Examples with OrgDisambiguatedExternalIdentifierEntity org.orcid.persistence.jpa.entities.OrgDisambiguatedExternalIdentifierEntity used on opensource projects

Example 11 with OrgDisambiguatedExternalIdentifierEntity

use of org.orcid.persistence.jpa.entities.OrgDisambiguatedExternalIdentifierEntity in project ORCID-Source by ORCID.

the class LoadGridDataTest method execute_AddMissingWikipediaExtId_Test.

@Test
public void execute_AddMissingWikipediaExtId_Test() throws URISyntaxException {
    when(orgDisambiguatedDao.findBySourceIdAndSourceType("grid.1", "GRID")).thenAnswer(new Answer<OrgDisambiguatedEntity>() {

        @Override
        public OrgDisambiguatedEntity answer(InvocationOnMock invocation) throws Throwable {
            OrgDisambiguatedEntity entity = new OrgDisambiguatedEntity();
            entity.setId(1L);
            entity.setName("org_1");
            entity.setSourceId("grid.1");
            entity.setCity("City One");
            entity.setCountry(Iso3166Country.US);
            entity.setOrgType("type_1");
            entity.setRegion("Alabama");
            entity.setSourceType("GRID");
            entity.setStatus("active");
            entity.setUrl("http://link1.com");
            return entity;
        }
    });
    OrgDisambiguatedExternalIdentifierEntity extId = new OrgDisambiguatedExternalIdentifierEntity();
    extId.setPreferred(false);
    OrgDisambiguatedExternalIdentifierEntity extIdPreferred = new OrgDisambiguatedExternalIdentifierEntity();
    extIdPreferred.setPreferred(true);
    when(orgDisambiguatedExternalIdentifierDao.findByDetails(1L, "ISNI1", "ISNI")).thenReturn(extId);
    when(orgDisambiguatedExternalIdentifierDao.findByDetails(1L, "FUNDREF1", "FUNDREF")).thenReturn(extIdPreferred);
    when(orgDisambiguatedExternalIdentifierDao.findByDetails(1L, "ORGREF1", "ORGREF")).thenReturn(extId);
    when(orgDisambiguatedExternalIdentifierDao.findByDetails(1L, "WIKIDATA1", "WIKIDATA")).thenReturn(extId);
    Path path = Paths.get(getClass().getClassLoader().getResource("grid/grid_1_org_5_external_identifiers.json").toURI());
    File testFile = path.toFile();
    loadGridData.setFileToLoad(testFile);
    loadGridData.execute();
    assertEquals(0L, loadGridData.getAddedDisambiguatedOrgs());
    assertEquals(1L, loadGridData.getAddedExternalIdentifiers());
    assertEquals(0L, loadGridData.getUpdatedOrgs());
    assertEquals(0L, loadGridData.getDeprecatedOrgs());
    assertEquals(0L, loadGridData.getObsoletedOrgs());
    assertEquals(0L, loadGridData.getUpdatedExternalIdentifiers());
    ArgumentCaptor<OrgDisambiguatedExternalIdentifierEntity> captor = ArgumentCaptor.forClass(OrgDisambiguatedExternalIdentifierEntity.class);
    verify(orgDisambiguatedExternalIdentifierDao).persist(captor.capture());
    OrgDisambiguatedExternalIdentifierEntity orgToBeUpdated = captor.getValue();
    assertEquals("http://en.wikipedia.org/wiki/org_1", orgToBeUpdated.getIdentifier());
    assertEquals("WIKIPEDIA_URL", orgToBeUpdated.getIdentifierType());
    assertEquals(Boolean.TRUE, orgToBeUpdated.getPreferred());
}

Example 12 with OrgDisambiguatedExternalIdentifierEntity

use of org.orcid.persistence.jpa.entities.OrgDisambiguatedExternalIdentifierEntity in project ORCID-Source by ORCID.

the class LoadGridDataTest method execute_UpdatePreferredIndicator_Test.

