Examples with ConversionProxy org.vcell.pathway.persistence.BiopaxProxy.ConversionProxy used on opensource projects

Example 1 with ConversionProxy

use of org.vcell.pathway.persistence.BiopaxProxy.ConversionProxy in project vcell by virtualcell.

the class PathwayReaderBiopax3 method addObjectConversion.

private Conversion addObjectConversion(Element conversionElement) {
    if (conversionElement.getChildren().size() == 0) {
        ConversionProxy proxy = new ConversionProxy();
        addAttributes(proxy, conversionElement);
        pathwayModel.add(proxy);
        return proxy;
    }
    Conversion conversion = new ConversionImpl();
    addAttributes(conversion, conversionElement);
    for (Object child : conversionElement.getChildren()) {
        if (child instanceof Element) {
            if (!addContentConversion(conversion, conversionElement, (Element) child)) {
                showUnexpected((Element) child);
            }
        }
    }
    pathwayModel.add(conversion);
    return conversion;
}