Examples with Result org.orcid.jaxb.model.v3.dev1.search.Result used on opensource projects

Example 6 with Result

use of org.orcid.jaxb.model.v3.dev1.search.Result in project ORCID-Source by ORCID.

the class ExternalIdentifiersForm method toPersonExternalIdentifiers.

public PersonExternalIdentifiers toPersonExternalIdentifiers() {
    if (externalIdentifiers == null) {
        return null;
    }
    PersonExternalIdentifiers result = new PersonExternalIdentifiers();
    result.setExternalIdentifiers(new ArrayList<PersonExternalIdentifier>());
    for (ExternalIdentifierForm form : externalIdentifiers) {
        result.getExternalIdentifiers().add(form.toPersonExternalIdentifier());
    }
    return result;
}

Example 7 with Result

use of org.orcid.jaxb.model.v3.dev1.search.Result in project ORCID-Source by ORCID.

the class FundingForm method toFunding.

public Funding toFunding() {
    Funding result = new Funding();
    Amount orcidAmount = new Amount();
    if (!PojoUtil.isEmpty(amount))
        orcidAmount.setContent(amount.getValue());
    if (!PojoUtil.isEmpty(currencyCode))
        orcidAmount.setCurrencyCode(currencyCode.getValue());
    result.setAmount(orcidAmount);
    if (!PojoUtil.isEmpty(description))
        result.setDescription(description.getValue());
    if (!PojoUtil.isEmpty(startDate))
        result.setStartDate(new FuzzyDate(startDate.toFuzzyDate()));
    if (!PojoUtil.isEmpty(endDate))
        result.setEndDate(new FuzzyDate(endDate.toFuzzyDate()));
    if (!PojoUtil.isEmpty(putCode))
        result.setPutCode(Long.valueOf(putCode.getValue()));
    if (fundingTitle != null) {
        result.setTitle(fundingTitle.toFundingTitle());
    }
    if (!PojoUtil.isEmpty(fundingType))
        result.setType(FundingType.fromValue(fundingType.getValue()));
    if (organizationDefinedFundingSubType != null && !PojoUtil.isEmpty(organizationDefinedFundingSubType.getSubtype()))
        result.setOrganizationDefinedType(new OrganizationDefinedFundingSubType(organizationDefinedFundingSubType.getSubtype().getValue()));
    if (!PojoUtil.isEmpty(url))
        result.setUrl(new Url(url.getValue()));
    else
        result.setUrl(new Url());
    if (visibility != null)
        result.setVisibility(org.orcid.jaxb.model.v3.dev1.common.Visibility.fromValue(visibility.getVisibility().value()));
    // Set Organization
    Organization organization = new Organization();
    if (!PojoUtil.isEmpty(fundingName))
        organization.setName(fundingName.getValue());
    OrganizationAddress organizationAddress = new OrganizationAddress();
    organization.setAddress(organizationAddress);
    if (!PojoUtil.isEmpty(city))
        organizationAddress.setCity(city.getValue());
    if (!PojoUtil.isEmpty(region)) {
        organizationAddress.setRegion(region.getValue());
    }
    if (!PojoUtil.isEmpty(country)) {
        organizationAddress.setCountry(Iso3166Country.fromValue(country.getValue()));
    }
    if (!PojoUtil.isEmpty(disambiguatedFundingSourceId)) {
        organization.setDisambiguatedOrganization(new DisambiguatedOrganization());
        organization.getDisambiguatedOrganization().setDisambiguatedOrganizationIdentifier(disambiguatedFundingSourceId.getValue());
        organization.getDisambiguatedOrganization().setDisambiguationSource(disambiguationSource.getValue());
    }
    result.setOrganization(organization);
    // Set contributors
    if (contributors != null && !contributors.isEmpty()) {
        FundingContributors fContributors = new FundingContributors();
        for (Contributor contributor : contributors) {
            if (!PojoUtil.isEmtpy(contributor))
                fContributors.getContributor().add(contributor.toFundingContributor());
        }
        result.setContributors(fContributors);
    }
    // Set external identifiers
    if (externalIdentifiers != null && !externalIdentifiers.isEmpty()) {
        ExternalIDs fExternalIdentifiers = new ExternalIDs();
        for (FundingExternalIdentifierForm fExternalIdentifier : externalIdentifiers) {
            if (!PojoUtil.isEmtpy(fExternalIdentifier))
                fExternalIdentifiers.getExternalIdentifier().add(fExternalIdentifier.toFundingExternalIdentifier());
        }
        result.setExternalIdentifiers(fExternalIdentifiers);
    }
    return result;
}