@SuppressWarnings("deprecation")
@Test
public void execute_UpdatePreferredIndicator_Test() throws URISyntaxException {
    when(orgDisambiguatedDao.findBySourceIdAndSourceType("grid.1", "GRID")).thenAnswer(new Answer<OrgDisambiguatedEntity>() {

        @Override
        public OrgDisambiguatedEntity answer(InvocationOnMock invocation) throws Throwable {
            OrgDisambiguatedEntity entity = new OrgDisambiguatedEntity();
            entity.setId(1L);
            entity.setName("org_1");
            entity.setSourceId("grid.1");
            entity.setCity("City One");
            entity.setCountry(Iso3166Country.US);
            entity.setOrgType("type_1");
            entity.setRegion("Alabama");
            entity.setSourceType("GRID");
            entity.setUrl("http://link1.com");
            return entity;
        }
    });
    // On DB WIKIDATA1 is preferred, but in the file WIKIDATA2 is the preferred one
    OrgDisambiguatedExternalIdentifierEntity wikidata1 = new OrgDisambiguatedExternalIdentifierEntity();
    wikidata1.setIdentifier("WIKIDATA1");
    wikidata1.setIdentifierType("WIKIDATA");
    wikidata1.setPreferred(Boolean.TRUE);
    OrgDisambiguatedExternalIdentifierEntity wikidata2 = new OrgDisambiguatedExternalIdentifierEntity();
    wikidata2.setIdentifier("WIKIDATA2");
    wikidata2.setIdentifierType("WIKIDATA");
    wikidata2.setPreferred(Boolean.FALSE);
    when(orgDisambiguatedExternalIdentifierDao.findByDetails(1L, "WIKIDATA1", "WIKIDATA")).thenReturn(wikidata1);
    when(orgDisambiguatedExternalIdentifierDao.findByDetails(1L, "WIKIDATA2", "WIKIDATA")).thenReturn(wikidata2);
    Path path = Paths.get(getClass().getClassLoader().getResource("grid/grid_1_org_2_ext_ids_#2_preferred.json").toURI());
    File testFile = path.toFile();
    loadGridData.setFileToLoad(testFile);
    loadGridData.execute();
    verify(orgDisambiguatedDao, times(0)).persist(Matchers.any(OrgDisambiguatedEntity.class));
    verify(orgDisambiguatedDao, times(0)).merge(Matchers.any(OrgDisambiguatedEntity.class));
    verify(orgDisambiguatedExternalIdentifierDao, times(0)).persist(Matchers.any(OrgDisambiguatedExternalIdentifierEntity.class));
    assertEquals(0L, loadGridData.getAddedDisambiguatedOrgs());
    assertEquals(0L, loadGridData.getAddedExternalIdentifiers());
    assertEquals(0L, loadGridData.getUpdatedOrgs());
    assertEquals(0L, loadGridData.getDeprecatedOrgs());
    assertEquals(0L, loadGridData.getObsoletedOrgs());
    assertEquals(2L, loadGridData.getUpdatedExternalIdentifiers());
    ArgumentCaptor<OrgDisambiguatedExternalIdentifierEntity> captor = ArgumentCaptor.forClass(OrgDisambiguatedExternalIdentifierEntity.class);
    verify(orgDisambiguatedExternalIdentifierDao, times(2)).merge(captor.capture());
    List<OrgDisambiguatedExternalIdentifierEntity> extIdsToBeUpdated = captor.getAllValues();
    OrgDisambiguatedExternalIdentifierEntity wikidata1ExtId = extIdsToBeUpdated.get(0);
    assertEquals("WIKIDATA1", wikidata1ExtId.getIdentifier());
    assertEquals("WIKIDATA", wikidata1ExtId.getIdentifierType());
    assertEquals(Boolean.FALSE, wikidata1ExtId.getPreferred());
    OrgDisambiguatedExternalIdentifierEntity wikidata2ExtId = extIdsToBeUpdated.get(1);
    assertEquals("WIKIDATA2", wikidata2ExtId.getIdentifier());
    assertEquals("WIKIDATA", wikidata2ExtId.getIdentifierType());
    assertEquals(Boolean.TRUE, wikidata2ExtId.getPreferred());
}

Example 13 with OrgDisambiguatedExternalIdentifierEntity

use of org.orcid.persistence.jpa.entities.OrgDisambiguatedExternalIdentifierEntity in project ORCID-Source by ORCID.

the class LoadGridDataTest method execute_JustAddOneExeternalIdentifier_Test.

