Examples with OWLOntologyCreationException org.semanticweb.owlapi.model.OWLOntologyCreationException used on opensource projects

Example 51 with OWLOntologyCreationException

use of org.semanticweb.owlapi.model.OWLOntologyCreationException in project stanbol by apache.

the class ODPRegistryCacheManager method getOntologyInputSource.

public static synchronized OWLOntologyDocumentSource getOntologyInputSource(URI uri) throws ODPRegistryCacheException, URIUnresolvableException {
    if (getUnresolvedURIs().contains(uri))
        throw new URIUnresolvableException();
    if (uris.containsKey(uri)) {
        File f = uris.get(uri);
        FileDocumentSource fds = new FileDocumentSource(f);
        return fds;
    } else {
        try {
            retrieveRemoteResource(uri);
            return getOntologyInputSource(uri);
        } catch (UnknownOWLOntologyException e) {
            throw new ODPRegistryCacheException(e);
        } catch (OWLOntologyCreationException e) {
            throw new ODPRegistryCacheException(e);
        } catch (OWLOntologyStorageException e) {
            throw new ODPRegistryCacheException(e);
        }
    }
}

Example 52 with OWLOntologyCreationException

use of org.semanticweb.owlapi.model.OWLOntologyCreationException in project stanbol by apache.

the class AbstractOntologyCollectorImpl method addOntology.

@Override
public synchronized OWLOntologyID addOntology(OntologyInputSource<?> ontologySource) throws UnmodifiableOntologyCollectorException {
    // Check for error conditions.
    if (locked)
        throw new UnmodifiableOntologyCollectorException(this);
    if (ontologySource == null)
        throw new IllegalArgumentException("Ontology source cannot be null.");
    log.debug("Adding ontology to collector {}", getID());
    OWLOntologyID key = null;
    if (ontologySource.hasRootOntology()) {
        long before = System.currentTimeMillis();
        Object o = ontologySource.getRootOntology();
        // Check the origin anyhow, as it may be useful for setting aliases with physical locations etc.
        if (ontologySource.hasOrigin())
            key = ontologyProvider.loadInStore(o, false, ontologySource.getOrigin());
        else
            key = ontologyProvider.loadInStore(o, false);
        if (key != null) {
            managedOntologies.add(key);
            // Note that imported ontologies are not considered as managed! TODO should we change this?
            log.info("Add ontology completed in {} ms.", (System.currentTimeMillis() - before));
            // Fire the event
            fireOntologyAdded(key);
        }
    } else if (ontologySource.hasOrigin()) {
        // Just the origin : see if it is satisfiable
        log.debug("Checking origin satisfiability...");
        Origin<?> origin = ontologySource.getOrigin();
        Object ref = origin.getReference();
        log.debug("Origin wraps a {}", ref.getClass().getCanonicalName());
        if (ref instanceof org.semanticweb.owlapi.model.IRI)
            try {
                log.debug("Deferring addition to physical IRI {} (if available).", ref);
                key = addOntology(new RootOntologySource((org.semanticweb.owlapi.model.IRI) ref));
            } catch (OWLOntologyCreationException e) {
                throw new RuntimeException(e);
            }
        else if (ref instanceof IRI) {
            log.debug("Deferring addition to stored Clerezza graph {} (if available).", ref);
            key = addOntology(new GraphSource((IRI) ref));
        } else if (ref instanceof OWLOntologyID) {
            OWLOntologyID idref = (OWLOntologyID) ref;
            log.debug("Deferring addition to stored ontology with public key {} (if available).", ref);
            if (!ontologyProvider.hasOntology(idref))
                throw new MissingOntologyException(this, idref);
            key = idref;
            if (managedOntologies.add(idref))
                fireOntologyAdded(idref);
        } else
            throw new IllegalArgumentException("Invalid origin " + origin);
    } else
        throw new IllegalArgumentException("Ontology source must provide either an ontology object, or a way to reference one (i.e. an origin).");
    log.info("Public key : {}", key);
    return key;
}

Example 53 with OWLOntologyCreationException

use of org.semanticweb.owlapi.model.OWLOntologyCreationException in project stanbol by apache.

the class RuleListWriter method writeTo.