Example 8 with Result

use of org.orcid.jaxb.model.v3.dev1.search.Result in project ORCID-Source by ORCID.

the class AddressesForm method toAddresses.

public Addresses toAddresses() {
    Addresses result = new Addresses();
    if (addresses != null) {
        List<Address> addressList = new ArrayList<Address>();
        for (AddressForm form : addresses) {
            addressList.add(form.toAddress());
        }
        result.setAddress(addressList);
    }
    return result;
}

Example 9 with Result

use of org.orcid.jaxb.model.v3.dev1.search.Result in project ORCID-Source by ORCID.

the class ManageProfileControllerTest method initMocks.

@Before
public void initMocks() throws Exception {
    controller = new ManageProfileController();
    MockitoAnnotations.initMocks(this);
    SecurityContextHolder.getContext().setAuthentication(getAuthentication(USER_ORCID));
    TargetProxyHelper.injectIntoProxy(controller, "profileEntityCacheManager", mockProfileEntityCacheManager);
    TargetProxyHelper.injectIntoProxy(controller, "encryptionManager", mockEncryptionManager);
    TargetProxyHelper.injectIntoProxy(controller, "emailManager", mockEmailManager);
    TargetProxyHelper.injectIntoProxy(controller, "localeManager", mockLocaleManager);
    TargetProxyHelper.injectIntoProxy(controller, "profileEntityManager", mockProfileEntityManager);
    TargetProxyHelper.injectIntoProxy(controller, "givenPermissionToManager", mockGivenPermissionToManager);
    TargetProxyHelper.injectIntoProxy(controller, "givenPermissionToManagerReadOnly", mockGivenPermissionToManagerReadOnly);
    TargetProxyHelper.injectIntoProxy(controller, "orcidSecurityManager", mockOrcidSecurityManager);
    TargetProxyHelper.injectIntoProxy(controller, "orcidIdentifierUtils", mockOrcidIdentifierUtils);
    TargetProxyHelper.injectIntoProxy(controller, "profileLastModifiedAspect", profileLastModifiedAspect);
    when(mockOrcidSecurityManager.isPasswordConfirmationRequired()).thenReturn(true);
    when(mockEncryptionManager.hashMatches(Mockito.anyString(), Mockito.anyString())).thenReturn(true);
    when(mockEncryptionManager.hashMatches(Mockito.eq("invalid password"), Mockito.anyString())).thenReturn(false);
    when(mockProfileEntityManager.deprecateProfile(Mockito.eq(DEPRECATED_USER_ORCID), Mockito.eq(USER_ORCID), Mockito.eq(ProfileEntity.USER_DRIVEN_DEPRECATION), Mockito.isNull())).thenReturn(true);
    when(mockProfileEntityManager.deprecateProfile(Mockito.eq(DEPRECATED_USER_ORCID), Mockito.eq(USER_ORCID), Mockito.anyString(), Mockito.anyString())).thenReturn(true);
    when(mockProfileEntityManager.deprecateProfile(Mockito.anyString(), Mockito.anyString(), Mockito.anyString(), Mockito.anyString())).thenReturn(false);
    when(profileLastModifiedAspect.retrieveLastModifiedDate(anyString())).thenReturn(new Date());
    when(mockOrcidIdentifierUtils.buildOrcidIdentifier(Mockito.anyString())).thenAnswer(new Answer<OrcidIdentifier>() {

        @Override
        public OrcidIdentifier answer(InvocationOnMock invocation) throws Throwable {
            OrcidIdentifier result = new OrcidIdentifier();
            result.setPath(invocation.getArgument(0));
            return result;
        }
    });
    when(mockLocaleManager.resolveMessage(Mockito.anyString(), Mockito.any())).thenAnswer(new Answer<String>() {

        @Override
        public String answer(InvocationOnMock invocation) throws Throwable {
            return invocation.getArgument(0);
        }
    });
    when(mockProfileEntityCacheManager.retrieve(Mockito.anyString())).then(new Answer<ProfileEntity>() {