@Test
public void execute_JustAddOneExeternalIdentifier_Test() throws URISyntaxException {
    when(orgDisambiguatedDao.findBySourceIdAndSourceType("grid.1", "GRID")).thenAnswer(new Answer<OrgDisambiguatedEntity>() {

        @Override
        public OrgDisambiguatedEntity answer(InvocationOnMock invocation) throws Throwable {
            OrgDisambiguatedEntity entity = new OrgDisambiguatedEntity();
            entity.setId(1L);
            entity.setName("org_1");
            entity.setSourceId("grid.1");
            entity.setCity("City One");
            entity.setCountry(Iso3166Country.US);
            entity.setOrgType("type_1");
            entity.setRegion("Alabama");
            entity.setSourceType("GRID");
            entity.setUrl("http://link1.com");
            return entity;
        }
    });
    OrgDisambiguatedExternalIdentifierEntity extId = new OrgDisambiguatedExternalIdentifierEntity();
    extId.setPreferred(Boolean.FALSE);
    OrgDisambiguatedExternalIdentifierEntity extIdPreferred = new OrgDisambiguatedExternalIdentifierEntity();
    extIdPreferred.setPreferred(Boolean.TRUE);
    when(orgDisambiguatedExternalIdentifierDao.findByDetails(1L, "ISNI1", "ISNI")).thenReturn(extId);
    when(orgDisambiguatedExternalIdentifierDao.findByDetails(1L, "FUNDREF1", "FUNDREF")).thenReturn(extIdPreferred);
    when(orgDisambiguatedExternalIdentifierDao.findByDetails(1L, "ORGREF1", "ORGREF")).thenReturn(extId);
    when(orgDisambiguatedExternalIdentifierDao.findByDetails(1L, "WIKIDATA1", "WIKIDATA")).thenReturn(extId);
    when(orgDisambiguatedExternalIdentifierDao.findByDetails(1L, "http://en.wikipedia.org/wiki/org_1", "WIKIPEDIA_URL")).thenReturn(extId);
    Path path = Paths.get(getClass().getClassLoader().getResource("grid/grid_1_org_6_external_identifiers.json").toURI());
    File testFile = path.toFile();
    loadGridData.setFileToLoad(testFile);
    loadGridData.execute();
    verify(orgDisambiguatedDao, times(0)).persist(Matchers.any(OrgDisambiguatedEntity.class));
    verify(orgDisambiguatedDao, times(0)).merge(Matchers.any(OrgDisambiguatedEntity.class));
    verify(orgDisambiguatedExternalIdentifierDao, times(1)).persist(Matchers.any(OrgDisambiguatedExternalIdentifierEntity.class));
    assertEquals(0L, loadGridData.getAddedDisambiguatedOrgs());
    assertEquals(1L, loadGridData.getAddedExternalIdentifiers());
    assertEquals(0L, loadGridData.getUpdatedOrgs());
    assertEquals(0L, loadGridData.getDeprecatedOrgs());
    assertEquals(0L, loadGridData.getObsoletedOrgs());
    assertEquals(0L, loadGridData.getUpdatedExternalIdentifiers());
}

Example 14 with OrgDisambiguatedExternalIdentifierEntity

use of org.orcid.persistence.jpa.entities.OrgDisambiguatedExternalIdentifierEntity in project ORCID-Source by ORCID.

the class LoadRinggoldDataTest method setupInitialMocks.

private void setupInitialMocks() {
    when(mockOrgDisambiguatedDao.findBySourceIdAndSourceType(anyString(), eq("RINGGOLD"))).thenAnswer(new Answer<OrgDisambiguatedEntity>() {

