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Example 1 with ColumnFilter

use of org.pmiops.workbench.model.ColumnFilter in project workbench by all-of-us.

the class CohortMaterializationServiceTest method testMaterializeCohortPersonFieldSetPersonIdWithStringLessThanNullNonMatch.

@Test
public void testMaterializeCohortPersonFieldSetPersonIdWithStringLessThanNullNonMatch() {
    TableQuery tableQuery = new TableQuery();
    tableQuery.setTableName("person");
    tableQuery.setColumns(ImmutableList.of("person_id"));
    ColumnFilter filter = new ColumnFilter();
    filter.setColumnName("ethnicity_source_value");
    filter.setOperator(Operator.LESS_THAN);
    filter.setValue("esv");
    tableQuery.addFiltersItem(ImmutableList.of(filter));
    FieldSet fieldSet = new FieldSet();
    fieldSet.setTableQuery(tableQuery);
    MaterializeCohortResponse response = cohortMaterializationService.materializeCohort(null, SearchRequests.allGenders(), makeRequest(fieldSet, 1000));
    assertPersonIds(response);
    assertThat(response.getNextPageToken()).isNull();
}
Also used : FieldSet(org.pmiops.workbench.model.FieldSet) TableQuery(org.pmiops.workbench.model.TableQuery) ColumnFilter(org.pmiops.workbench.model.ColumnFilter) MaterializeCohortResponse(org.pmiops.workbench.model.MaterializeCohortResponse) BigQueryBaseTest(org.pmiops.workbench.api.BigQueryBaseTest) Test(org.junit.Test)

Example 2 with ColumnFilter

use of org.pmiops.workbench.model.ColumnFilter in project workbench by all-of-us.

the class CohortMaterializationServiceTest method testMaterializeCohortPersonFieldSetPersonIdWithNumberGreaterThanFilter.

@Test
public void testMaterializeCohortPersonFieldSetPersonIdWithNumberGreaterThanFilter() {
    TableQuery tableQuery = new TableQuery();
    tableQuery.setTableName("person");
    tableQuery.setColumns(ImmutableList.of("person_id"));
    ColumnFilter filter = new ColumnFilter();
    filter.setColumnName("person_id");
    filter.setOperator(Operator.GREATER_THAN);
    filter.setValueNumber(new BigDecimal(2L));
    tableQuery.addFiltersItem(ImmutableList.of(filter));
    FieldSet fieldSet = new FieldSet();
    fieldSet.setTableQuery(tableQuery);
    MaterializeCohortResponse response = cohortMaterializationService.materializeCohort(null, SearchRequests.allGenders(), makeRequest(fieldSet, 1000));
    assertPersonIds(response, 102246L);
    assertThat(response.getNextPageToken()).isNull();
}
Also used : FieldSet(org.pmiops.workbench.model.FieldSet) TableQuery(org.pmiops.workbench.model.TableQuery) ColumnFilter(org.pmiops.workbench.model.ColumnFilter) BigDecimal(java.math.BigDecimal) MaterializeCohortResponse(org.pmiops.workbench.model.MaterializeCohortResponse) BigQueryBaseTest(org.pmiops.workbench.api.BigQueryBaseTest) Test(org.junit.Test)

Example 3 with ColumnFilter

use of org.pmiops.workbench.model.ColumnFilter in project workbench by all-of-us.

the class CohortMaterializationServiceTest method testMaterializeCohortPersonFieldSetPersonIdWithNumberLessThanFilter.

@Test
public void testMaterializeCohortPersonFieldSetPersonIdWithNumberLessThanFilter() {
    TableQuery tableQuery = new TableQuery();
    tableQuery.setTableName("person");
    tableQuery.setColumns(ImmutableList.of("person_id"));
    ColumnFilter filter = new ColumnFilter();
    filter.setColumnName("person_id");
    filter.setOperator(Operator.LESS_THAN);
    filter.setValueNumber(new BigDecimal(2L));
    tableQuery.addFiltersItem(ImmutableList.of(filter));
    FieldSet fieldSet = new FieldSet();
    fieldSet.setTableQuery(tableQuery);
    MaterializeCohortResponse response = cohortMaterializationService.materializeCohort(null, SearchRequests.allGenders(), makeRequest(fieldSet, 1000));
    assertPersonIds(response, 1L);
    assertThat(response.getNextPageToken()).isNull();
}
Also used : FieldSet(org.pmiops.workbench.model.FieldSet) TableQuery(org.pmiops.workbench.model.TableQuery) ColumnFilter(org.pmiops.workbench.model.ColumnFilter) BigDecimal(java.math.BigDecimal) MaterializeCohortResponse(org.pmiops.workbench.model.MaterializeCohortResponse) BigQueryBaseTest(org.pmiops.workbench.api.BigQueryBaseTest) Test(org.junit.Test)

