Example 61 with MathModelInfo
use of org.vcell.util.document.MathModelInfo in project vcell by virtualcell.
the class VCellBasicCellRenderer method getTreeCellRendererComponent.
/**
* Insert the method's description here.
* Creation date: (7/27/2000 6:41:57 PM)
* @return java.awt.Component
*/
public java.awt.Component getTreeCellRendererComponent(JTree tree, Object value, boolean sel, boolean expanded, boolean leaf, int row, boolean hasFocus) {
JLabel component = (JLabel) super.getTreeCellRendererComponent(tree, value, sel, expanded, leaf, row, hasFocus);
//
if (!leaf && expanded) {
setIcon(fieldFolderOpenIcon);
} else if (!leaf && !expanded) {
setIcon(fieldFolderClosedIcon);
}
try {
if (value instanceof BioModelNode) {
BioModelNode node = (BioModelNode) value;
boolean bLoaded = false;
//
// Check if node is a SolverResultSetInfo
//
Object userObject = node.getUserObject();
if (userObject instanceof SimulationInfo) {
//
// Check if node is a SimulationInfo
//
setComponentProperties(component, (SimulationInfo) userObject);
int maxErrorLevel = getMaxErrorLevel(node);
if (maxErrorLevel == BioModelNode.ERROR_POSSIBLE) {
setIcon(fieldSimulationWarningIcon);
component.setToolTipText("Simulation contains possibly invalid results");
} else if (maxErrorLevel == BioModelNode.ERROR_CONFIRMED) {
setIcon(fieldSimulationErrorIcon);
component.setToolTipText("Simulation contains invalid results");
}
} else if (userObject instanceof String && node.getChildCount() == 0) {
component.setToolTipText(null);
component.setText((String) userObject);
} else if (userObject instanceof BioModelInfo) {
//
// Check if node is a BioModelInfo
//
setComponentProperties(component, (BioModelInfo) userObject);
bLoaded = isLoaded((BioModelInfo) userObject);
int maxErrorLevel = getMaxErrorLevel(node);
if (maxErrorLevel == BioModelNode.ERROR_POSSIBLE) {
setIcon(fieldBioModelWarningIcon);
component.setToolTipText("BioModel version: Has possibly invalid simulation results");
} else if (maxErrorLevel == BioModelNode.ERROR_CONFIRMED) {
setIcon(fieldBioModelErrorIcon);
component.setToolTipText("BioModel version: Has invalid simulation results");
}
} else if (userObject instanceof String && node.getChildCount() > 0 && ((BioModelNode) node.getChildAt(0)).getUserObject() instanceof BioModelInfo) {
//
// Check if node is a BioModelName (String), with children (at least one version of biomodel), and if the child is a
// BioModelInfo node
//
String label = (String) userObject;
component.setToolTipText("BioModel");
component.setText(label);
//
// check if child is loaded
//
int maxErrorLevel = BioModelNode.ERROR_NONE;
for (int i = 0; i < node.getChildCount(); i++) {
maxErrorLevel = Math.max(maxErrorLevel, getMaxErrorLevel((BioModelNode) node.getChildAt(i)));
}
if (maxErrorLevel == BioModelNode.ERROR_POSSIBLE) {
if (!leaf && expanded) {
setIcon(fieldFolderOpenWarningIcon);
} else if (!leaf && !expanded) {
setIcon(fieldFolderClosedWarningIcon);
}
component.setToolTipText("BioModel: one or more versions may have invalid simulation results");
} else if (maxErrorLevel == BioModelNode.ERROR_CONFIRMED) {
if (!leaf && expanded) {
setIcon(fieldFolderOpenErrorIcon);
} else if (!leaf && !expanded) {
setIcon(fieldFolderClosedErrorIcon);
}
component.setToolTipText("BioModel: one or more versions have invalid simulation results");
}
//
for (int i = 0; i < node.getChildCount(); i++) {
BioModelInfo bioModelInfo = (BioModelInfo) ((BioModelNode) node.getChildAt(i)).getUserObject();
if (isLoaded(bioModelInfo)) {
bLoaded = true;
}
}
} else if (userObject instanceof User && node.getChildCount() > 0 && (((BioModelNode) node.getChildAt(0)).getUserObject() instanceof String) && ((BioModelNode) (node.getChildAt(0).getChildAt(0))).getUserObject() instanceof BioModelInfo) {
//
// Check if node is a User, with at least one child which is a string (BioModel name)
// and if the child's child is a BioModelInfo node
//
String label = ((User) userObject).getName();
component.setToolTipText("User Name");
component.setText(label);
if (isLoaded((User) userObject)) {
bLoaded = true;
}
} else if (userObject instanceof MathModelInfo) {
//
// Check if node is a MathModelInfo node
//
setComponentProperties(component, (MathModelInfo) userObject);
bLoaded = isLoaded((MathModelInfo) userObject);
} else if (userObject instanceof String && node.getChildCount() > 0 && ((BioModelNode) node.getChildAt(0)).getUserObject() instanceof MathModelInfo) {
//
// Check if node is a MathModel name (String), with children (at least one version of mathmodel), and
// if the child is a MathModelInfo node
//
String label = (String) userObject;
component.setToolTipText("Mathematical Model");
component.setText(label);
//
for (int i = 0; i < node.getChildCount(); i++) {
MathModelInfo mathModelInfo = (MathModelInfo) ((BioModelNode) node.getChildAt(i)).getUserObject();
if (isLoaded(mathModelInfo)) {
bLoaded = true;
}
}
} else if (userObject instanceof User && node.getChildCount() > 0 && (((BioModelNode) node.getChildAt(0)).getUserObject() instanceof String) && ((BioModelNode) (node.getChildAt(0).getChildAt(0))).getUserObject() instanceof MathModelInfo) {
//
// Check if node is a User, with at least one child which is a string (Mathmodel name)
// and if the child's child is a MathModelInfo node
//
String label = ((User) userObject).getName();
component.setToolTipText("User Name");
component.setText(label);
if (isLoaded((User) userObject)) {
bLoaded = true;
}
} else if (userObject instanceof cbit.vcell.geometry.GeometryInfo) {
//
// Check if node is a GeometryInfo
//
setComponentProperties(component, (GeometryInfo) userObject);
bLoaded = isLoaded((GeometryInfo) userObject);
} else if (userObject instanceof String && node.getChildCount() > 0 && ((BioModelNode) node.getChildAt(0)).getUserObject() instanceof GeometryInfo) {
//
// Check if node is a Geometry name (String), with children (at least one version of Geometry), and
// if the child is a GeometryInfo node
//
String label = (String) userObject;
component.setToolTipText("Geometry");
component.setText(label);
//
for (int i = 0; i < node.getChildCount(); i++) {
GeometryInfo geometryInfo = (GeometryInfo) ((BioModelNode) node.getChildAt(i)).getUserObject();
if (isLoaded(geometryInfo)) {
bLoaded = true;
}
}
