Examples with SimulationTaskRepresentation org.vcell.rest.common.SimulationTaskRepresentation used on opensource projects

Example 1 with SimulationTaskRepresentation

use of org.vcell.rest.common.SimulationTaskRepresentation in project vcell by virtualcell.

the class SimulationTasksServerResource method getSimulationTaskRepresentations.

private SimulationTaskRepresentation[] getSimulationTaskRepresentations(User vcellUser) {
    // if (!application.authenticate(getRequest(), getResponse())){
    // // not authenticated
    // return new SimulationTaskRepresentation[0];
    // }else{
    ArrayList<SimulationTaskRepresentation> simTaskReps = new ArrayList<SimulationTaskRepresentation>();
    RestDatabaseService restDatabaseService = ((VCellApiApplication) getApplication()).getRestDatabaseService();
    try {
        SimpleJobStatus[] simJobStatusList = restDatabaseService.query(this, vcellUser);
        for (SimpleJobStatus simpleJobStatus : simJobStatusList) {
            SimulationTaskRepresentation simTaskRep = new SimulationTaskRepresentation(simpleJobStatus);
            simTaskReps.add(simTaskRep);
        }
    } catch (PermissionException ee) {
        throw new ResourceException(Status.CLIENT_ERROR_UNAUTHORIZED, "permission denied to requested resource");
    } catch (DataAccessException e) {
        e.printStackTrace();
        throw new RuntimeException("failed to retrieve active jobs from VCell Database : " + e.getMessage());
    } catch (SQLException e) {
        e.printStackTrace();
        throw new RuntimeException("failed to retrieve active jobs from VCell Database : " + e.getMessage());
    }
    return simTaskReps.toArray(new SimulationTaskRepresentation[0]);
// }
}

Example 2 with SimulationTaskRepresentation

use of org.vcell.rest.common.SimulationTaskRepresentation in project vcell by virtualcell.

the class SimulationTasksServerResource method get_html.

@Override
public Representation get_html() {
    VCellApiApplication application = ((VCellApiApplication) getApplication());
    User vcellUser = application.getVCellUser(getChallengeResponse(), AuthenticationPolicy.ignoreInvalidCredentials);
    SimulationTaskRepresentation[] simTasks = getSimulationTaskRepresentations(vcellUser);
    Map<String, Object> dataModel = new HashMap<String, Object>();
    // +"?"+VCellApiApplication.REDIRECTURL_FORMNAME+"="+getRequest().getResourceRef().toUrl());
    dataModel.put("loginurl", "/" + VCellApiApplication.LOGINFORM);
    dataModel.put("logouturl", "/" + VCellApiApplication.LOGOUT + "?" + VCellApiApplication.REDIRECTURL_FORMNAME + "=" + Reference.encode(getRequest().getResourceRef().toUrl().toString()));
    if (vcellUser != null) {
        dataModel.put("userid", vcellUser.getName());
    }
    dataModel.put("userId", getAttribute(PARAM_USER));
    dataModel.put("simId", getQueryValue(PARAM_SIM_ID));
    dataModel.put("jobId", getLongQueryValue(PARAM_JOB_ID));
    dataModel.put("taskId", getLongQueryValue(PARAM_TASK_ID));
    dataModel.put("computeHost", getQueryValue(PARAM_COMPUTE_HOST));
    dataModel.put("serverId", getQueryValue(PARAM_SERVER_ID));
    dataModel.put("hasData", getQueryValue(PARAM_HAS_DATA));
    dataModel.put("waiting", getBooleanQueryValue(PARAM_STATUS_WAITING, false));
    dataModel.put("queued", getBooleanQueryValue(PARAM_STATUS_QUEUED, false));
    dataModel.put("dispatched", getBooleanQueryValue(PARAM_STATUS_DISPATCHED, false));
    dataModel.put("running", getBooleanQueryValue(PARAM_STATUS_RUNNING, false));
    dataModel.put("completed", getBooleanQueryValue(PARAM_STATUS_COMPLETED, false));
    dataModel.put("failed", getBooleanQueryValue(PARAM_STATUS_FAILED, false));
    dataModel.put("stopped", getBooleanQueryValue(PARAM_STATUS_STOPPED, false));
    dataModel.put("submitLow", getLongQueryValue(PARAM_SUBMIT_LOW));
    dataModel.put("submitHigh", getLongQueryValue(PARAM_SUBMIT_HIGH));
    dataModel.put("startLow", getLongQueryValue(PARAM_START_LOW));
    dataModel.put("startHigh", getLongQueryValue(PARAM_START_HIGH));
    dataModel.put("endLow", getLongQueryValue(PARAM_END_LOW));
    dataModel.put("endHigh", getLongQueryValue(PARAM_END_HIGH));
    Long startRowParam = getLongQueryValue(PARAM_START_ROW);
    if (startRowParam != null) {
        dataModel.put("startRow", startRowParam);
    } else {
        dataModel.put("startRow", 1);
    }
    Long maxRowsParam = getLongQueryValue(PARAM_MAX_ROWS);
    if (maxRowsParam != null) {
        dataModel.put("maxRows", maxRowsParam);
    } else {
        dataModel.put("maxRows", 10);
    }
    dataModel.put("simTasks", Arrays.asList(simTasks));
    Gson gson = new Gson();
    dataModel.put("jsonResponse", gson.toJson(simTasks));
    Configuration templateConfiguration = application.getTemplateConfiguration();
    Representation formFtl = new ClientResource(LocalReference.createClapReference("/simulationTasks.ftl")).get();
    TemplateRepresentation templateRepresentation = new TemplateRepresentation(formFtl, templateConfiguration, dataModel, MediaType.TEXT_HTML);
    return templateRepresentation;
}