Example 4 with ColumnFilter

use of org.pmiops.workbench.model.ColumnFilter in project workbench by all-of-us.

the class CohortMaterializationServiceTest method testMaterializeCohortObservationFilterObservationDateLessThan.

@Test
public void testMaterializeCohortObservationFilterObservationDateLessThan() {
    TableQuery tableQuery = new TableQuery();
    tableQuery.setTableName("observation");
    tableQuery.setColumns(ImmutableList.of("observation_id"));
    ColumnFilter columnFilter = new ColumnFilter();
    columnFilter.setColumnName("observation_date");
    columnFilter.setOperator(Operator.LESS_THAN);
    columnFilter.setValueDate("2009-12-04");
    tableQuery.addFiltersItem(ImmutableList.of(columnFilter));
    FieldSet fieldSet = new FieldSet();
    fieldSet.setTableQuery(tableQuery);
    MaterializeCohortResponse response = cohortMaterializationService.materializeCohort(null, SearchRequests.males(), makeRequest(fieldSet, 1000));
    assertResults(response, ImmutableMap.of("observation_id", 5L));
    assertThat(response.getNextPageToken()).isNull();
}
Also used : FieldSet(org.pmiops.workbench.model.FieldSet) TableQuery(org.pmiops.workbench.model.TableQuery) ColumnFilter(org.pmiops.workbench.model.ColumnFilter) MaterializeCohortResponse(org.pmiops.workbench.model.MaterializeCohortResponse) BigQueryBaseTest(org.pmiops.workbench.api.BigQueryBaseTest) Test(org.junit.Test)

Example 5 with ColumnFilter

use of org.pmiops.workbench.model.ColumnFilter in project workbench by all-of-us.

the class CohortMaterializationServiceTest method testMaterializeCohortObservationFilterObservationDateLessThanOrEqualTo.

@Test
public void testMaterializeCohortObservationFilterObservationDateLessThanOrEqualTo() {
    TableQuery tableQuery = new TableQuery();
    tableQuery.setTableName("observation");
    tableQuery.setColumns(ImmutableList.of("observation_id"));
    ColumnFilter columnFilter = new ColumnFilter();
    columnFilter.setColumnName("observation_date");
    columnFilter.setOperator(Operator.LESS_THAN_OR_EQUAL_TO);
    columnFilter.setValueDate("2009-12-03");
    tableQuery.addFiltersItem(ImmutableList.of(columnFilter));
    FieldSet fieldSet = new FieldSet();
    fieldSet.setTableQuery(tableQuery);
    MaterializeCohortResponse response = cohortMaterializationService.materializeCohort(null, SearchRequests.males(), makeRequest(fieldSet, 1000));
    assertResults(response, ImmutableMap.of("observation_id", 5L));
    assertThat(response.getNextPageToken()).isNull();
}
Also used : FieldSet(org.pmiops.workbench.model.FieldSet) TableQuery(org.pmiops.workbench.model.TableQuery) ColumnFilter(org.pmiops.workbench.model.ColumnFilter) MaterializeCohortResponse(org.pmiops.workbench.model.MaterializeCohortResponse) BigQueryBaseTest(org.pmiops.workbench.api.BigQueryBaseTest) Test(org.junit.Test)

Aggregations

ColumnFilter (org.pmiops.workbench.model.ColumnFilter)31 TableQuery (org.pmiops.workbench.model.TableQuery)30 Test (org.junit.Test)29 BigQueryBaseTest (org.pmiops.workbench.api.BigQueryBaseTest)29 FieldSet (org.pmiops.workbench.model.FieldSet)29 MaterializeCohortResponse (org.pmiops.workbench.model.MaterializeCohortResponse)29 BigDecimal (java.math.BigDecimal)8 BadRequestException (org.pmiops.workbench.exceptions.BadRequestException)2 QueryParameterValue (com.google.cloud.bigquery.QueryParameterValue)1 HashMap (java.util.HashMap)1 List (java.util.List)1