} else if (userObject instanceof User && node.getChildCount() > 0 && (((BioModelNode) node.getChildAt(0)).getUserObject() instanceof String) && ((BioModelNode) (node.getChildAt(0).getChildAt(0))).getUserObject() instanceof GeometryInfo) {
//
// Check if node is a User, with at least one child which is a string (Geometry name)
// and if the child's child is a GeometryInfo node
//
String label = ((User) userObject).getName();
component.setToolTipText("User Name");
component.setText(label);
if (isLoaded((User) userObject)) {
bLoaded = true;
}
} else if (userObject instanceof String && node.getChildCount() > 0) {
component.setToolTipText(null);
component.setText((String) userObject);
// }else if (node.getUserObject() instanceof MathInfo) {
// setComponentProperties(component,(MathInfo)node.getUserObject());
} else if (userObject instanceof VCImageInfo) {
setComponentProperties(component, (VCImageInfo) userObject);
} else if (userObject instanceof Extent) {
setComponentProperties(component, (Extent) userObject);
} else if (userObject instanceof Annotation) {
setComponentProperties(component, (Annotation) userObject);
} else if (userObject instanceof MathModel) {
setComponentProperties(component, (MathModel) userObject);
} else if (userObject instanceof BioModel) {
setComponentProperties(component, (BioModel) userObject);
} else if (userObject instanceof SimulationContext) {
setComponentProperties(component, (SimulationContext) userObject);
bLoaded = isLoaded((SimulationContext) userObject);
} else if (userObject instanceof Simulation) {
setComponentProperties(component, (Simulation) userObject);
} else if (userObject instanceof MathDescription) {
setComponentProperties(component, (MathDescription) userObject);
} else if (userObject instanceof Geometry) {
setComponentProperties(component, (Geometry) userObject);
} else if (userObject instanceof User) {
setComponentProperties(component, (User) userObject);
} else {
setComponentProperties(component, userObject);
}
if (selectedFont == null && component.getFont() != null) {
selectedFont = component.getFont().deriveFont(Font.BOLD);
}
if (unselectedFont == null && component.getFont() != null) {
unselectedFont = component.getFont().deriveFont(Font.PLAIN);
}
if (bLoaded) {
component.setFont(selectedFont);
} else {
component.setFont(unselectedFont);
}
}
} catch (Throwable e) {
e.printStackTrace(System.out);
}
//
return component;
}
Also used :
MathModel(cbit.vcell.mathmodel.MathModel)
User(org.vcell.util.document.User)
Extent(org.vcell.util.Extent)
MathDescription(cbit.vcell.math.MathDescription)
BioModelInfo(org.vcell.util.document.BioModelInfo)
JLabel(javax.swing.JLabel)
MathModelInfo(org.vcell.util.document.MathModelInfo)
SimulationContext(cbit.vcell.mapping.SimulationContext)
Geometry(cbit.vcell.geometry.Geometry)
Simulation(cbit.vcell.solver.Simulation)
BioModel(cbit.vcell.biomodel.BioModel)
GeometryInfo(cbit.vcell.geometry.GeometryInfo)
VCImageInfo(cbit.image.VCImageInfo)
SimulationInfo(cbit.vcell.solver.SimulationInfo)
Example 62 with MathModelInfo
use of org.vcell.util.document.MathModelInfo in project vcell by virtualcell.
the class ClientRequestManager method compareWithOther.
/**
* Processes the model comparison request.
* Creation date: (6/9/2004 1:07:09 PM)
* @param vcDocument cbit.vcell.document.VCDocument
*/
public XmlTreeDiff compareWithOther(final VCDocumentInfo docInfo1, final VCDocumentInfo docInfo2) {
VCDocument document1, document2;
try {
// get the VCDocument versions from documentManager
if (docInfo1 instanceof BioModelInfo && docInfo2 instanceof BioModelInfo) {
document1 = getDocumentManager().getBioModel((BioModelInfo) docInfo1);
document2 = getDocumentManager().getBioModel((BioModelInfo) docInfo2);
} else if (docInfo1 instanceof MathModelInfo && docInfo2 instanceof MathModelInfo) {
document1 = getDocumentManager().getMathModel((MathModelInfo) docInfo1);
document2 = getDocumentManager().getMathModel((MathModelInfo) docInfo2);
} else if (docInfo1 instanceof GeometryInfo && docInfo2 instanceof GeometryInfo) {
document1 = getDocumentManager().getGeometry((GeometryInfo) docInfo1);
document2 = getDocumentManager().getGeometry((GeometryInfo) docInfo2);
} else {
throw new IllegalArgumentException("The two documents are invalid or of different types.");
}
return compareDocuments(document1, document2, DiffConfiguration.COMPARE_DOCS_OTHER);
} catch (Exception e) {
e.printStackTrace();
throw new RuntimeException(e.getMessage());
}
}
Also used :
VCDocument(org.vcell.util.document.VCDocument)
BioModelInfo(org.vcell.util.document.BioModelInfo)
GeometryInfo(cbit.vcell.geometry.GeometryInfo)
MathModelInfo(org.vcell.util.document.MathModelInfo)
ProgrammingException(org.vcell.util.ProgrammingException)
GeometryException(cbit.vcell.geometry.GeometryException)
IOException(java.io.IOException)
DataAccessException(org.vcell.util.DataAccessException)
PropertyVetoException(java.beans.PropertyVetoException)
ImageException(cbit.image.ImageException)
UtilCancelException(org.vcell.util.UtilCancelException)
DataFormatException(java.util.zip.DataFormatException)
UserCancelException(org.vcell.util.UserCancelException)
Example 63 with MathModelInfo
use of org.vcell.util.document.MathModelInfo in project vcell by virtualcell.
the class ClientRequestManager method getGeometryFromDocumentSelection.
public Geometry getGeometryFromDocumentSelection(Component parentComponent, VCDocumentInfo vcDocumentInfo, boolean bClearVersion) throws Exception, UserCancelException {
Geometry geom = null;
if (vcDocumentInfo.getVersionType().equals(VersionableType.BioModelMetaData)) /*documentType == VCDocument.BIOMODEL_DOC*/
{
BioModelInfo bioModelInfo = getDocumentManager().getBioModelInfo(vcDocumentInfo.getVersion().getVersionKey());
BioModelChildSummary bioModelChildSummary = bioModelInfo.getBioModelChildSummary();
if (bioModelChildSummary != null && bioModelChildSummary.getSimulationContextNames() != null) {
Vector<Integer> spatialV = new Vector<Integer>();
for (int i = 0; i < bioModelChildSummary.getSimulationContextNames().length; i++) {
if (bioModelChildSummary.getGeometryDimensions()[i] > 0) {
spatialV.add(i);
}
}
if (spatialV.size() > 0) {
String[] columnNames = new String[] { "Application", "Geometry", "Dimension" };
String[][] rowData = new String[spatialV.size()][3];
for (int i = 0; i < spatialV.size(); i++) {
rowData[i][0] = bioModelChildSummary.getSimulationContextNames()[spatialV.elementAt(i)];
