Examples with OrgEntity org.orcid.persistence.jpa.entities.OrgEntity used on opensource projects

Example 6 with OrgEntity

use of org.orcid.persistence.jpa.entities.OrgEntity in project ORCID-Source by ORCID.

the class LoadRinggoldData method generateOrganizations.

private void generateOrganizations(OrgDisambiguatedEntity disambiguatedEntity, List<JsonNode> altNames) {
    Date now = new Date();
    altNames.forEach(altName -> {
        String name = altName.get("name").asText();
        LOGGER.info("Processing organization {} for {}", name, disambiguatedEntity.getId());
        String city = altName.get("city").asText();
        Iso3166Country country = Iso3166Country.fromValue(altName.get("country").asText());
        // Not happy with line below.  Can steal from other ORG ID types.
        OrgEntity existingOrg = orgDao.findByNameCityRegionAndCountry(name, city, null, country);
        if (existingOrg != null) {
            if (existingOrg.getOrgDisambiguated() == null) {
                existingOrg.setOrgDisambiguated(disambiguatedEntity);
                existingOrg.setLastModified(now);
                orgDao.merge(existingOrg);
                numUpdatedOrgs++;
            }
        } else {
            OrgEntity newOrg = new OrgEntity();
            newOrg.setDateCreated(now);
            newOrg.setLastModified(now);
            newOrg.setCity(city);
            newOrg.setCountry(country);
            newOrg.setName(name);
            newOrg.setOrgDisambiguated(disambiguatedEntity);
            orgDao.persist(newOrg);
            numAddedOrgs++;
        }
    });
}

Example 7 with OrgEntity

use of org.orcid.persistence.jpa.entities.OrgEntity in project ORCID-Source by ORCID.

the class JSONPeerReviewWorkExternalIdentifierConverterV2Test method getPeerReviewEntity.

private PeerReviewEntity getPeerReviewEntity() {
    OrgEntity orgEntity = new OrgEntity();
    orgEntity.setCity("org:city");
    orgEntity.setCountry(org.orcid.jaxb.model.message.Iso3166Country.US);
    orgEntity.setName("org:name");
    orgEntity.setRegion("org:region");
    orgEntity.setUrl("org:url");
    orgEntity.setSource(new SourceEntity("APP-000000001"));
    PeerReviewEntity result = new PeerReviewEntity();
    result.setOrg(orgEntity);
    result.setCompletionDate(new CompletionDateEntity(2015, 1, 1));
    result.setExternalIdentifiersJson("{\"workExternalIdentifier\":[{\"relationship\":\"SELF\",\"url\":{\"value\":\"http://orcid.org\"},\"workExternalIdentifierType\":\"SOURCE_WORK_ID\",\"workExternalIdentifierId\":{\"content\":\"peer-review:external-identifier-id\"}}]}");
    result.setProfile(new ProfileEntity("0000-0001-0002-0003"));
    result.setRole(Role.MEMBER);
    result.setType(PeerReviewType.EVALUATION);
    result.setUrl("peer-review:url");
    result.setSubjectExternalIdentifiersJson("{\"relationship\":\"SELF\",\"url\":{\"value\":\"http://orcid.org\"},\"workExternalIdentifierType\":\"SOURCE_WORK_ID\",\"workExternalIdentifierId\":{\"content\":\"peer-review:subject-external-identifier-id\"}}");
    result.setSubjectContainerName("peer-review:subject-container-name");
    result.setSubjectName("peer-review:subject-name");
    result.setSubjectTranslatedName("peer-review:subject-translated-name");
    result.setSubjectTranslatedNameLanguageCode("en");
    result.setSubjectUrl("peer-review:subject-url");
    result.setSubjectType(WorkType.BOOK_REVIEW);
    result.setVisibility(Visibility.PRIVATE);
    result.setClientSourceId("APP-000000001");
    result.setGroupId("orcid-generated:12345");
    result.setId(12345L);
    return result;
}

Example 8 with OrgEntity

use of org.orcid.persistence.jpa.entities.OrgEntity in project ORCID-Source by ORCID.

the class Jaxb2JpaAdapterImpl method getOrgAffiliationRelationEntity.