        @Override
        public OrgDisambiguatedEntity answer(InvocationOnMock invocation) throws Throwable {
            Long ringgoldId = Long.valueOf((String) invocation.getArgument(0));
            if (ringgoldId < 1L || ringgoldId > 4L) {
                return null;
            }
            OrgDisambiguatedEntity entity = new OrgDisambiguatedEntity();
            // 1000, 2000, 3000, 4000
            entity.setId(ringgoldId * 1000);
            entity.setSourceId(String.valueOf(ringgoldId));
            entity.setSourceType("RINGGOLD");
            OrgDisambiguatedExternalIdentifierEntity extId1, extId2;
            Set<OrgDisambiguatedExternalIdentifierEntity> extIds;
            switch(String.valueOf(ringgoldId)) {
                case "1":
                    entity.setName("1. Name");
                    entity.setCountry(Iso3166Country.US);
                    entity.setCity("City#1");
                    entity.setRegion("State#1");
                    entity.setOrgType("type/1");
                    entity.setSourceParentId(null);
                    entity.setStatus(null);
                    extId1 = new OrgDisambiguatedExternalIdentifierEntity();
                    extId1.setId(1L);
                    extId1.setOrgDisambiguated(entity);
                    extId1.setIdentifier("1");
                    extId1.setIdentifierType("ISNI");
                    extId2 = new OrgDisambiguatedExternalIdentifierEntity();
                    extId2.setId(2L);
                    extId2.setOrgDisambiguated(entity);
                    extId2.setIdentifier("2");
                    extId2.setIdentifierType("IPED");
                    extIds = new HashSet<>();
                    extIds.add(extId1);
                    extIds.add(extId2);
                    entity.setExternalIdentifiers(extIds);
                    break;
                case "2":
                    entity.setName("2. Name");
                    entity.setCountry(Iso3166Country.CR);
                    entity.setCity("City#2");
                    entity.setRegion(null);
                    entity.setOrgType("type/2");
                    entity.setSourceParentId(null);
                    entity.setStatus(null);
                    extId1 = new OrgDisambiguatedExternalIdentifierEntity();
                    extId1.setId(3L);
                    extId1.setOrgDisambiguated(entity);
                    extId1.setIdentifier("3");
                    extId1.setIdentifierType("NCES");
                    extId2 = new OrgDisambiguatedExternalIdentifierEntity();
                    extId2.setId(4L);
                    extId2.setOrgDisambiguated(entity);
                    extId2.setIdentifier("4");
                    extId2.setIdentifierType("OFR");
                    extIds = new HashSet<>();
                    extIds.add(extId1);
                    extIds.add(extId2);
                    entity.setExternalIdentifiers(extIds);
                    break;
                case "3":
                    entity.setName("3. Name");
                    entity.setCountry(Iso3166Country.US);
                    entity.setCity("City#3");
                    entity.setRegion(null);
                    entity.setOrgType("type/3");
                    entity.setSourceParentId(null);
                    entity.setStatus(null);
                    extId1 = new OrgDisambiguatedExternalIdentifierEntity();
                    extId1.setId(5L);
                    extId1.setOrgDisambiguated(entity);
                    extId1.setIdentifier("5");
                    extId1.setIdentifierType("ISNI");
                    extId2 = new OrgDisambiguatedExternalIdentifierEntity();
                    extId2.setId(6L);
                    extId2.setOrgDisambiguated(entity);
                    extId2.setIdentifier("6");
                    extId2.setIdentifierType("IPED");
                    extIds = new HashSet<>();
                    extIds.add(extId1);
                    extIds.add(extId2);
                    entity.setExternalIdentifiers(extIds);
                    break;
                case "4":
                    entity.setName("4. Name");
                    entity.setCountry(Iso3166Country.CR);
                    entity.setCity("City#4");
                    entity.setRegion("State#4");
                    entity.setOrgType("type/4");
                    entity.setSourceParentId("1");
                    entity.setStatus(null);
                    extId1 = new OrgDisambiguatedExternalIdentifierEntity();
                    extId1.setId(7L);
                    extId1.setOrgDisambiguated(entity);
                    extId1.setIdentifier("7");
                    extId1.setIdentifierType("NCES");
                    extId2 = new OrgDisambiguatedExternalIdentifierEntity();
                    extId1.setId(8L);
                    extId2.setOrgDisambiguated(entity);
                    extId2.setIdentifier("8");
                    extId2.setIdentifierType("OFR");
                    extIds = new HashSet<>();
                    extIds.add(extId1);
                    extIds.add(extId2);
                    entity.setExternalIdentifiers(extIds);
                    break;
            }
            return entity;
        }
    });
    when(mockOrgDao.findByNameCityRegionAndCountry(anyString(), anyString(), nullable(String.class), any())).thenAnswer(new Answer<OrgEntity>() {