rowData[i][1] = bioModelChildSummary.getGeometryNames()[spatialV.elementAt(i)];
rowData[i][2] = bioModelChildSummary.getGeometryDimensions()[spatialV.elementAt(i)] + "";
}
int[] selection = DialogUtils.showComponentOKCancelTableList(JOptionPane.getFrameForComponent(parentComponent), "Select Geometry", columnNames, rowData, ListSelectionModel.SINGLE_SELECTION);
ModelGeometryOPResults modelGeometryOPResults = (ModelGeometryOPResults) getDocumentManager().getSessionManager().getUserMetaDbServer().doTestSuiteOP(new ModelGeometryOP((BioModelInfo) vcDocumentInfo, rowData[selection[0]][0]));
geom = getDocumentManager().getGeometry(modelGeometryOPResults.getGeometryKey());
// BioModel bioModel = getDocumentManager().getBioModel((BioModelInfo)vcDocumentInfo);
// for (int i = 0; i < bioModel.getSimulationContexts().length; i++) {
// if(bioModel.getSimulationContexts()[i].getName().equals(rowData[selection[0]][0])){
// geom = bioModel.getSimulationContexts()[i].getGeometry();
// break;
// }
// }
} else {
throw new Exception("BioModel '" + bioModelInfo.getVersion().getName() + "' contains no spatial geometries.");
}
} else {
throw new Exception("BioModel '" + bioModelInfo.getVersion().getName() + "' contains no spatial geometries.");
}
} else if (vcDocumentInfo.getVersionType().equals(VersionableType.MathModelMetaData)) /*documentType == VCDocument.MATHMODEL_DOC*/
{
MathModelInfo mathModelInfo = getDocumentManager().getMathModelInfo(vcDocumentInfo.getVersion().getVersionKey());
MathModelChildSummary mathModelChildSummary = mathModelInfo.getMathModelChildSummary();
if (mathModelChildSummary != null) {
if (mathModelChildSummary.getGeometryDimension() > 0) {
ModelGeometryOPResults modelGeometryOPResults = (ModelGeometryOPResults) getDocumentManager().getSessionManager().getUserMetaDbServer().doTestSuiteOP(new ModelGeometryOP((MathModelInfo) vcDocumentInfo));
geom = getDocumentManager().getGeometry(modelGeometryOPResults.getGeometryKey());
// MathModel mathModel = getDocumentManager().getMathModel(mathModelInfo);
// geom = mathModel.getMathDescription().getGeometry();
} else {
throw new Exception("MathModel '" + mathModelInfo.getVersion().getName() + "' contains no spatial geometry.");
}
} else {
throw new Exception("MathModel '" + mathModelInfo.getVersion().getName() + "' contains no spatial geometry.");
}
} else if (vcDocumentInfo.getVersionType().equals(VersionableType.Geometry)) {
geom = getDocumentManager().getGeometry((GeometryInfo) vcDocumentInfo);
if (geom.getDimension() == 0) {
throw new Exception("Error, Only spatial geometries allowed (dimension > 0).");
}
} else {
throw new IllegalArgumentException("Error selecting geometry from document type " + vcDocumentInfo.getVersionType() + ". Must be BioModel,MathModel or Geometry.");
}
if (geom == null) {
throw new Exception("error selecting geometry");
}
if (bClearVersion) {
geom.clearVersion();
}
return geom;
}
Also used :
BioModelChildSummary(org.vcell.util.document.BioModelChildSummary)
BioModelInfo(org.vcell.util.document.BioModelInfo)
MathModelInfo(org.vcell.util.document.MathModelInfo)
ProgrammingException(org.vcell.util.ProgrammingException)
GeometryException(cbit.vcell.geometry.GeometryException)
IOException(java.io.IOException)
DataAccessException(org.vcell.util.DataAccessException)
PropertyVetoException(java.beans.PropertyVetoException)
ImageException(cbit.image.ImageException)
UtilCancelException(org.vcell.util.UtilCancelException)
DataFormatException(java.util.zip.DataFormatException)
UserCancelException(org.vcell.util.UserCancelException)
Geometry(cbit.vcell.geometry.Geometry)
MathModelChildSummary(org.vcell.util.document.MathModelChildSummary)
GeometryInfo(cbit.vcell.geometry.GeometryInfo)
ModelGeometryOPResults(cbit.vcell.numericstest.ModelGeometryOPResults)
Vector(java.util.Vector)
ModelGeometryOP(cbit.vcell.numericstest.ModelGeometryOP)
Example 64 with MathModelInfo
use of org.vcell.util.document.MathModelInfo in project vcell by virtualcell.
the class DbDriver method getVCInfoContainer.
/**
* Insert the method's description here.
* Creation date: (9/24/2003 12:54:32 PM)
* @return cbit.vcell.modeldb.VCInfoContainer
*/
public static VCInfoContainer getVCInfoContainer(User user, Connection con, DatabaseSyntax dbSyntax) throws SQLException, DataAccessException {
VCInfoContainer results = null;
//
VCImageInfo[] vcImageInfos = null;
GeometryInfo[] geometryInfos = null;
MathModelInfo[] mathModelInfos = null;
BioModelInfo[] bioModelInfos = null;
//
StringBuffer sql = null;
String special = null;
ResultSet rset = null;
boolean enableSpecial = true;
boolean enableDistinct = true;
Statement stmt = con.createStatement();
try {
//
// BioModelInfos
//
{
double beginTime = System.currentTimeMillis();
special = " ORDER BY " + BioModelTable.table.name.getQualifiedColName() + "," + BioModelTable.table.versionBranchID.getQualifiedColName() + "," + BioModelTable.table.versionDate.getQualifiedColName();
sql = new StringBuffer(BioModelTable.table.getInfoSQL(user, null, (enableSpecial ? special : null), dbSyntax));
sql.insert(7, Table.SQL_GLOBAL_HINT);
rset = stmt.executeQuery(sql.toString());
ArrayList<BioModelInfo> tempInfos = new ArrayList<BioModelInfo>();
Set<String> distinctV = new HashSet<String>();
while (rset.next()) {
BioModelInfo versionInfo = (BioModelInfo) BioModelTable.table.getInfo(rset, con, dbSyntax);
if (!distinctV.contains(versionInfo.getVersion().getVersionKey().toString())) {
tempInfos.add(versionInfo);
distinctV.add(versionInfo.getVersion().getVersionKey().toString());
}
}
rset.close();
if (tempInfos.size() > 0) {
bioModelInfos = new BioModelInfo[tempInfos.size()];
tempInfos.toArray(bioModelInfos);
}
if (lg.isInfoEnabled()) {
lg.info("BioModelInfo Time=" + (((double) System.currentTimeMillis() - beginTime) / (double) 1000));
}
}
//
// MathModelInfos
//
{
double beginTime = System.currentTimeMillis();
special = " ORDER BY " + MathModelTable.table.name.getQualifiedColName() + "," + MathModelTable.table.versionBranchID.getQualifiedColName() + "," + MathModelTable.table.versionDate.getQualifiedColName();
sql = new StringBuffer(MathModelTable.table.getInfoSQL(user, null, (enableSpecial ? special : null), dbSyntax));
sql.insert(7, Table.SQL_GLOBAL_HINT);
rset = stmt.executeQuery(sql.toString());
ArrayList<MathModelInfo> tempInfos = new ArrayList<MathModelInfo>();
Set<String> distinctV = new HashSet<String>();
while (rset.next()) {
