Examples with OrgDisambiguatedExternalIdentifierEntity org.orcid.persistence.jpa.entities.OrgDisambiguatedExternalIdentifierEntity used on opensource projects

Example 1 with OrgDisambiguatedExternalIdentifierEntity

use of org.orcid.persistence.jpa.entities.OrgDisambiguatedExternalIdentifierEntity in project ORCID-Source by ORCID.

the class LoadGridData method createExternalIdentifier.

/**
 * Creates an external identifier in the
 * org_disambiguated_external_identifier table
 */
private boolean createExternalIdentifier(OrgDisambiguatedEntity disambiguatedOrg, String identifier, String externalIdType, Boolean preferred) {
    LOGGER.info("Creating external identifier for {}", disambiguatedOrg.getId());
    Date creationDate = new Date();
    OrgDisambiguatedExternalIdentifierEntity externalIdentifier = new OrgDisambiguatedExternalIdentifierEntity();
    externalIdentifier.setIdentifier(identifier);
    externalIdentifier.setIdentifierType(externalIdType);
    externalIdentifier.setOrgDisambiguated(disambiguatedOrg);
    externalIdentifier.setDateCreated(creationDate);
    externalIdentifier.setLastModified(creationDate);
    externalIdentifier.setPreferred(preferred);
    orgDisambiguatedExternalIdentifierDao.persist(externalIdentifier);
    addedExternalIdentifiers++;
    return true;
}

Example 2 with OrgDisambiguatedExternalIdentifierEntity

use of org.orcid.persistence.jpa.entities.OrgDisambiguatedExternalIdentifierEntity in project ORCID-Source by ORCID.

the class OrgDisambiguatedManagerImpl method findInDB.

@Override
@Transactional
public OrgDisambiguated findInDB(Long id) {
    OrgDisambiguatedEntity orgDisambiguatedEntity = orgDisambiguatedDaoReadOnly.find(id);
    OrgDisambiguated org = new OrgDisambiguated();
    org.setValue(orgDisambiguatedEntity.getName());
    org.setCity(orgDisambiguatedEntity.getCity());
    org.setRegion(orgDisambiguatedEntity.getRegion());
    org.setCountry(orgDisambiguatedEntity.getCountry() != null ? orgDisambiguatedEntity.getCountry().value() : null);
    org.setOrgType(orgDisambiguatedEntity.getOrgType());
    org.setSourceId(orgDisambiguatedEntity.getSourceId());
    org.setSourceType(orgDisambiguatedEntity.getSourceType());
    org.setUrl(orgDisambiguatedEntity.getUrl());
    Map<String, OrgDisambiguatedExternalIdentifiers> externalIdsMap = new HashMap<String, OrgDisambiguatedExternalIdentifiers>();
    if (orgDisambiguatedEntity.getExternalIdentifiers() != null && !orgDisambiguatedEntity.getExternalIdentifiers().isEmpty()) {
        for (OrgDisambiguatedExternalIdentifierEntity extIdEntity : orgDisambiguatedEntity.getExternalIdentifiers()) {
            String type = extIdEntity.getIdentifierType();
            String identifier = extIdEntity.getIdentifier();
            Boolean preferred = extIdEntity.getPreferred();
            OrgDisambiguatedExternalIdentifiers extId = null;
            if (externalIdsMap.containsKey(type)) {
                extId = externalIdsMap.get(type);
            } else {
                extId = new OrgDisambiguatedExternalIdentifiers();
                extId.setIdentifierType(type);
                externalIdsMap.put(type, extId);
            }
            if (preferred) {
                extId.setPreferred(identifier);
            }
            extId.getAll().add(identifier);
        }
        if (!externalIdsMap.isEmpty()) {
            List<OrgDisambiguatedExternalIdentifiers> extIds = new ArrayList<OrgDisambiguatedExternalIdentifiers>();
            externalIdsMap.keySet().stream().sorted().collect(Collectors.toList()).forEach(k -> {
                extIds.add(externalIdsMap.get(k));
            });
            org.setOrgDisambiguatedExternalIdentifiers(extIds);
        }
    }
    return org;
}

Example 3 with OrgDisambiguatedExternalIdentifierEntity

use of org.orcid.persistence.jpa.entities.OrgDisambiguatedExternalIdentifierEntity in project ORCID-Source by ORCID.

the class LoadGridDataTest method execute_NothingToCreateNothingToUpdate_Test.

