Examples with FieldSet org.pmiops.workbench.model.FieldSet used on opensource projects

Example 1 with FieldSet

use of org.pmiops.workbench.model.FieldSet in project workbench by all-of-us.

the class CohortMaterializationServiceTest method testMaterializeCohortPersonFieldSetPersonIdWithStringLessThanNullNonMatch.

@Test
public void testMaterializeCohortPersonFieldSetPersonIdWithStringLessThanNullNonMatch() {
    TableQuery tableQuery = new TableQuery();
    tableQuery.setTableName("person");
    tableQuery.setColumns(ImmutableList.of("person_id"));
    ColumnFilter filter = new ColumnFilter();
    filter.setColumnName("ethnicity_source_value");
    filter.setOperator(Operator.LESS_THAN);
    filter.setValue("esv");
    tableQuery.addFiltersItem(ImmutableList.of(filter));
    FieldSet fieldSet = new FieldSet();
    fieldSet.setTableQuery(tableQuery);
    MaterializeCohortResponse response = cohortMaterializationService.materializeCohort(null, SearchRequests.allGenders(), makeRequest(fieldSet, 1000));
    assertPersonIds(response);
    assertThat(response.getNextPageToken()).isNull();
}

Example 2 with FieldSet

use of org.pmiops.workbench.model.FieldSet in project workbench by all-of-us.

the class CohortMaterializationServiceTest method testMaterializeCohortPersonFieldSetPersonIdWithNumberGreaterThanFilter.

@Test
public void testMaterializeCohortPersonFieldSetPersonIdWithNumberGreaterThanFilter() {
    TableQuery tableQuery = new TableQuery();
    tableQuery.setTableName("person");
    tableQuery.setColumns(ImmutableList.of("person_id"));
    ColumnFilter filter = new ColumnFilter();
    filter.setColumnName("person_id");
    filter.setOperator(Operator.GREATER_THAN);
    filter.setValueNumber(new BigDecimal(2L));
    tableQuery.addFiltersItem(ImmutableList.of(filter));
    FieldSet fieldSet = new FieldSet();
    fieldSet.setTableQuery(tableQuery);
    MaterializeCohortResponse response = cohortMaterializationService.materializeCohort(null, SearchRequests.allGenders(), makeRequest(fieldSet, 1000));
    assertPersonIds(response, 102246L);
    assertThat(response.getNextPageToken()).isNull();
}

Example 3 with FieldSet

use of org.pmiops.workbench.model.FieldSet in project workbench by all-of-us.

the class CohortMaterializationServiceTest method testMaterializeCohortObservationPersonNotFound.

@Test
public void testMaterializeCohortObservationPersonNotFound() {
    TableQuery tableQuery = new TableQuery();
    tableQuery.setTableName("observation");
    FieldSet fieldSet = new FieldSet();
    fieldSet.setTableQuery(tableQuery);
    MaterializeCohortResponse response = cohortMaterializationService.materializeCohort(null, SearchRequests.females(), makeRequest(fieldSet, 1000));
    assertResults(response);
    assertThat(response.getNextPageToken()).isNull();
}

Example 4 with FieldSet

use of org.pmiops.workbench.model.FieldSet in project workbench by all-of-us.

the class CohortMaterializationServiceTest method testMaterializeCohortPersonFieldSetOrderByGenderConceptIdDesc.

@Test
public void testMaterializeCohortPersonFieldSetOrderByGenderConceptIdDesc() {
    TableQuery tableQuery = new TableQuery();
    tableQuery.setTableName("person");
    tableQuery.setColumns(ImmutableList.of("person_id", "gender_concept_id"));
    tableQuery.setOrderBy(ImmutableList.of("gender_concept_id DESC"));
    FieldSet fieldSet = new FieldSet();
    fieldSet.setTableQuery(tableQuery);
    MaterializeCohortResponse response = cohortMaterializationService.materializeCohort(null, SearchRequests.allGenders(), makeRequest(fieldSet, 1000));
    ImmutableMap<String, Object> p1Map = ImmutableMap.of("person_id", 1L, "gender_concept_id", 8507L);
    ImmutableMap<String, Object> p2Map = ImmutableMap.of("person_id", 2L, "gender_concept_id", 2L);
    ImmutableMap<String, Object> p3Map = ImmutableMap.of("person_id", 102246L, "gender_concept_id", 8532L);
    assertResults(response, p3Map, p1Map, p2Map);
    assertThat(response.getNextPageToken()).isNull();
}

Example 5 with FieldSet

use of org.pmiops.workbench.model.FieldSet in project workbench by all-of-us.

the class CohortMaterializationServiceTest method testMaterializeCohortPersonFieldSetPersonIdWithNumberLessThanFilter.

@Test
public void testMaterializeCohortPersonFieldSetPersonIdWithNumberLessThanFilter() {
    TableQuery tableQuery = new TableQuery();
    tableQuery.setTableName("person");
    tableQuery.setColumns(ImmutableList.of("person_id"));
    ColumnFilter filter = new ColumnFilter();
    filter.setColumnName("person_id");
    filter.setOperator(Operator.LESS_THAN);
    filter.setValueNumber(new BigDecimal(2L));
    tableQuery.addFiltersItem(ImmutableList.of(filter));
    FieldSet fieldSet = new FieldSet();
    fieldSet.setTableQuery(tableQuery);
    MaterializeCohortResponse response = cohortMaterializationService.materializeCohort(null, SearchRequests.allGenders(), makeRequest(fieldSet, 1000));
    assertPersonIds(response, 1L);
    assertThat(response.getNextPageToken()).isNull();
}