MathModelInfo versionInfo = (MathModelInfo) MathModelTable.table.getInfo(rset, con, dbSyntax);
if (!distinctV.contains(versionInfo.getVersion().getVersionKey().toString())) {
tempInfos.add(versionInfo);
distinctV.add(versionInfo.getVersion().getVersionKey().toString());
}
}
rset.close();
if (tempInfos.size() > 0) {
mathModelInfos = new MathModelInfo[tempInfos.size()];
tempInfos.toArray(mathModelInfos);
}
if (lg.isInfoEnabled()) {
lg.info("MathModelInfo Time=" + (((double) System.currentTimeMillis() - beginTime) / (double) 1000));
}
}
//
// VCImageInfos
//
{
double beginTime = System.currentTimeMillis();
special = " ORDER BY " + ImageTable.table.name.getQualifiedColName() + "," + ImageTable.table.versionBranchID.getQualifiedColName() + "," + ImageTable.table.versionDate.getQualifiedColName();
sql = new StringBuffer(ImageTable.table.getInfoSQL(user, null, (enableSpecial ? special : null), true, dbSyntax));
sql.insert(7, Table.SQL_GLOBAL_HINT);
rset = stmt.executeQuery(sql.toString());
ArrayList<VCImageInfo> tempInfos = new ArrayList<VCImageInfo>();
Set<String> distinctV = new HashSet<String>();
while (rset.next()) {
VCImageInfo versionInfo = (VCImageInfo) ImageTable.table.getInfo(rset, con, dbSyntax);
if (!distinctV.contains(versionInfo.getVersion().getVersionKey().toString())) {
tempInfos.add(versionInfo);
distinctV.add(versionInfo.getVersion().getVersionKey().toString());
}
}
rset.close();
if (tempInfos.size() > 0) {
vcImageInfos = new VCImageInfo[tempInfos.size()];
tempInfos.toArray(vcImageInfos);
}
if (lg.isInfoEnabled()) {
lg.info("ImageInfo Time=" + (((double) System.currentTimeMillis() - beginTime) / (double) 1000));
}
}
//
// GeometeryInfos
//
{
double beginTime = System.currentTimeMillis();
special = " ORDER BY " + GeometryTable.table.name.getQualifiedColName() + "," + GeometryTable.table.versionBranchID.getQualifiedColName() + "," + GeometryTable.table.versionDate.getQualifiedColName();
sql = new StringBuffer(GeometryTable.table.getInfoSQL(user, null, (enableSpecial ? special : null), true, dbSyntax));
sql.insert(7, Table.SQL_GLOBAL_HINT + (enableDistinct ? "DISTINCT " : ""));
rset = stmt.executeQuery(sql.toString());
ArrayList<GeometryInfo> tempInfos = new ArrayList<GeometryInfo>();
Set<String> distinctV = new HashSet<String>();
while (rset.next()) {
GeometryInfo versionInfo = (GeometryInfo) GeometryTable.table.getInfo(rset, con);
if (!distinctV.contains(versionInfo.getVersion().getVersionKey().toString())) {
tempInfos.add(versionInfo);
distinctV.add(versionInfo.getVersion().getVersionKey().toString());
}
}
rset.close();
if (tempInfos.size() > 0) {
geometryInfos = new GeometryInfo[tempInfos.size()];
tempInfos.toArray(geometryInfos);
}
if (lg.isInfoEnabled()) {
lg.info("GeometryInfo Time=" + (((double) System.currentTimeMillis() - beginTime) / (double) 1000));
}
}
} finally {
if (stmt != null) {
stmt.close();
}
}
results = new VCInfoContainer(user, vcImageInfos, geometryInfos, mathModelInfos, bioModelInfos);
return results;
}
Also used :
ResultSet(java.sql.ResultSet)
Set(java.util.Set)
TreeSet(java.util.TreeSet)
HashSet(java.util.HashSet)
PreparedStatement(java.sql.PreparedStatement)
Statement(java.sql.Statement)
BioModelInfo(org.vcell.util.document.BioModelInfo)
ArrayList(java.util.ArrayList)
MathModelInfo(org.vcell.util.document.MathModelInfo)
VCInfoContainer(org.vcell.util.document.VCInfoContainer)
GeometryInfo(cbit.vcell.geometry.GeometryInfo)
ResultSet(java.sql.ResultSet)
VCImageInfo(cbit.image.VCImageInfo)
Example 65 with MathModelInfo
use of org.vcell.util.document.MathModelInfo in project vcell by virtualcell.
the class DbDriver method testSuiteOP.
/**
* Insert the method's description here.
* Creation date: (10/19/2004 6:55:36 AM)
* @return cbit.vcell.numericstest.TestSuiteNew
* @param tsop cbit.vcell.numericstest.TestSuiteOP
*/
public static TestSuiteOPResults testSuiteOP(TestSuiteOP tsop, Connection con, User user, KeyFactory keyFactory) throws SQLException, DataAccessException {
java.util.TreeSet<BigDecimal> changedTestSuiteKeys = new java.util.TreeSet<BigDecimal>();
String sql = null;
Statement stmt = null;
try {
if (tsop instanceof ModelGeometryOP) {
ModelGeometryOP modelGeometryOP = (ModelGeometryOP) tsop;
if (modelGeometryOP.getVCDocumentInfo() instanceof BioModelInfo) {
BioModelInfo bioModelInfo = (BioModelInfo) modelGeometryOP.getVCDocumentInfo();
sql = "SELECT " + SimContextTable.table.geometryRef.getQualifiedColName() + " FROM " + SimContextTable.table.getTableName() + "," + BioModelSimContextLinkTable.table.getTableName() + " WHERE " + SimContextTable.table.name.getQualifiedColName() + " = '" + modelGeometryOP.getBioModelApplicationName() + "'" + " AND " + BioModelSimContextLinkTable.table.simContextRef.getQualifiedColName() + " = " + SimContextTable.table.id.getQualifiedColName() + " AND " + BioModelSimContextLinkTable.table.bioModelRef.getQualifiedColName() + " = " + bioModelInfo.getVersion().getVersionKey().toString();
} else if (modelGeometryOP.getVCDocumentInfo() instanceof MathModelInfo) {
MathModelInfo mathModelInfo = (MathModelInfo) modelGeometryOP.getVCDocumentInfo();
sql = "SELECT " + MathDescTable.table.geometryRef.getQualifiedColName() + " FROM " + MathDescTable.table.getTableName() + "," + MathModelTable.table.getTableName() + " WHERE " + MathModelTable.table.id.getQualifiedColName() + " = " + mathModelInfo.getVersion().getVersionKey().toString() + " AND " + MathModelTable.table.mathRef.getQualifiedColName() + " = " + MathDescTable.table.id.getQualifiedColName();
} else {
throw new IllegalArgumentException("UnImplemented VCDocumentInfo type=" + modelGeometryOP.getVCDocumentInfo().getClass().getName());
}
stmt = con.createStatement();
ResultSet rset = stmt.executeQuery(sql);
BigDecimal geometryKey = null;
if (rset.next()) {
geometryKey = rset.getBigDecimal(1);
if (rset.next()) {
throw new DataAccessException("Expecting only 1 Geometry but found at least 2");
}
} else {
throw new DataAccessException("No Geometry found using criteria");
}
rset.close();
stmt.close();
return new ModelGeometryOPResults(new KeyValue(geometryKey));
} else //
if (tsop instanceof LoadTestInfoOP) {
//
if (((LoadTestInfoOP) tsop).getLoadTestOpFlag() == LoadTestOpFlag.delete) {
// Delete before return details
LoadTestSoftwareVersionTimeStamp[] deleteTheseVersTimeStamps = ((LoadTestInfoOP) tsop).getLoadTestSoftwareVersionTimeStamps();