private OrgAffiliationRelationEntity getOrgAffiliationRelationEntity(Affiliation affiliation, OrgAffiliationRelationEntity exisitingOrgAffiliationEntity) {
    if (affiliation != null) {
        // Get the org
        OrgEntity orgEntity = getOrgEntity(affiliation);
        OrgAffiliationRelationEntity orgRelationEntity = null;
        if (exisitingOrgAffiliationEntity == null) {
            String putCode = affiliation.getPutCode();
            if (StringUtils.isNotBlank(putCode) && !"-1".equals(putCode)) {
                throw new IllegalArgumentException("Invalid put-code was supplied for an affiliation: " + putCode);
            }
            orgRelationEntity = new OrgAffiliationRelationEntity();
            setSource(sourceManager.retrieveSourceEntity(), orgRelationEntity);
        } else {
            orgRelationEntity = exisitingOrgAffiliationEntity;
            orgRelationEntity.clean();
        }
        FuzzyDate startDate = affiliation.getStartDate();
        FuzzyDate endDate = affiliation.getEndDate();
        if (affiliation.getType() != null) {
            orgRelationEntity.setAffiliationType(org.orcid.jaxb.model.v3.dev1.record.AffiliationType.fromValue(affiliation.getType().value()));
        }
        if (affiliation.getVisibility() != null) {
            orgRelationEntity.setVisibility(org.orcid.jaxb.model.common_v2.Visibility.fromValue(affiliation.getVisibility().value()));
        } else {
            orgRelationEntity.setVisibility(org.orcid.jaxb.model.common_v2.Visibility.PRIVATE);
        }
        orgRelationEntity.setDepartment(affiliation.getDepartmentName());
        orgRelationEntity.setEndDate(endDate != null ? new EndDateEntity(endDate) : null);
        orgRelationEntity.setOrg(orgEntity);
        orgRelationEntity.setTitle(affiliation.getRoleTitle());
        orgRelationEntity.setStartDate(startDate != null ? new StartDateEntity(startDate) : null);
        if (affiliation.getCreatedDate() != null && affiliation.getCreatedDate().getValue() != null)
            orgRelationEntity.setDateCreated(affiliation.getCreatedDate().getValue().toGregorianCalendar().getTime());
        if (affiliation.getLastModifiedDate() != null && affiliation.getLastModifiedDate().getValue() != null)
            orgRelationEntity.setLastModified(affiliation.getLastModifiedDate().getValue().toGregorianCalendar().getTime());
        return orgRelationEntity;
    }
    return null;
}

Example 9 with OrgEntity

use of org.orcid.persistence.jpa.entities.OrgEntity in project ORCID-Source by ORCID.

the class AffiliationsManagerImpl method updateAffiliation.