        @Override
        public ProfileEntity answer(InvocationOnMock invocation) throws Throwable {
            ProfileEntity entity = new ProfileEntity();
            entity.setId(invocation.getArgument(0));
            Set<GivenPermissionToEntity> givenPermissionTo = new HashSet<GivenPermissionToEntity>();
            IntStream.range(0, 2).forEachOrdered(i -> {
                GivenPermissionToEntity e1 = new GivenPermissionToEntity();
                e1.setId(Long.valueOf(i));
                Date now = new Date();
                e1.setApprovalDate(now);
                e1.setDateCreated(now);
                e1.setGiver(invocation.getArgument(0));
                ProfileSummaryEntity ps = new ProfileSummaryEntity();
                RecordNameEntity recordName = new RecordNameEntity();
                recordName.setVisibility(org.orcid.jaxb.model.common_v2.Visibility.PUBLIC);
                if (i == 0) {
                    ps.setId("0000-0000-0000-0004");
                    recordName.setCreditName("Credit Name");
                } else {
                    ps.setId("0000-0000-0000-0005");
                    recordName.setFamilyName("Family Name");
                    recordName.setGivenNames("Given Names");
                }
                ps.setRecordNameEntity(recordName);
                e1.setReceiver(ps);
                givenPermissionTo.add(e1);
            });
            entity.setGivenPermissionTo(givenPermissionTo);
            EmailEntity email1 = new EmailEntity();
            email1.setId(invocation.getArgument(0) + "_1@test.orcid.org");
            email1.setVerified(true);
            email1.setCurrent(true);
            email1.setDateCreated(new Date());
            email1.setLastModified(new Date());
            email1.setPrimary(true);
            email1.setVisibility(org.orcid.jaxb.model.common_v2.Visibility.PUBLIC);
            EmailEntity email2 = new EmailEntity();
            email2.setId(invocation.getArgument(0) + "_2@test.orcid.org");
            email2.setVerified(true);
            email2.setCurrent(false);
            email2.setDateCreated(new Date());
            email2.setLastModified(new Date());
            email2.setPrimary(false);
            email2.setVisibility(org.orcid.jaxb.model.common_v2.Visibility.PUBLIC);
            Set<EmailEntity> emails = new HashSet<EmailEntity>();
            emails.add(email1);
            emails.add(email2);
            entity.setEmails(emails);
            entity.setRecordNameEntity(getRecordName(invocation.getArgument(0)));
            entity.setEncryptedPassword("password");
            return entity;
        }
    });
    when(mockEmailManager.getEmails(Mockito.anyString())).thenAnswer(new Answer<Emails>() {

        @Override
        public Emails answer(InvocationOnMock invocation) throws Throwable {
            Emails emails = new Emails();
            Email email1 = new Email();
            email1.setEmail(invocation.getArgument(0) + "_1@test.orcid.org");
            email1.setVisibility(Visibility.PUBLIC);
            emails.getEmails().add(email1);
            Email email2 = new Email();
            email2.setEmail(invocation.getArgument(0) + "_2@test.orcid.org");
            email2.setVisibility(Visibility.PUBLIC);
            emails.getEmails().add(email2);
            return emails;
        }
    });
    when(mockEmailManager.findCaseInsensitive(Mockito.anyString())).thenAnswer(new Answer<EmailEntity>() {

        @Override
        public EmailEntity answer(InvocationOnMock invocation) throws Throwable {
            String emailString = invocation.getArgument(0);
            String orcidString = emailString.substring(0, (emailString.indexOf("_")));
            EmailEntity email = new EmailEntity();
            email.setId(emailString);
            email.setVisibility(org.orcid.jaxb.model.common_v2.Visibility.PUBLIC);
            ProfileEntity entity = new ProfileEntity(orcidString);
            entity.setEncryptedPassword("password");
            entity.setRecordNameEntity(getRecordName(orcidString));
            email.setProfile(entity);
            return email;
        }
    });
    when(mockGivenPermissionToManagerReadOnly.findByGiver(anyString(), anyLong())).thenAnswer(new Answer<List<DelegateForm>>() {

        @Override
        public List<DelegateForm> answer(InvocationOnMock invocation) throws Throwable {
            XMLGregorianCalendar now = DateUtils.convertToXMLGregorianCalendar(new Date());
            List<DelegateForm> list = new ArrayList<DelegateForm>();
            DelegateForm one = new DelegateForm();
            one.setGiverOrcid(new OrcidIdentifier(USER_ORCID));
            one.setReceiverOrcid(new OrcidIdentifier("0000-0000-0000-0004"));
            one.setReceiverName(Text.valueOf("Credit Name"));
            one.setApprovalDate(now);
            list.add(one);
            DelegateForm two = new DelegateForm();
            two.setGiverOrcid(new OrcidIdentifier(USER_ORCID));
            two.setReceiverOrcid(new OrcidIdentifier("0000-0000-0000-0005"));
            two.setReceiverName(Text.valueOf("Given Names Family Name"));
            two.setApprovalDate(now);
            list.add(two);
            return list;
        }
    });
}