for (int i = 0; i < deleteTheseVersTimeStamps.length; i++) {
sql = "DELETE FROM " + LoadModelsStatTable.table.getTableName() + " WHERE " + LoadModelsStatTable.table.softwareVers + " = " + "'" + deleteTheseVersTimeStamps[i].getSoftwareVersion() + "'" + " AND " + LoadModelsStatTable.table.timeStamp + " = " + "'" + deleteTheseVersTimeStamps[i].getRunTimeStamp() + "'";
DbDriver.updateCleanSQL(con, sql);
}
return null;
}
// Check if Date info is requested
if (((LoadTestInfoOP) tsop).getLoadTestOpFlag() == LoadTestOpFlag.info && ((LoadTestInfoOP) tsop).getBeginDate() != null) {
final String YMD_FORMAT_STRING = "yyyy-MM-dd";
SimpleDateFormat simpleDateFormat = new SimpleDateFormat(YMD_FORMAT_STRING);
final String BETWEEN_CONDITION = " BETWEEN " + " TO_DATE('" + simpleDateFormat.format(((LoadTestInfoOP) tsop).getBeginDate()) + " 00:00:00', '" + YMD_FORMAT_STRING + " HH24:MI:SS') " + " AND " + " TO_DATE('" + simpleDateFormat.format(((LoadTestInfoOP) tsop).getEndDate()) + " 23:59:59', '" + YMD_FORMAT_STRING + " HH24:MI:SS') ";
sql = "SELECT " + BioModelTable.table.id.getQualifiedColName() + "," + UserTable.table.userid.getUnqualifiedColName() + " FROM " + BioModelTable.table.getTableName() + "," + UserTable.table.getTableName() + " WHERE " + UserTable.table.id.getQualifiedColName() + " = " + BioModelTable.table.ownerRef.getQualifiedColName() + " AND " + BioModelTable.table.versionDate.getQualifiedColName() + BETWEEN_CONDITION + " UNION " + "SELECT " + MathModelTable.table.id.getQualifiedColName() + "," + UserTable.table.userid.getUnqualifiedColName() + " FROM " + MathModelTable.table.getTableName() + "," + UserTable.table.getTableName() + " WHERE " + UserTable.table.id.getQualifiedColName() + " = " + MathModelTable.table.ownerRef.getQualifiedColName() + " AND " + MathModelTable.table.versionDate.getQualifiedColName() + BETWEEN_CONDITION;
stmt = con.createStatement();
ResultSet rset = stmt.executeQuery(sql);
TreeSet<String> uniqueUserIDTreeSet = new TreeSet<String>();
Vector<KeyValue> keyValuesBetweenDatesV = new Vector<KeyValue>();
while (rset.next()) {
uniqueUserIDTreeSet.add(rset.getString(UserTable.table.userid.getUnqualifiedColName()));
keyValuesBetweenDatesV.add(new KeyValue(rset.getBigDecimal(1)));
}
rset.close();
stmt.close();
return new LoadTestInfoOpResults(((LoadTestInfoOP) tsop).getBeginDate(), ((LoadTestInfoOP) tsop).getEndDate(), keyValuesBetweenDatesV.toArray(new KeyValue[0]), uniqueUserIDTreeSet.toArray(new String[0]));
}
//
// Get LoadTest Info
//
// Get existing SoftwareVersion-Timestamp count
//
Vector<Integer> loadTestInfoCountV = new Vector<Integer>();
stmt = con.createStatement();
sql = "SELECT COUNT(*)," + LoadModelsStatTable.table.softwareVers.getUnqualifiedColName() + "," + LoadModelsStatTable.table.timeStamp.getUnqualifiedColName() + " FROM " + LoadModelsStatTable.table.getTableName() + " GROUP BY " + LoadModelsStatTable.table.softwareVers.getUnqualifiedColName() + "," + LoadModelsStatTable.table.timeStamp.getUnqualifiedColName();
Vector<LoadTestInfoOpResults.LoadTestSoftwareVersionTimeStamp> loadTestSoftwareVersionTimeStampsExistingV = new Vector<LoadTestInfoOpResults.LoadTestSoftwareVersionTimeStamp>();
ResultSet rset = stmt.executeQuery(sql);
while (rset.next()) {
String softwareVersion = TokenMangler.getSQLRestoredString(rset.getString(LoadModelsStatTable.table.softwareVers.getUnqualifiedColName()));
String runTimeStamp = rset.getString(LoadModelsStatTable.table.timeStamp.getUnqualifiedColName());
loadTestSoftwareVersionTimeStampsExistingV.add(new LoadTestInfoOpResults.LoadTestSoftwareVersionTimeStamp(softwareVersion, runTimeStamp));
loadTestInfoCountV.add(rset.getInt(1));
}
rset.close();
stmt.close();
//
// Get empty test info count (models that haven't been checked yet during a test run)
//
stmt = con.createStatement();
sql = "SELECT COUNT(*)," + LoadModelsStatTable.table.softwareVers.getUnqualifiedColName() + "," + LoadModelsStatTable.table.timeStamp.getUnqualifiedColName() + " FROM " + LoadModelsStatTable.table.getTableName() + " WHERE " + LoadModelsStatTable.table.resultFlag.getUnqualifiedColName() + " IS NULL" + " GROUP BY " + LoadModelsStatTable.table.softwareVers.getUnqualifiedColName() + "," + LoadModelsStatTable.table.timeStamp.getUnqualifiedColName();
Vector<LoadTestInfoOpResults.LoadTestSoftwareVersionTimeStamp> loadTestSoftwareVersionTimeStampsEmptyV = new Vector<LoadTestInfoOpResults.LoadTestSoftwareVersionTimeStamp>();
rset = stmt.executeQuery(sql);
Integer[] loadTestInfoCountEmptyArr = new Integer[loadTestInfoCountV.size()];
while (rset.next()) {
String softwareVersion = TokenMangler.getSQLRestoredString(rset.getString(LoadModelsStatTable.table.softwareVers.getUnqualifiedColName()));
String runTimeStamp = rset.getString(LoadModelsStatTable.table.timeStamp.getUnqualifiedColName());
loadTestSoftwareVersionTimeStampsEmptyV.add(new LoadTestInfoOpResults.LoadTestSoftwareVersionTimeStamp(softwareVersion, runTimeStamp));
// match to existing array index so full and empty match
for (int i = 0; i < loadTestSoftwareVersionTimeStampsExistingV.size(); i++) {
if (loadTestSoftwareVersionTimeStampsExistingV.elementAt(i).getSoftwareVersion().equals(softwareVersion) && loadTestSoftwareVersionTimeStampsExistingV.elementAt(i).getRunTimeStamp().equals(runTimeStamp)) {
loadTestInfoCountEmptyArr[i] = rset.getInt(1);
}
}
}
rset.close();
stmt.close();
//
// Get total Math and Bio model count
//
int totalBioMathModelCount = 0;
stmt = con.createStatement();
sql = "SELECT COUNT(*) FROM " + BioModelTable.table.getTableName() + " UNION " + "SELECT COUNT(*) FROM " + MathModelTable.table.getTableName();
rset = stmt.executeQuery(sql);
if (rset.next()) {
totalBioMathModelCount = rset.getInt(1);
if (rset.next()) {
totalBioMathModelCount += rset.getInt(1);
} else {
totalBioMathModelCount = 0;
}
}
if (totalBioMathModelCount == 0) {
throw new DataAccessException("No results when querying bio and Mathmodel count");
}
rset.close();
stmt.close();
//
// Get slow Loads
//
Object loadTestSlowHash = null;
if (((LoadTestInfoOP) tsop).getSlowLoadThresholdMilliSec() != null) {
Integer slowLoaderThreshold = ((LoadTestInfoOP) tsop).getSlowLoadThresholdMilliSec();
loadTestSlowHash = getLoadTestDetails(con, slowLoaderThreshold, null);
}
//
// Get failed loads
//
Object loadTestFailHash = getLoadTestDetails(con, null, null);
//
// Get user specified query info.
