Examples with DomainType org.vcell.sbmlsim.api.common.DomainType used on opensource projects

Example 1 with DomainType

use of org.vcell.sbmlsim.api.common.DomainType in project vcell by virtualcell.

the class SimulationServiceImpl method getVariableList.

@Override
public List<VariableInfo> getVariableList(SimulationInfo simInfo) throws Exception {
    SimulationServiceContext simServiceContext = sims.get(simInfo.getLocalId());
    if (simServiceContext == null) {
        throw new Exception("simulation results not found");
    }
    try {
        DataSetControllerImpl datasetController = getDataSetController(simServiceContext);
        OutputContext outputContext = new OutputContext(new AnnotatedFunction[0]);
        final DataIdentifier[] dataIdentifiers;
        try {
            dataIdentifiers = datasetController.getDataIdentifiers(outputContext, simServiceContext.vcDataIdentifier);
        } catch (IOException | DataAccessException e) {
            e.printStackTrace();
            throw new RuntimeException("failed to retrieve variable information: " + e.getMessage(), e);
        }
        ArrayList<VariableInfo> varInfos = new ArrayList<VariableInfo>();
        for (DataIdentifier dataIdentifier : dataIdentifiers) {
            final DomainType domainType;
            if (dataIdentifier.getVariableType().equals(VariableType.VOLUME)) {
                domainType = DomainType.VOLUME;
            } else if (dataIdentifier.getVariableType().equals(VariableType.MEMBRANE)) {
                domainType = DomainType.MEMBRANE;
            } else {
                continue;
            }
            String domainName = "";
            if (dataIdentifier.getDomain() != null) {
                domainName = dataIdentifier.getDomain().getName();
            }
            VariableInfo varInfo = new VariableInfo(dataIdentifier.getName(), dataIdentifier.getDisplayName(), domainName, domainType);
            varInfos.add(varInfo);
        }
        return varInfos;
    } catch (Exception e) {
        e.printStackTrace();
        throw new Exception("failed to retrieve variable list: " + e.getMessage());
    }
}