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Example 11 with TableQuery

use of org.pmiops.workbench.model.TableQuery in project workbench by all-of-us.

the class CohortMaterializationServiceTest method testMaterializeCohortPersonFieldSetPersonIdWithStringsFilter.

@Test
public void testMaterializeCohortPersonFieldSetPersonIdWithStringsFilter() {
    TableQuery tableQuery = new TableQuery();
    tableQuery.setTableName("person");
    tableQuery.setColumns(ImmutableList.of("person_id"));
    ColumnFilter filter = new ColumnFilter();
    filter.setColumnName("person_source_value");
    filter.setOperator(Operator.IN);
    filter.setValues(ImmutableList.of("foobar", "psv"));
    tableQuery.addFiltersItem(ImmutableList.of(filter));
    FieldSet fieldSet = new FieldSet();
    fieldSet.setTableQuery(tableQuery);
    MaterializeCohortResponse response = cohortMaterializationService.materializeCohort(null, SearchRequests.allGenders(), makeRequest(fieldSet, 1000));
    assertPersonIds(response, 1L, 2L, 102246L);
    assertThat(response.getNextPageToken()).isNull();
}
Also used : FieldSet(org.pmiops.workbench.model.FieldSet) TableQuery(org.pmiops.workbench.model.TableQuery) ColumnFilter(org.pmiops.workbench.model.ColumnFilter) MaterializeCohortResponse(org.pmiops.workbench.model.MaterializeCohortResponse) BigQueryBaseTest(org.pmiops.workbench.api.BigQueryBaseTest) Test(org.junit.Test)

Example 12 with TableQuery

use of org.pmiops.workbench.model.TableQuery in project workbench by all-of-us.

the class CohortMaterializationServiceTest method testMaterializeCohortPersonFieldSetPersonIdWithStringLikeFilter.

@Test
public void testMaterializeCohortPersonFieldSetPersonIdWithStringLikeFilter() {
    TableQuery tableQuery = new TableQuery();
    tableQuery.setTableName("person");
    tableQuery.setColumns(ImmutableList.of("person_id"));
    ColumnFilter filter = new ColumnFilter();
    filter.setColumnName("person_source_value");
    filter.setOperator(Operator.LIKE);
    filter.setValue("p%");
    tableQuery.addFiltersItem(ImmutableList.of(filter));
    FieldSet fieldSet = new FieldSet();
    fieldSet.setTableQuery(tableQuery);
    MaterializeCohortResponse response = cohortMaterializationService.materializeCohort(null, SearchRequests.allGenders(), makeRequest(fieldSet, 1000));
    assertPersonIds(response, 1L, 2L, 102246L);
    assertThat(response.getNextPageToken()).isNull();
}
Also used : FieldSet(org.pmiops.workbench.model.FieldSet) TableQuery(org.pmiops.workbench.model.TableQuery) ColumnFilter(org.pmiops.workbench.model.ColumnFilter) MaterializeCohortResponse(org.pmiops.workbench.model.MaterializeCohortResponse) BigQueryBaseTest(org.pmiops.workbench.api.BigQueryBaseTest) Test(org.junit.Test)

Example 13 with TableQuery

use of org.pmiops.workbench.model.TableQuery in project workbench by all-of-us.

the class CohortMaterializationServiceTest method testMaterializeCohortObservationFilterObservationDateEqual.

@Test
public void testMaterializeCohortObservationFilterObservationDateEqual() {
    TableQuery tableQuery = new TableQuery();
    tableQuery.setTableName("observation");
    tableQuery.setColumns(ImmutableList.of("observation_id"));
    ColumnFilter columnFilter = new ColumnFilter();
    columnFilter.setColumnName("observation_date");
    columnFilter.setValueDate("2009-12-03");
    tableQuery.addFiltersItem(ImmutableList.of(columnFilter));
    FieldSet fieldSet = new FieldSet();
    fieldSet.setTableQuery(tableQuery);
    MaterializeCohortResponse response = cohortMaterializationService.materializeCohort(null, SearchRequests.males(), makeRequest(fieldSet, 1000));
    assertResults(response, ImmutableMap.of("observation_id", 5L));
    assertThat(response.getNextPageToken()).isNull();
}
Also used : FieldSet(org.pmiops.workbench.model.FieldSet) TableQuery(org.pmiops.workbench.model.TableQuery) ColumnFilter(org.pmiops.workbench.model.ColumnFilter) MaterializeCohortResponse(org.pmiops.workbench.model.MaterializeCohortResponse) BigQueryBaseTest(org.pmiops.workbench.api.BigQueryBaseTest) Test(org.junit.Test)

Example 14 with TableQuery

use of org.pmiops.workbench.model.TableQuery in project workbench by all-of-us.

the class CohortMaterializationServiceTest method testMaterializeCohortObservationFilterObservationDateGreaterThan.