//
Object loadTestUserQueryHash = null;
if (((LoadTestInfoOP) tsop).getUserQueryCondition() != null) {
loadTestUserQueryHash = getLoadTestDetails(con, null, ((LoadTestInfoOP) tsop).getUserQueryCondition());
}
return new LoadTestInfoOpResults(loadTestInfoCountV.toArray(new Integer[0]), loadTestInfoCountEmptyArr, totalBioMathModelCount, loadTestSoftwareVersionTimeStampsExistingV.toArray(new LoadTestInfoOpResults.LoadTestSoftwareVersionTimeStamp[0]), (Hashtable<LoadTestInfoOpResults.LoadTestSoftwareVersionTimeStamp, Vector<LoadTestInfoOpResults.LoadTestFailDetails>>) loadTestFailHash, (Hashtable<LoadTestInfoOpResults.LoadTestSoftwareVersionTimeStamp, Vector<LoadTestInfoOpResults.LoadTestSlowDetails>>) loadTestSlowHash, (Hashtable<LoadTestInfoOpResults.LoadTestSoftwareVersionTimeStamp, Vector<LoadTestInfoOpResults.LoadTestDetails>>) loadTestUserQueryHash, ((LoadTestInfoOP) tsop).getSlowLoadThresholdMilliSec());
}
//
// TestSuite operations ---------------------------------------------------------------------------------------------------
//
stmt = con.createStatement();
if (tsop instanceof AddTestSuiteOP) {
AddTestSuiteOP addts_tsop = (AddTestSuiteOP) tsop;
String annotation = addts_tsop.getTestSuiteAnnotation();
if (annotation != null) {
if (annotation.length() == 0) {
annotation = null;
} else {
annotation = TokenMangler.getSQLEscapedString(annotation);
}
}
BigDecimal changedTSKey = keyFactory.getUniqueBigDecimal(con);
final int NOT_LOCKED = 0;
sql = "INSERT INTO " + TFTestSuiteTable.table.getTableName() + " VALUES(" + changedTSKey + ",'" + addts_tsop.getTestSuiteVersionID() + "'," + "'" + addts_tsop.getVCellBuildVersionID() + "'" + "," + "'" + addts_tsop.getNumericsBuildVersionID() + "'" + "," + "current_timestamp,current_timestamp," + (annotation == null ? "NULL" : "'" + annotation + "'") + "," + NOT_LOCKED + ")";
stmt.executeUpdate(sql);
if (addts_tsop.getAddTestCasesOPs() != null) {
for (int i = 0; i < addts_tsop.getAddTestCasesOPs().length; i += 1) {
// Set new TSKey and do child OPs
AddTestCasesOP atcOP = addts_tsop.getAddTestCasesOPs()[i];
if (atcOP instanceof AddTestCasesOPMathModel) {
testSuiteOP(new AddTestCasesOPMathModel(changedTSKey, ((AddTestCasesOPMathModel) atcOP).getMathModelKey(), atcOP.getTestCaseType(), atcOP.getAnnotation(), ((AddTestCasesOPMathModel) atcOP).getAddTestCriteriaOPsMathModel()), con, user, keyFactory);
} else if (atcOP instanceof AddTestCasesOPBioModel) {
testSuiteOP(new AddTestCasesOPBioModel(changedTSKey, ((AddTestCasesOPBioModel) atcOP).getBioModelKey(), ((AddTestCasesOPBioModel) atcOP).getSimContextKey(), atcOP.getTestCaseType(), atcOP.getAnnotation(), ((AddTestCasesOPBioModel) atcOP).getAddTestCriteriaOPsBioModel()), con, user, keyFactory);
}
}
}
changedTestSuiteKeys.add(changedTSKey);
} else if (tsop instanceof AddTestCasesOPBioModel) {
AddTestCasesOPBioModel addtc_tsop = (AddTestCasesOPBioModel) tsop;
//
BigDecimal bmSimContextLinkRef = null;
// Convert BioModelKey and SimContextKey to bmsimcontext key
sql = "SELECT " + BioModelSimContextLinkTable.table.id.getQualifiedColName() + " FROM " + BioModelSimContextLinkTable.table.getTableName() + " WHERE " + BioModelSimContextLinkTable.table.bioModelRef.getQualifiedColName() + "=" + addtc_tsop.getBioModelKey().toString() + " AND " + BioModelSimContextLinkTable.table.simContextRef.getQualifiedColName() + "=" + addtc_tsop.getSimContextKey().toString();
ResultSet rset = stmt.executeQuery(sql);
if (rset.next()) {
bmSimContextLinkRef = rset.getBigDecimal(BioModelSimContextLinkTable.table.id.getUnqualifiedColName());
if (rset.next()) {
throw new DataAccessException("Too many MathModelSimLink found for bmKey=" + addtc_tsop.getBioModelKey() + " simContextKey=" + addtc_tsop.getSimContextKey());
}
} else {
throw new DataAccessException("No BioModelSimcontextLink found for bmKey=" + addtc_tsop.getBioModelKey() + " simContextKey=" + addtc_tsop.getSimContextKey());
}
rset.close();
//
BigDecimal tcKey = keyFactory.getUniqueBigDecimal(con);
String annotation = addtc_tsop.getAnnotation();
if (annotation != null) {
annotation = TokenMangler.getSQLEscapedString(annotation);
}
stmt.executeUpdate("INSERT INTO " + TFTestCaseTable.table.getTableName() + " VALUES(" + tcKey.toString() + "," + addtc_tsop.getTestSuiteKey().toString() + ",NULL," + "'" + addtc_tsop.getTestCaseType() + "'" + "," + "'" + annotation + "'" + "," + "current_timestamp" + "," + bmSimContextLinkRef.toString() + ")");
if (addtc_tsop.getAddTestCriteriaOPsBioModel() != null) {
for (int i = 0; i < addtc_tsop.getAddTestCriteriaOPsBioModel().length; i += 1) {
// Set new TSKey,TCaseKey and do child OPs
AddTestCriteriaOPBioModel atcritOP = addtc_tsop.getAddTestCriteriaOPsBioModel()[i];
testSuiteOP(new AddTestCriteriaOPBioModel(tcKey, atcritOP.getBioModelSimKey(), atcritOP.getRegressionBioModelKey(), atcritOP.getRegressionBioModelSimKey(), atcritOP.getMaxAbsoluteError(), atcritOP.getMaxRelativeError(), atcritOP.getAddTestResultsOP()), con, user, keyFactory);
}
}
changedTestSuiteKeys.add(addtc_tsop.getTestSuiteKey());
} else if (tsop instanceof AddTestCasesOPMathModel) {
AddTestCasesOPMathModel addtc_tsop = (AddTestCasesOPMathModel) tsop;
BigDecimal tcKey = keyFactory.getUniqueBigDecimal(con);
KeyValue mmKey = addtc_tsop.getMathModelKey();
String annotation = addtc_tsop.getAnnotation();
if (annotation != null) {
annotation = TokenMangler.getSQLEscapedString(annotation);
}
stmt.executeUpdate("INSERT INTO " + TFTestCaseTable.table.getTableName() + " VALUES(" + tcKey.toString() + "," + addtc_tsop.getTestSuiteKey().toString() + "," + mmKey.toString() + "," + "'" + addtc_tsop.getTestCaseType() + "'" + "," + "'" + annotation + "'" + "," + "current_timestamp" + ",NULL)");
if (addtc_tsop.getAddTestCriteriaOPsMathModel() != null) {
for (int i = 0; i < addtc_tsop.getAddTestCriteriaOPsMathModel().length; i += 1) {
// Set new TSKey,TCaseKey and do child OPs
AddTestCriteriaOPMathModel atcritOP = addtc_tsop.getAddTestCriteriaOPsMathModel()[i];
testSuiteOP(new AddTestCriteriaOPMathModel(tcKey, atcritOP.getMathModelSimKey(), atcritOP.getRegressionMathModelKey(), atcritOP.getRegressionMathModelSimKey(), atcritOP.getMaxAbsoluteError(), atcritOP.getMaxRelativeError(), atcritOP.getAddTestResultsOP()), con, user, keyFactory);
}
}
changedTestSuiteKeys.add(addtc_tsop.getTestSuiteKey());
} else if (tsop instanceof RemoveTestCasesOP) {
RemoveTestCasesOP removetc_tsop = (RemoveTestCasesOP) tsop;
StringBuffer sb = new StringBuffer();