        @Override
        public OrgEntity answer(InvocationOnMock invocation) throws Throwable {
            String name = invocation.getArgument(0);
            String city = invocation.getArgument(1);
            String region = invocation.getArgument(2);
            Iso3166Country country = (Iso3166Country) invocation.getArgument(3);
            OrgEntity entity = new OrgEntity();
            entity.setName(name);
            entity.setCity(city);
            entity.setRegion(region);
            entity.setCountry(country);
            if ("1. Alt Name".equals(name) && "AltCity#1".equals(city) && region == null && Iso3166Country.MX.equals(country)) {
                OrgDisambiguatedEntity od = new OrgDisambiguatedEntity();
                // ringgold_id * 1000
                od.setId(Long.valueOf(1000));
                entity.setOrgDisambiguated(od);
            } else if ("2. Alt Name".equals(name) && "AltCity#2".equals(city) && region == null && Iso3166Country.BR.equals(country)) {
                OrgDisambiguatedEntity od = new OrgDisambiguatedEntity();
                // ringgold_id * 1000
                od.setId(Long.valueOf(2000));
                entity.setOrgDisambiguated(od);
            } else if ("Testing Org".equals(name)) {
            // This is an org not linked to any disambiguated org yet
            } else {
                return null;
            }
            return entity;
        }
    });
}

Example 15 with OrgDisambiguatedExternalIdentifierEntity

use of org.orcid.persistence.jpa.entities.OrgDisambiguatedExternalIdentifierEntity in project ORCID-Source by ORCID.

the class LoadRinggoldDataTest method test_removeAndAddExternalIdentifier.

@Test
public void test_removeAndAddExternalIdentifier() throws URISyntaxException {
    setupInitialMocks();
    Path path = Paths.get(getClass().getClassLoader().getResource("ringgold/test_RemoveAndAddExternalIdentifier/").toURI());
    File testDirectory = path.toFile();
    assertTrue(testDirectory.exists());
    loader.setDirectory(testDirectory);
    loader.execute();
    verify(mockOrgDisambiguatedDao, times(0)).persist(any());
    verify(mockOrgDisambiguatedDao, times(0)).merge(any());
    ArgumentCaptor<OrgDisambiguatedExternalIdentifierEntity> addCaptor = ArgumentCaptor.forClass(OrgDisambiguatedExternalIdentifierEntity.class);
    ArgumentCaptor<Long> removeCaptor = ArgumentCaptor.forClass(Long.class);
    verify(mockOrgDisambiguatedExternalIdentifierDao, times(1)).persist(addCaptor.capture());
    verify(mockOrgDisambiguatedExternalIdentifierDao, times(0)).merge(any());
    verify(mockOrgDisambiguatedExternalIdentifierDao, times(1)).remove(removeCaptor.capture());
    List<OrgDisambiguatedExternalIdentifierEntity> addedList = addCaptor.getAllValues();
    assertEquals(1, addedList.size());
    OrgDisambiguatedExternalIdentifierEntity entity = addedList.get(0);
    assertEquals("9", entity.getIdentifier());
    assertEquals("ISNI", entity.getIdentifierType());
    assertEquals(false, entity.getPreferred());
    assertEquals(Long.valueOf(1000), entity.getOrgDisambiguated().getId());
    List<Long> deletedIds = removeCaptor.getAllValues();
    assertEquals(1, deletedIds.size());
    Long deletedId = deletedIds.get(0);
    assertEquals(Long.valueOf(5), deletedId);
    verify(mockOrgDao, times(0)).persist(any());
    verify(mockOrgDao, times(0)).merge(any());
}