@Test
public void testMaterializeCohortObservationFilterObservationDateGreaterThan() {
    TableQuery tableQuery = new TableQuery();
    tableQuery.setTableName("observation");
    tableQuery.setColumns(ImmutableList.of("observation_id"));
    ColumnFilter columnFilter = new ColumnFilter();
    columnFilter.setColumnName("observation_date");
    columnFilter.setOperator(Operator.GREATER_THAN);
    columnFilter.setValueDate("2009-12-02");
    tableQuery.addFiltersItem(ImmutableList.of(columnFilter));
    FieldSet fieldSet = new FieldSet();
    fieldSet.setTableQuery(tableQuery);
    MaterializeCohortResponse response = cohortMaterializationService.materializeCohort(null, SearchRequests.males(), makeRequest(fieldSet, 1000));
    assertResults(response, ImmutableMap.of("observation_id", 5L));
    assertThat(response.getNextPageToken()).isNull();
}
Also used : FieldSet(org.pmiops.workbench.model.FieldSet) TableQuery(org.pmiops.workbench.model.TableQuery) ColumnFilter(org.pmiops.workbench.model.ColumnFilter) MaterializeCohortResponse(org.pmiops.workbench.model.MaterializeCohortResponse) BigQueryBaseTest(org.pmiops.workbench.api.BigQueryBaseTest) Test(org.junit.Test)

Example 15 with TableQuery

use of org.pmiops.workbench.model.TableQuery in project workbench by all-of-us.

the class CohortMaterializationServiceTest method testMaterializeCohortPersonFieldSetPersonIdWithStringFilter.

@Test
public void testMaterializeCohortPersonFieldSetPersonIdWithStringFilter() {
    TableQuery tableQuery = new TableQuery();
    tableQuery.setTableName("person");
    tableQuery.setColumns(ImmutableList.of("person_id"));
    ColumnFilter filter = new ColumnFilter();
    filter.setColumnName("person_source_value");
    filter.setValue("psv");
    tableQuery.addFiltersItem(ImmutableList.of(filter));
    FieldSet fieldSet = new FieldSet();
    fieldSet.setTableQuery(tableQuery);
    MaterializeCohortResponse response = cohortMaterializationService.materializeCohort(null, SearchRequests.allGenders(), makeRequest(fieldSet, 1000));
    assertPersonIds(response, 1L, 2L, 102246L);
    assertThat(response.getNextPageToken()).isNull();
}
Also used : FieldSet(org.pmiops.workbench.model.FieldSet) TableQuery(org.pmiops.workbench.model.TableQuery) ColumnFilter(org.pmiops.workbench.model.ColumnFilter) MaterializeCohortResponse(org.pmiops.workbench.model.MaterializeCohortResponse) BigQueryBaseTest(org.pmiops.workbench.api.BigQueryBaseTest) Test(org.junit.Test)

Aggregations

TableQuery (org.pmiops.workbench.model.TableQuery)38 FieldSet (org.pmiops.workbench.model.FieldSet)36 Test (org.junit.Test)35 BigQueryBaseTest (org.pmiops.workbench.api.BigQueryBaseTest)35 MaterializeCohortResponse (org.pmiops.workbench.model.MaterializeCohortResponse)35 ColumnFilter (org.pmiops.workbench.model.ColumnFilter)31 BigDecimal (java.math.BigDecimal)9 BadRequestException (org.pmiops.workbench.exceptions.BadRequestException)3 QueryParameterValue (com.google.cloud.bigquery.QueryParameterValue)2 HashMap (java.util.HashMap)2 List (java.util.List)2 ColumnConfig (org.pmiops.workbench.config.CdrBigQuerySchemaConfig.ColumnConfig)2 FieldValue (com.google.cloud.bigquery.FieldValue)1 QueryJobConfiguration (com.google.cloud.bigquery.QueryJobConfiguration)1 Joiner (com.google.common.base.Joiner)1 Strings (com.google.common.base.Strings)1 ParseException (java.text.ParseException)1 SimpleDateFormat (java.text.SimpleDateFormat)1 Map (java.util.Map)1 Collectors (java.util.stream.Collectors)1