for (int i = 0; i < removetc_tsop.getTestCasesKeys().length; i += 1) {
if (i != 0) {
sb.append(",");
}
sb.append(removetc_tsop.getTestCasesKeys()[i].toString());
}
ResultSet rset = stmt.executeQuery("SELECT DISTINCT " + TFTestSuiteTable.table.id.getQualifiedColName() + " FROM " + TFTestSuiteTable.table.getTableName() + "," + TFTestCaseTable.table.getTableName() + " WHERE " + TFTestCaseTable.table.id.getQualifiedColName() + " IN (" + sb.toString() + ")" + " AND " + TFTestCaseTable.table.testSuiteRef.getQualifiedColName() + "=" + TFTestSuiteTable.table.id.getQualifiedColName());
while (rset.next()) {
changedTestSuiteKeys.add(rset.getBigDecimal(TFTestSuiteTable.table.id.getUnqualifiedColName()));
}
rset.close();
int numRowsUpdated = stmt.executeUpdate("DELETE FROM " + TFTestCaseTable.table.getTableName() + " WHERE " + TFTestCaseTable.table.id.getUnqualifiedColName() + " IN (" + sb.toString() + ")");
if (numRowsUpdated != removetc_tsop.getTestCasesKeys().length) {
throw new DataAccessException("Remove TestCase keys=" + sb.toString() + " from TSKey=" + removetc_tsop.getTestSuiteKey() + " removed row count=" + numRowsUpdated + " expected " + removetc_tsop.getTestCasesKeys().length);
}
} else if (tsop instanceof AddTestCriteriaOPMathModel) {
AddTestCriteriaOPMathModel addtcrit_tsop = (AddTestCriteriaOPMathModel) tsop;
BigDecimal tcritKey = keyFactory.getUniqueBigDecimal(con);
BigDecimal tcKey = addtcrit_tsop.getTestCaseKey();
KeyValue simKey = addtcrit_tsop.getMathModelSimKey();
// Check that there is a single mathmodel associated with simkey and parentsimref is null
sql = "SELECT " + MathModelSimulationLinkTable.table.id.getQualifiedColName() + " FROM " + MathModelSimulationLinkTable.table.getTableName() + "," + SimulationTable.table.getTableName() + " WHERE " + MathModelSimulationLinkTable.table.simRef.getQualifiedColName() + "=" + simKey.toString() + " AND " + MathModelSimulationLinkTable.table.simRef.getQualifiedColName() + "=" + SimulationTable.table.id.getQualifiedColName() + " AND " + SimulationTable.table.getTableName() + "." + SimulationTable.versionParentSimRef_ColumnName + " IS NULL";
ResultSet rset = stmt.executeQuery(sql);
if (rset.next()) {
if (rset.next()) {
throw new DataAccessException("Too many MathModelSimulationLink found for simKey=" + simKey);
}
} else {
throw new DataAccessException("No MathModelSimulationLink found for simKey=" + simKey);
}
rset.close();
// //
// //Make sure TestCase type and regressionRef match
// sql = "SELECT "+TFTestCaseTable.table.id.getQualifiedColName()+
// " FROM "+TFTestCaseTable.table.getTableName()+
// " WHERE "+
// TFTestCaseTable.table.id.getQualifiedColName()+"="+tcKey.toString()+
// " AND "+
// TFTestCaseTable.table.tcSolutionType.getQualifiedColName()+
// (regrSimKey != null?"=":"!=")+
// "'"+cbit.vcell.numericstest.TestCaseNew.REGRESSION+"'";
// rset = stmt.executeQuery(sql);
// if(!rset.next()){
// throw new DataAccessException("TestCase type not compatible with regressionSimKey");
// }
// rset.close();
//
//
// Get simDataRef from simKey
BigDecimal simDataRef = null;
// sql =
// "SELECT "+ResultSetMetaDataTable.table.id.getQualifiedColName()+
// " FROM " +ResultSetMetaDataTable.table.getTableName()+
// " WHERE "+
// ResultSetMetaDataTable.table.simRef.getQualifiedColName()+"="+simKey.toString();
// rset = stmt.executeQuery(sql);
// if(rset.next()){
// simDataRef = rset.getBigDecimal(MathModelSimulationLinkTable.table.id.getUnqualifiedColName());
// if(rset.next()){
// throw new DataAccessException("Too many ResultSetMetaData found for simKey="+simKey);
// }
// }
// else{
// throw new DataAccessException("No ResultSetMetaData found for simKey="+simKey);
// }
rset.close();
//
// Insert TestCriteria
sql = "INSERT INTO " + TFTestCriteriaTable.table.getTableName() + " VALUES(" + tcritKey.toString() + "," + tcKey.toString() + "," + simKey.toString() + "," + (simDataRef != null ? simDataRef.toString() : null) + "," + "NULL" + "," + (addtcrit_tsop.getMaxRelativeError() != null ? "TO_NUMBER('" + addtcrit_tsop.getMaxRelativeError().toString() + "')" : "null") + "," + (addtcrit_tsop.getMaxAbsoluteError() != null ? "TO_NUMBER('" + addtcrit_tsop.getMaxAbsoluteError().toString() + "')" : "null") + "," + "NULL,NULL," + "'" + TestCriteriaNew.TCRIT_STATUS_NEEDSREPORT + "'" + ",null" + ")";
stmt.executeUpdate(sql);
if (addtcrit_tsop.getRegressionMathModelSimKey() != null) {
testSuiteOP(new EditTestCriteriaOPMathModel(tcritKey, addtcrit_tsop.getRegressionMathModelKey(), addtcrit_tsop.getRegressionMathModelSimKey(), addtcrit_tsop.getMaxAbsoluteError(), addtcrit_tsop.getMaxRelativeError()), con, user, keyFactory);
}
if (addtcrit_tsop.getAddTestResultsOP() != null) {
AddTestResultsOP atrOP = addtcrit_tsop.getAddTestResultsOP();
// Set new TSKey,TCritKey and do child OPs
testSuiteOP(new AddTestResultsOP(tcritKey, atrOP.getVariableComparisonSummaries()), con, user, keyFactory);
}
rset = stmt.executeQuery("SELECT DISTINCT " + TFTestSuiteTable.table.id.getQualifiedColName() + " FROM " + TFTestSuiteTable.table.getTableName() + "," + TFTestCaseTable.table.getTableName() + "," + TFTestCriteriaTable.table.getTableName() + " WHERE " + TFTestCaseTable.table.id.getQualifiedColName() + "=" + TFTestCriteriaTable.table.testCaseRef.getQualifiedColName() + " AND " + TFTestCriteriaTable.table.id.getQualifiedColName() + "=" + tcritKey.toString() + " AND " + TFTestCaseTable.table.testSuiteRef.getQualifiedColName() + "=" + TFTestSuiteTable.table.id.getQualifiedColName());
while (rset.next()) {
changedTestSuiteKeys.add(rset.getBigDecimal(TFTestSuiteTable.table.id.getUnqualifiedColName()));
}
rset.close();
} else if (tsop instanceof AddTestCriteriaOPBioModel) {
AddTestCriteriaOPBioModel addtcrit_tsop = (AddTestCriteriaOPBioModel) tsop;
BigDecimal tcritKey = keyFactory.getUniqueBigDecimal(con);
BigDecimal tcKey = addtcrit_tsop.getTestCaseKey();
KeyValue simKey = addtcrit_tsop.getBioModelSimKey();
// Check that there is a single biomodel associated with simkey and parentsimref is null
sql = "SELECT " + BioModelSimulationLinkTable.table.id.getQualifiedColName() + " FROM " + BioModelSimulationLinkTable.table.getTableName() + "," + SimulationTable.table.getTableName() + " WHERE " + BioModelSimulationLinkTable.table.simRef.getQualifiedColName() + "=" + simKey.toString() + " AND " + BioModelSimulationLinkTable.table.simRef.getQualifiedColName() + "=" + SimulationTable.table.id.getQualifiedColName() + " AND " + SimulationTable.table.getTableName() + "." + SimulationTable.versionParentSimRef_ColumnName + " IS NULL";