@Override
public void writeTo(RuleList ruleList, Class<?> arg1, Type arg2, Annotation[] arg3, MediaType mediaType, MultivaluedMap<String, Object> arg5, OutputStream out) throws IOException, WebApplicationException {
    Logger log = LoggerFactory.getLogger(getClass());
    log.debug("Rendering the list of recipes.");
    OWLOntologyManager manager = OWLManager.createOWLOntologyManager();
    OWLDataFactory factory = OWLManager.getOWLDataFactory();
    OWLOntology ontology;
    try {
        ontology = manager.createOntology();
        String recipeClassURI = Symbols.Recipe.toString().replace("<", "").replace(">", "");
        IRI recipeClassIRI = IRI.create(recipeClassURI);
        OWLClass owlRecipeClass = factory.getOWLClass(recipeClassIRI);
        String ruleClassURI = Symbols.Rule.toString().replace("<", "").replace(">", "");
        IRI ruleClassIRI = IRI.create(ruleClassURI);
        OWLClass owlRuleClass = factory.getOWLClass(ruleClassIRI);
        String descriptionURI = Symbols.description.toString().replace("<", "").replace(">", "");
        IRI descriptionIRI = IRI.create(descriptionURI);
        OWLDataProperty descriptionProperty = factory.getOWLDataProperty(descriptionIRI);
        String hasRuleURI = Symbols.hasRule.toString().replace("<", "").replace(">", "");
        IRI hasRuleIRI = IRI.create(hasRuleURI);
        OWLObjectProperty hasRule = factory.getOWLObjectProperty(hasRuleIRI);
        String ruleBodyURI = Symbols.ruleBody.toString().replace("<", "").replace(">", "");
        IRI ruleBodyIRI = IRI.create(ruleBodyURI);
        OWLDataProperty ruleBody = factory.getOWLDataProperty(ruleBodyIRI);
        String ruleHeadURI = Symbols.ruleHead.toString().replace("<", "").replace(">", "");
        IRI ruleHeadIRI = IRI.create(ruleHeadURI);
        OWLDataProperty ruleHead = factory.getOWLDataProperty(ruleHeadIRI);
        if (ruleList != null) {
            for (Rule rule : ruleList) {
                String recipeId = rule.getRecipe().getRecipeID().toString().replace("<", "").replace(">", "");
                IRI reicpeIRI = IRI.create(recipeId);
                OWLIndividual owlRecipe = factory.getOWLNamedIndividual(reicpeIRI);
                String ruleId = rule.getRuleID().toString().replace("<", "").replace(">", "");
                IRI ruleIRI = IRI.create(ruleId);
                OWLIndividual owlRule = factory.getOWLNamedIndividual(ruleIRI);
                OWLAxiom axiom = factory.getOWLClassAssertionAxiom(owlRecipeClass, owlRecipe);
                manager.addAxiom(ontology, axiom);
                axiom = factory.getOWLClassAssertionAxiom(owlRuleClass, owlRule);
                manager.addAxiom(ontology, axiom);
                axiom = factory.getOWLObjectPropertyAssertionAxiom(hasRule, owlRecipe, owlRule);
                manager.addAxiom(ontology, axiom);
                String recipeDescription = rule.getRecipe().getRecipeDescription();
                String ruleDescription = rule.getDescription();
                if (recipeDescription != null) {
                    axiom = factory.getOWLDataPropertyAssertionAxiom(descriptionProperty, owlRecipe, recipeDescription);
                    manager.addAxiom(ontology, axiom);
                }
                if (ruleDescription != null) {
                    axiom = factory.getOWLDataPropertyAssertionAxiom(descriptionProperty, owlRule, ruleDescription);
                    manager.addAxiom(ontology, axiom);
                }
                String ruleContent = rule.toString();
                String[] parts = ruleContent.split("\\->");
                axiom = factory.getOWLDataPropertyAssertionAxiom(ruleBody, owlRule, parts[0]);
                manager.addAxiom(ontology, axiom);
                axiom = factory.getOWLDataPropertyAssertionAxiom(ruleHead, owlRule, parts[1]);
                manager.addAxiom(ontology, axiom);
            }
        }
        if (mediaType.toString().equals(KRFormat.RDF_XML)) {
            try {
                manager.saveOntology(ontology, new RDFXMLOntologyFormat(), out);
            } catch (OWLOntologyStorageException e) {
                log.error("Failed to store ontology for rendering.", e);
            }
        } else if (mediaType.toString().equals(KRFormat.OWL_XML)) {
            try {
                manager.saveOntology(ontology, new OWLXMLOntologyFormat(), out);
            } catch (OWLOntologyStorageException e) {
                log.error("Failed to store ontology for rendering.", e);
            }
        } else if (mediaType.toString().equals(KRFormat.MANCHESTER_OWL)) {
            try {
                manager.saveOntology(ontology, new ManchesterOWLSyntaxOntologyFormat(), out);
            } catch (OWLOntologyStorageException e) {
                log.error("Failed to store ontology for rendering.", e);
            }
        } else if (mediaType.toString().equals(KRFormat.FUNCTIONAL_OWL)) {
            try {
                manager.saveOntology(ontology, new OWLFunctionalSyntaxOntologyFormat(), out);
            } catch (OWLOntologyStorageException e) {
                log.error("Failed to store ontology for rendering.", e);
            }
        } else if (mediaType.toString().equals(KRFormat.TURTLE)) {
            try {
                manager.saveOntology(ontology, new TurtleOntologyFormat(), out);
            } catch (OWLOntologyStorageException e) {
                log.error("Failed to store ontology for rendering.", e);
            }
        } else if (mediaType.toString().equals(KRFormat.RDF_JSON)) {
            Graph mGraph = OWLAPIToClerezzaConverter.owlOntologyToClerezzaGraph(ontology);
            RdfJsonSerializingProvider provider = new RdfJsonSerializingProvider();
            provider.serialize(out, mGraph, SupportedFormat.RDF_JSON);
        }
    } catch (OWLOntologyCreationException e1) {
        log.error("An error occurred.", e1);
    }
    out.flush();
}

