupPeerReviews.

/**
 * Generate a grouped list of peer reviews with the given list of peer reviews
 *
 * @param peerReviews
 *          The list of peer reviews to group
 * @param justPublic
 *          Specify if we want to group only the public elements in the given list
 * @return PeerReviews element with the PeerReviewSummary elements grouped
 */
@Override
public PeerReviews groupPeerReviews(List<PeerReviewSummary> peerReviews, boolean justPublic) {
    ActivitiesGroupGenerator groupGenerator = new ActivitiesGroupGenerator();
    PeerReviews result = new PeerReviews();
    for (PeerReviewSummary peerReview : peerReviews) {
        if (justPublic && !peerReview.getVisibility().equals(org.orcid.jaxb.model.v3.dev1.common.Visibility.PUBLIC)) {
        // If it is just public and the funding is not public, just
        // ignore it
        } else {
            groupGenerator.group(peerReview);
        }
    }
    List<ActivitiesGroup> groups = groupGenerator.getGroups();
    for (ActivitiesGroup group : groups) {
        Set<GroupAble> groupKeys = group.getGroupKeys();
        Set<GroupableActivity> activities = group.getActivities();
        PeerReviewGroup peerReviewGroup = new PeerReviewGroup();
        // Fill the peer review groups with the external identifiers
        if (groupKeys == null || groupKeys.isEmpty()) {
            // Initialize the ids as an empty list
            peerReviewGroup.getIdentifiers().getExternalIdentifier();
        } else {
            for (GroupAble groupKey : groupKeys) {
                PeerReviewGroupKey key = (PeerReviewGroupKey) groupKey;
                ExternalID id = new ExternalID();
                // TODO: this is not nice
                id.setType(PeerReviewGroupKey.KEY_NAME);
                id.setValue(key.getGroupId());
                peerReviewGroup.getIdentifiers().getExternalIdentifier().add(id);
            }
        }
        // Fill the peer review group with the list of activities
        for (GroupableActivity activity : activities) {
            PeerReviewSummary peerReviewSummary = (PeerReviewSummary) activity;
            peerReviewGroup.getPeerReviewSummary().add(peerReviewSummary);
        }
        // Sort the peer reviews
        Collections.sort(peerReviewGroup.getPeerReviewSummary(), new GroupableActivityComparator());
        result.getPeerReviewGroup().add(peerReviewGroup);
    }
    return result;
}

Example 14 with ExternalID

use of org.orcid.jaxb.model.v3.dev1.record.ExternalID in project ORCID-Source by ORCID.

the class ProfileFundingManagerReadOnlyImpl method groupFundings.

/**
 * Generate a grouped list of funding with the given list of funding
 *
 * @param fundings
 *          The list of fundings to group
 * @param justPublic
 *          Specify if we want to group only the public elements in the given list
 * @return Fundings element with the FundingSummary elements grouped
 */
@Override
public Fundings groupFundings(List<FundingSummary> fundings, boolean justPublic) {
    ActivitiesGroupGenerator groupGenerator = new ActivitiesGroupGenerator();
    Fundings result = new Fundings();
    for (FundingSummary funding : fundings) {
        if (justPublic && !funding.getVisibility().equals(org.orcid.jaxb.model.v3.dev1.common.Visibility.PUBLIC)) {
        // If it is just public and the funding is not public, just
        // ignore it
        } else {
            groupGenerator.group(funding);
        }
    }
    List<ActivitiesGroup> groups = groupGenerator.getGroups();
    for (ActivitiesGroup group : groups) {
        Set<GroupAble> externalIdentifiers = group.getGroupKeys();
        Set<GroupableActivity> activities = group.getActivities();
        FundingGroup fundingGroup = new FundingGroup();
        // Fill the funding groups with the external identifiers
        if (externalIdentifiers == null || externalIdentifiers.isEmpty()) {
            // Initialize the ids as an empty list
            fundingGroup.getIdentifiers().getExternalIdentifier();
        } else {
            for (GroupAble extId : externalIdentifiers) {
                ExternalID fundingExtId = (ExternalID) extId;
                fundingGroup.getIdentifiers().getExternalIdentifier().add(fundingExtId.clone());
            }
        }
        // Fill the funding group with the list of activities
        for (GroupableActivity activity : activities) {
            FundingSummary fundingSummary = (FundingSummary) activity;
            fundingGroup.getFundingSummary().add(fundingSummary);
        }
        // Sort the fundings
        Collections.sort(fundingGroup.getFundingSummary(), new GroupableActivityComparator());
        result.getFundingGroup().add(fundingGroup);
    }
    return result;
}

Example 15 with ExternalID

use of org.orcid.jaxb.model.v3.dev1.record.ExternalID in project ORCID-Source by ORCID.

the class ActivityValidator method checkExternalIdentifiersForDuplicates.

public void checkExternalIdentifiersForDuplicates(ExternalIDs newExtIds, ExternalIDs existingExtIds, Source existingSource, SourceEntity sourceEntity) {
    if (existingExtIds != null && newExtIds != null) {
        for (ExternalID existingId : existingExtIds.getExternalIdentifier()) {
            for (ExternalID newId : newExtIds.getExternalIdentifier()) {
                // normalize the ids before checking equality
                newId.setNormalized(new TransientNonEmptyString(norm.normalise(newId.getType(), newId.getValue())));
                if (existingId.getNormalized() == null)
                    existingId.setNormalized(new TransientNonEmptyString(norm.normalise(existingId.getType(), existingId.getValue())));
                if (areRelationshipsSameButNotBothPartOf(existingId.getRelationship(), newId.getRelationship()) && newId.equals(existingId) && sourceEntity.getSourceId().equals(getExistingSource(existingSource))) {
                    Map<String, String> params = new HashMap<String, String>();
                    params.put("clientName", sourceEntity.getSourceName());
                    throw new OrcidDuplicatedActivityException(params);
                }
            }
        }
    }
}