Examples with MolecularInteraction org.vcell.pathway.MolecularInteraction used on opensource projects

Example 6 with MolecularInteraction

use of org.vcell.pathway.MolecularInteraction in project vcell by virtualcell.

the class PathwayReaderBiopax3 method addObjectMolecularInteraction.

private MolecularInteraction addObjectMolecularInteraction(Element element) {
    MolecularInteraction molecularInteraction = new MolecularInteraction();
    addAttributes(molecularInteraction, element);
    for (Object child : element.getChildren()) {
        if (!addContentMolecularInteraction(molecularInteraction, element, (Element) child)) {
            showUnexpected((Element) child);
        }
    }
    pathwayModel.add(molecularInteraction);
    return molecularInteraction;
}