Example 10 with Result

use of org.orcid.jaxb.model.v3.dev1.search.Result in project ORCID-Source by ORCID.

the class AffiliationsManagerImpl method updateAffiliation.

public Affiliation updateAffiliation(String orcid, Affiliation affiliation, boolean isApiRequest, AffiliationType type) {
    OrgAffiliationRelationEntity entity = orgAffiliationRelationDao.getOrgAffiliationRelation(orcid, affiliation.getPutCode());
    SourceEntity sourceEntity = sourceManager.retrieveSourceEntity();
    // Save the original source
    String existingSourceId = entity.getSourceId();
    String existingClientSourceId = entity.getClientSourceId();
    org.orcid.jaxb.model.common_v2.Visibility originalVisibility = entity.getVisibility();
    orcidSecurityManager.checkSource(entity);
    activityValidator.validateAffiliation(affiliation, sourceEntity, false, isApiRequest, org.orcid.jaxb.model.v3.dev1.common.Visibility.fromValue(originalVisibility.value()));
    if (isApiRequest) {
        checkAffiliationExternalIDsForDuplicates(orcid, affiliation, sourceEntity);
    }
    switch(type) {
        case DISTINCTION:
            jpaJaxbDistinctionAdapter.toOrgAffiliationRelationEntity((Distinction) affiliation, entity);
            break;
        case EDUCATION:
            jpaJaxbEducationAdapter.toOrgAffiliationRelationEntity((Education) affiliation, entity);
            break;
        case EMPLOYMENT:
            jpaJaxbEmploymentAdapter.toOrgAffiliationRelationEntity((Employment) affiliation, entity);
            break;
        case INVITED_POSITION:
            jpaJaxbInvitedPositionAdapter.toOrgAffiliationRelationEntity((InvitedPosition) affiliation, entity);
            break;
        case MEMBERSHIP:
            jpaJaxbMembershipAdapter.toOrgAffiliationRelationEntity((Membership) affiliation, entity);
            break;
        case QUALIFICATION:
            jpaJaxbQualificationAdapter.toOrgAffiliationRelationEntity((Qualification) affiliation, entity);
            break;
        case SERVICE:
            jpaJaxbServiceAdapter.toOrgAffiliationRelationEntity((Service) affiliation, entity);
            break;
    }
    entity.setVisibility(originalVisibility);
    // Be sure it doesn't overwrite the source
    entity.setSourceId(existingSourceId);
    entity.setClientSourceId(existingClientSourceId);
    // Updates the give organization with the latest organization from
    // database, or, create a new one
    OrgEntity updatedOrganization = orgManager.getOrgEntity(affiliation);
    entity.setOrg(updatedOrganization);
    entity.setAffiliationType(type);
    entity = orgAffiliationRelationDao.merge(entity);
    orgAffiliationRelationDao.flush();
    Affiliation result = null;
    switch(type) {
        case DISTINCTION:
            notificationManager.sendAmendEmail(orcid, AmendedSection.DISTINCTION, createItemList(entity));
            result = jpaJaxbDistinctionAdapter.toDistinction(entity);
            break;
        case EDUCATION:
            notificationManager.sendAmendEmail(orcid, AmendedSection.EDUCATION, createItemList(entity));
            result = jpaJaxbEducationAdapter.toEducation(entity);
            break;
        case EMPLOYMENT:
            notificationManager.sendAmendEmail(orcid, AmendedSection.EMPLOYMENT, createItemList(entity));
            result = jpaJaxbEmploymentAdapter.toEmployment(entity);
            break;
        case INVITED_POSITION:
            notificationManager.sendAmendEmail(orcid, AmendedSection.INVITED_POSITION, createItemList(entity));
            result = jpaJaxbInvitedPositionAdapter.toInvitedPosition(entity);
            break;
        case MEMBERSHIP:
            notificationManager.sendAmendEmail(orcid, AmendedSection.MEMBERSHIP, createItemList(entity));
            result = jpaJaxbMembershipAdapter.toMembership(entity);
            break;
        case QUALIFICATION:
            notificationManager.sendAmendEmail(orcid, AmendedSection.QUALIFICATION, createItemList(entity));
            result = jpaJaxbQualificationAdapter.toQualification(entity);
            break;
        case SERVICE:
            notificationManager.sendAmendEmail(orcid, AmendedSection.SERVICE, createItemList(entity));
            result = jpaJaxbServiceAdapter.toService(entity);
            break;
    }
    return result;
}