Example 54 with OWLOntologyCreationException

use of org.semanticweb.owlapi.model.OWLOntologyCreationException in project stanbol by apache.

the class RefactorResource method applyRefactoring.

//    public RefactorResource(@Context ServletContext servletContext) {
//        refactorer = (Refactorer) ContextHelper.getServiceFromContext(Refactorer.class, servletContext);
//        if (refactorer == null) throw new IllegalStateException("Refactorer missing in ServletContext");
//        ruleStore = (RuleStore) ContextHelper.getServiceFromContext(RuleStore.class, servletContext);
//        if (ruleStore == null) throw new IllegalStateException("RuleStore missing in ServletContext");
//    }
/**
     * The apply mode allows the client to compose a recipe, by mean of string containg the rules, and apply
     * it "on the fly" to the graph in input.
     * 
     * @param recipe
     *            String
     * @param input
     *            InputStream
     * @return a Response containing the transformed graph
     */
@POST
@Path("/apply")
@Consumes(MediaType.MULTIPART_FORM_DATA)
@Produces(value = { TURTLE, RDF_XML, MANCHESTER_OWL, FUNCTIONAL_OWL, OWL_XML, RDF_JSON, X_TURTLE })
public Response applyRefactoring(MultiPartBody data, @Context HttpHeaders headers) {
    String recipe = null;
    InputStream input = null;
    if (data.getTextParameterValues(recipe) != null) {
        recipe = data.getTextParameterValues(recipe)[0];
    }
    if (data.getFormFileParameterValues("input") != null) {
        input = new ByteArrayInputStream(data.getFormFileParameterValues("input")[0].getContent());
    }
    if (recipe == null || input == null) {
        throw new WebApplicationException(BAD_REQUEST);
    }
    ResponseBuilder rb;
    OWLOntology output = null;
    try {
        output = doRefactoring(input, RuleParserImpl.parse("http://incubator.apache.com/stanbol/rules/refactor/", recipe));
    } catch (OWLOntologyCreationException e1) {
        throw new WebApplicationException(e1, INTERNAL_SERVER_ERROR);
    } catch (RefactoringException e1) {
        throw new WebApplicationException(e1, BAD_REQUEST);
    }
    if (output != null) {
        rb = Response.ok(output);
        MediaType mediaType = MediaTypeUtil.getAcceptableMediaType(headers, null);
        if (mediaType != null)
            rb.header(HttpHeaders.CONTENT_TYPE, mediaType);
    } else
        rb = Response.status(NOT_FOUND);
    //        addCORSOrigin(servletContext, rb, headers);
    return rb.build();
}