@SuppressWarnings("deprecation")
@Test
public void execute_NothingToCreateNothingToUpdate_Test() throws URISyntaxException {
    when(orgDisambiguatedDao.findBySourceIdAndSourceType("grid.1", "GRID")).thenAnswer(new Answer<OrgDisambiguatedEntity>() {

        @Override
        public OrgDisambiguatedEntity answer(InvocationOnMock invocation) throws Throwable {
            OrgDisambiguatedEntity entity = new OrgDisambiguatedEntity();
            entity.setId(1L);
            entity.setName("org_1");
            entity.setSourceId("grid.1");
            entity.setCity("City One");
            entity.setCountry(Iso3166Country.US);
            entity.setOrgType("type_1");
            entity.setRegion("Alabama");
            entity.setSourceType("GRID");
            entity.setUrl("http://link1.com");
            return entity;
        }
    });
    OrgDisambiguatedExternalIdentifierEntity extId = new OrgDisambiguatedExternalIdentifierEntity();
    extId.setPreferred(Boolean.FALSE);
    OrgDisambiguatedExternalIdentifierEntity extIdPreferred = new OrgDisambiguatedExternalIdentifierEntity();
    extIdPreferred.setPreferred(Boolean.TRUE);
    when(orgDisambiguatedExternalIdentifierDao.findByDetails(1L, "ISNI1", "ISNI")).thenReturn(extId);
    when(orgDisambiguatedExternalIdentifierDao.findByDetails(1L, "FUNDREF1", "FUNDREF")).thenReturn(extIdPreferred);
    when(orgDisambiguatedExternalIdentifierDao.findByDetails(1L, "ORGREF1", "ORGREF")).thenReturn(extId);
    when(orgDisambiguatedExternalIdentifierDao.findByDetails(1L, "WIKIDATA1", "WIKIDATA")).thenReturn(extId);
    when(orgDisambiguatedExternalIdentifierDao.findByDetails(1L, "http://en.wikipedia.org/wiki/org_1", "WIKIPEDIA_URL")).thenReturn(extId);
    Path path = Paths.get(getClass().getClassLoader().getResource("grid/grid_1_org_5_external_identifiers.json").toURI());
    File testFile = path.toFile();
    loadGridData.setFileToLoad(testFile);
    loadGridData.execute();
    verify(orgDisambiguatedDao, times(0)).persist(Matchers.any(OrgDisambiguatedEntity.class));
    verify(orgDisambiguatedDao, times(0)).merge(Matchers.any(OrgDisambiguatedEntity.class));
    verify(orgDisambiguatedExternalIdentifierDao, times(0)).persist(Matchers.any(OrgDisambiguatedExternalIdentifierEntity.class));
    assertEquals(0L, loadGridData.getAddedDisambiguatedOrgs());
    assertEquals(0L, loadGridData.getAddedExternalIdentifiers());
    assertEquals(0L, loadGridData.getUpdatedOrgs());
    assertEquals(0L, loadGridData.getDeprecatedOrgs());
    assertEquals(0L, loadGridData.getObsoletedOrgs());
    assertEquals(0L, loadGridData.getUpdatedExternalIdentifiers());
}

Example 4 with OrgDisambiguatedExternalIdentifierEntity

use of org.orcid.persistence.jpa.entities.OrgDisambiguatedExternalIdentifierEntity in project ORCID-Source by ORCID.

the class LoadRinggoldDataTest method test_AddExternalIdentifier.

@Test
public void test_AddExternalIdentifier() throws URISyntaxException {
    setupInitialMocks();
    Path path = Paths.get(getClass().getClassLoader().getResource("ringgold/test_AddExternalIdentifier/").toURI());
    File testDirectory = path.toFile();
    assertTrue(testDirectory.exists());
    loader.setDirectory(testDirectory);
    loader.execute();
    verify(mockOrgDisambiguatedDao, times(0)).persist(any());
    verify(mockOrgDisambiguatedDao, times(0)).merge(any());
    ArgumentCaptor<OrgDisambiguatedExternalIdentifierEntity> captor = ArgumentCaptor.forClass(OrgDisambiguatedExternalIdentifierEntity.class);
    verify(mockOrgDisambiguatedExternalIdentifierDao, times(1)).persist(captor.capture());
    verify(mockOrgDisambiguatedExternalIdentifierDao, times(0)).merge(any());
    verify(mockOrgDisambiguatedExternalIdentifierDao, times(0)).remove(anyLong());
    List<OrgDisambiguatedExternalIdentifierEntity> list = captor.getAllValues();
    assertEquals(1, list.size());
    OrgDisambiguatedExternalIdentifierEntity entity = list.get(0);
    assertEquals("9", entity.getIdentifier());
    assertEquals("ISNI", entity.getIdentifierType());
    assertEquals(false, entity.getPreferred());
    assertEquals(Long.valueOf(1000), entity.getOrgDisambiguated().getId());
    verify(mockOrgDao, times(0)).persist(any());
    verify(mockOrgDao, times(0)).merge(any());
}

Example 5 with OrgDisambiguatedExternalIdentifierEntity

use of org.orcid.persistence.jpa.entities.OrgDisambiguatedExternalIdentifierEntity in project ORCID-Source by ORCID.

the class OrgDisambiguatedManagerTest method getOrgDisambiguatedExternalIdentifierEntity.

private OrgDisambiguatedExternalIdentifierEntity getOrgDisambiguatedExternalIdentifierEntity(String identifierType, String identifier, Boolean preferred) {
    OrgDisambiguatedExternalIdentifierEntity entity = new OrgDisambiguatedExternalIdentifierEntity();
    entity.setIdentifierType(identifierType);
    entity.setIdentifier(identifier);
    entity.setPreferred(preferred);
    return entity;
}