public Affiliation updateAffiliation(String orcid, Affiliation affiliation, boolean isApiRequest, AffiliationType type) {
    OrgAffiliationRelationEntity entity = orgAffiliationRelationDao.getOrgAffiliationRelation(orcid, affiliation.getPutCode());
    SourceEntity sourceEntity = sourceManager.retrieveSourceEntity();
    // Save the original source
    String existingSourceId = entity.getSourceId();
    String existingClientSourceId = entity.getClientSourceId();
    org.orcid.jaxb.model.common_v2.Visibility originalVisibility = entity.getVisibility();
    orcidSecurityManager.checkSource(entity);
    activityValidator.validateAffiliation(affiliation, sourceEntity, false, isApiRequest, org.orcid.jaxb.model.v3.dev1.common.Visibility.fromValue(originalVisibility.value()));
    if (isApiRequest) {
        checkAffiliationExternalIDsForDuplicates(orcid, affiliation, sourceEntity);
    }
    switch(type) {
        case DISTINCTION:
            jpaJaxbDistinctionAdapter.toOrgAffiliationRelationEntity((Distinction) affiliation, entity);
            break;
        case EDUCATION:
            jpaJaxbEducationAdapter.toOrgAffiliationRelationEntity((Education) affiliation, entity);
            break;
        case EMPLOYMENT:
            jpaJaxbEmploymentAdapter.toOrgAffiliationRelationEntity((Employment) affiliation, entity);
            break;
        case INVITED_POSITION:
            jpaJaxbInvitedPositionAdapter.toOrgAffiliationRelationEntity((InvitedPosition) affiliation, entity);
            break;
        case MEMBERSHIP:
            jpaJaxbMembershipAdapter.toOrgAffiliationRelationEntity((Membership) affiliation, entity);
            break;
        case QUALIFICATION:
            jpaJaxbQualificationAdapter.toOrgAffiliationRelationEntity((Qualification) affiliation, entity);
            break;
        case SERVICE:
            jpaJaxbServiceAdapter.toOrgAffiliationRelationEntity((Service) affiliation, entity);
            break;
    }
    entity.setVisibility(originalVisibility);
    // Be sure it doesn't overwrite the source
    entity.setSourceId(existingSourceId);
    entity.setClientSourceId(existingClientSourceId);
    // Updates the give organization with the latest organization from
    // database, or, create a new one
    OrgEntity updatedOrganization = orgManager.getOrgEntity(affiliation);
    entity.setOrg(updatedOrganization);
    entity.setAffiliationType(type);
    entity = orgAffiliationRelationDao.merge(entity);
    orgAffiliationRelationDao.flush();
    Affiliation result = null;
    switch(type) {
        case DISTINCTION:
            notificationManager.sendAmendEmail(orcid, AmendedSection.DISTINCTION, createItemList(entity));
            result = jpaJaxbDistinctionAdapter.toDistinction(entity);
            break;
        case EDUCATION:
            notificationManager.sendAmendEmail(orcid, AmendedSection.EDUCATION, createItemList(entity));
            result = jpaJaxbEducationAdapter.toEducation(entity);
            break;
        case EMPLOYMENT:
            notificationManager.sendAmendEmail(orcid, AmendedSection.EMPLOYMENT, createItemList(entity));
            result = jpaJaxbEmploymentAdapter.toEmployment(entity);
            break;
        case INVITED_POSITION:
            notificationManager.sendAmendEmail(orcid, AmendedSection.INVITED_POSITION, createItemList(entity));
            result = jpaJaxbInvitedPositionAdapter.toInvitedPosition(entity);
            break;
        case MEMBERSHIP:
            notificationManager.sendAmendEmail(orcid, AmendedSection.MEMBERSHIP, createItemList(entity));
            result = jpaJaxbMembershipAdapter.toMembership(entity);
            break;
        case QUALIFICATION:
            notificationManager.sendAmendEmail(orcid, AmendedSection.QUALIFICATION, createItemList(entity));
            result = jpaJaxbQualificationAdapter.toQualification(entity);
            break;
        case SERVICE:
            notificationManager.sendAmendEmail(orcid, AmendedSection.SERVICE, createItemList(entity));
            result = jpaJaxbServiceAdapter.toService(entity);
            break;
    }
    return result;
}

Example 10 with OrgEntity

use of org.orcid.persistence.jpa.entities.OrgEntity in project ORCID-Source by ORCID.

the class OrgManagerImpl method getOrgEntity.

@Override
public OrgEntity getOrgEntity(OrganizationHolder holder) {
    if (holder == null)
        return null;
    OrgEntity orgEntity = new OrgEntity();
    org.orcid.jaxb.model.v3.dev1.common.Organization organization = holder.getOrganization();
    orgEntity.setName(organization.getName());
    org.orcid.jaxb.model.v3.dev1.common.OrganizationAddress address = organization.getAddress();
    orgEntity.setCity(address.getCity());
    orgEntity.setRegion(address.getRegion());
    orgEntity.setCountry(Iso3166Country.fromValue(address.getCountry().value()));
    if (organization.getDisambiguatedOrganization() != null && organization.getDisambiguatedOrganization().getDisambiguatedOrganizationIdentifier() != null) {
        // if disambiguated org is present (must be for v3 API, but not UI) it must be valid
        OrgDisambiguatedEntity disambiguatedOrg = orgDisambiguatedDao.findBySourceIdAndSourceType(organization.getDisambiguatedOrganization().getDisambiguatedOrganizationIdentifier(), organization.getDisambiguatedOrganization().getDisambiguationSource());
        if (disambiguatedOrg == null) {
            throw new InvalidDisambiguatedOrgException();
        }
        orgEntity.setOrgDisambiguated(disambiguatedOrg);
    }
    return matchOrCreateOrg(orgEntity);
}