Examples with Control org.vcell.pathway.Control used on opensource projects

Example 11 with Control

use of org.vcell.pathway.Control in project vcell by virtualcell.

the class PathwayProducerBiopax3 method addContentControl.

// controller 		Pathway 		multiple
// controller 		PhysicalEntity 	multiple
// controlType 	String 			single
// controlled 		Interaction 	single
// controlled 		Pathway 		single
private Element addContentControl(BioPaxObject bpObject, Element element) {
    element = addContentInteraction(bpObject, element);
    Control ob = (Control) bpObject;
    Element tmpElement = null;
    if (ob.getPathwayControllers() != null && ob.getPathwayControllers().size() > 0) {
        List<Pathway> list = ob.getPathwayControllers();
        for (Pathway item : list) {
            tmpElement = new Element("controller", bp);
            addIDToProperty(tmpElement, item);
            mustPrintObject(item);
            element.addContent(tmpElement);
        }
    }
    if (ob.getPhysicalControllers() != null && ob.getPhysicalControllers().size() > 0) {
        List<PhysicalEntity> list = ob.getPhysicalControllers();
        for (PhysicalEntity item : list) {
            tmpElement = new Element("controller", bp);
            addIDToProperty(tmpElement, item);
            mustPrintObject(item);
            element.addContent(tmpElement);
        }
    }
    if (ob.getControlType() != null && ob.getControlType().length() > 0) {
        tmpElement = new Element("controlType", bp);
        tmpElement.setAttribute("datatype", schemaString, rdf);
        tmpElement.setText(ob.getControlType());
        element.addContent(tmpElement);
    }
    if (ob.getControlledInteraction() != null) {
        tmpElement = new Element("controlled", bp);
        addIDToProperty(tmpElement, ob.getControlledInteraction());
        mustPrintObject(ob.getControlledInteraction());
        element.addContent(tmpElement);
    }
    if (ob.getControlledPathway() != null) {
        tmpElement = new Element("controlled", bp);
        addIDToProperty(tmpElement, ob.getControlledPathway());
        mustPrintObject(ob.getControlledPathway());
        element.addContent(tmpElement);
    }
    return element;
}

Example 12 with Control

use of org.vcell.pathway.Control in project vcell by virtualcell.

the class PathwayReader method addObjectControl.

private Control addObjectControl(Element controlElement) {
    Control control = new Control();
    addAttributes(control, controlElement);
    for (Object child : controlElement.getChildren()) {
        if (child instanceof Element) {
            if (!addContentControl(control, controlElement, (Element) child)) {
                showUnexpected((Element) child, control);
            }
        }
    }
    pathwayModel.add(control);
    return control;
}