ResultSet rset = stmt.executeQuery(sql);
if (rset.next()) {
if (rset.next()) {
throw new DataAccessException("Too many BioModelSimulationLink found for simKey=" + simKey);
}
} else {
throw new DataAccessException("No BioModelSimulationLink found for simKey=" + simKey);
}
rset.close();
// //
// //Make sure TestCase type and regressionRef match
// sql = "SELECT "+TFTestCaseTable.table.id.getQualifiedColName()+
// " FROM "+TFTestCaseTable.table.getTableName()+
// " WHERE "+
// TFTestCaseTable.table.id.getQualifiedColName()+"="+tcKey.toString()+
// " AND "+
// TFTestCaseTable.table.tcSolutionType.getQualifiedColName()+
// (regrSimKey != null?"=":"!=")+
// "'"+cbit.vcell.numericstest.TestCaseNew.REGRESSION+"'";
// rset = stmt.executeQuery(sql);
// if(!rset.next()){
// throw new DataAccessException("TestCase type not compatible with regressionSimKey");
// }
// rset.close();
//
//
// Get simDataRef from simKey
BigDecimal simDataRef = null;
// sql =
// "SELECT "+ResultSetMetaDataTable.table.id.getQualifiedColName()+
// " FROM " +ResultSetMetaDataTable.table.getTableName()+
// " WHERE "+
// ResultSetMetaDataTable.table.simRef.getQualifiedColName()+"="+simKey.toString();
// rset = stmt.executeQuery(sql);
// if(rset.next()){
// simDataRef = rset.getBigDecimal(BioModelSimulationLinkTable.table.id.getUnqualifiedColName());
// if(rset.next()){
// throw new DataAccessException("Too many ResultSetMetaData found for simKey="+simKey);
// }
// }
// else{
// throw new DataAccessException("No ResultSetMetaData found for simKey="+simKey);
// }
rset.close();
//
// Insert TestCriteria
sql = "INSERT INTO " + TFTestCriteriaTable.table.getTableName() + " VALUES(" + tcritKey.toString() + "," + tcKey.toString() + "," + simKey.toString() + "," + (simDataRef != null ? simDataRef.toString() : null) + "," + "null" + "," + (addtcrit_tsop.getMaxRelativeError() != null ? "TO_NUMBER('" + addtcrit_tsop.getMaxRelativeError().toString() + "')" : "null") + "," + (addtcrit_tsop.getMaxAbsoluteError() != null ? "TO_NUMBER('" + addtcrit_tsop.getMaxAbsoluteError().toString() + "')" : "null") + "," + "NULL,NULL," + "'" + TestCriteriaNew.TCRIT_STATUS_NEEDSREPORT + "'" + ",null" + ")";
stmt.executeUpdate(sql);
if (addtcrit_tsop.getRegressionBioModelSimKey() != null) {
testSuiteOP(new EditTestCriteriaOPBioModel(tcritKey, addtcrit_tsop.getRegressionBioModelKey(), addtcrit_tsop.getRegressionBioModelSimKey(), addtcrit_tsop.getMaxAbsoluteError(), addtcrit_tsop.getMaxRelativeError()), con, user, keyFactory);
}
if (addtcrit_tsop.getAddTestResultsOP() != null) {
AddTestResultsOP atrOP = addtcrit_tsop.getAddTestResultsOP();
// Set new TSKey,TCritKey and do child OPs
testSuiteOP(new AddTestResultsOP(tcritKey, atrOP.getVariableComparisonSummaries()), con, user, keyFactory);
}
rset = stmt.executeQuery("SELECT DISTINCT " + TFTestSuiteTable.table.id.getQualifiedColName() + " FROM " + TFTestSuiteTable.table.getTableName() + "," + TFTestCaseTable.table.getTableName() + "," + TFTestCriteriaTable.table.getTableName() + " WHERE " + TFTestCaseTable.table.id.getQualifiedColName() + "=" + TFTestCriteriaTable.table.testCaseRef.getQualifiedColName() + " AND " + TFTestCriteriaTable.table.id.getQualifiedColName() + "=" + tcritKey.toString() + " AND " + TFTestCaseTable.table.testSuiteRef.getQualifiedColName() + "=" + TFTestSuiteTable.table.id.getQualifiedColName());
while (rset.next()) {
changedTestSuiteKeys.add(rset.getBigDecimal(TFTestSuiteTable.table.id.getUnqualifiedColName()));
}
rset.close();
} else if (tsop instanceof RemoveTestCriteriaOP) {
RemoveTestCriteriaOP removetcrit_tsop = (RemoveTestCriteriaOP) tsop;
StringBuffer sb = new StringBuffer();
for (int i = 0; i < removetcrit_tsop.getTestCriterias().length; i += 1) {
if (i != 0) {
sb.append(",");
}
sb.append(removetcrit_tsop.getTestCriterias()[i].getTCritKey().toString());
}
ResultSet rset = stmt.executeQuery("SELECT DISTINCT " + TFTestSuiteTable.table.id.getQualifiedColName() + " FROM " + TFTestSuiteTable.table.getTableName() + "," + TFTestCaseTable.table.getTableName() + "," + TFTestCriteriaTable.table.getTableName() + " WHERE " + TFTestCaseTable.table.id.getQualifiedColName() + "=" + TFTestCriteriaTable.table.testCaseRef.getQualifiedColName() + " AND " + TFTestCriteriaTable.table.id.getQualifiedColName() + " IN (" + sb.toString() + ")" + " AND " + TFTestCaseTable.table.testSuiteRef.getQualifiedColName() + "=" + TFTestSuiteTable.table.id.getQualifiedColName());
while (rset.next()) {
changedTestSuiteKeys.add(rset.getBigDecimal(TFTestSuiteTable.table.id.getUnqualifiedColName()));
}
rset.close();
int numRowsUpdated = stmt.executeUpdate("DELETE FROM " + TFTestCriteriaTable.table.getTableName() + " WHERE " + TFTestCriteriaTable.table.id.getUnqualifiedColName() + " IN (" + sb.toString() + ")");
if (numRowsUpdated != removetcrit_tsop.getTestCriterias().length) {
throw new DataAccessException("Remove TestCriteria keys=" + sb.toString() + " removed row count=" + numRowsUpdated + " expected " + removetcrit_tsop.getTestCriterias().length);
}
} else if (tsop instanceof RemoveTestSuiteOP) {
RemoveTestSuiteOP removets_tsop = (RemoveTestSuiteOP) tsop;
int numRowsUpdated = stmt.executeUpdate("DELETE FROM " + TFTestSuiteTable.table.getTableName() + " WHERE " + TFTestSuiteTable.table.id.getUnqualifiedColName() + "=" + removets_tsop.getTestSuiteKey().toString());
if (numRowsUpdated != 1) {
throw new DataAccessException("Remove SINGLE TestSuite - key=" + removets_tsop.getTestSuiteKey().toString() + " removed row count=" + numRowsUpdated);
}
changedTestSuiteKeys.add(removets_tsop.getTestSuiteKey());
} else if (tsop instanceof AddTestResultsOP) {
AddTestResultsOP addtr_tsop = (AddTestResultsOP) tsop;
VariableComparisonSummary[] vcs = addtr_tsop.getVariableComparisonSummaries();
if (vcs == null || vcs.length == 0) {
throw new DataAccessException(RemoveTestCasesOP.class.getName() + " had no TestResults");
}
for (int i = 0; i < vcs.length; i += 1) {
if (vcs[i] == null) {
throw new DataAccessException(RemoveTestCasesOP.class.getName() + " Array element was null");
}
}
ResultSet rset = stmt.executeQuery("SELECT " + TFTestResultTable.table.id.getUnqualifiedColName() + " FROM " + TFTestResultTable.table.getTableName() + " WHERE " + TFTestResultTable.table.testCriteriaRef.getUnqualifiedColName() + "=" + addtr_tsop.getTestCriteriaKey().toString());
if (rset.next()) {
throw new DataAccessException("AddTestResultsOP Criteria key=" + addtr_tsop.getTestCriteriaKey() + " has results");
}
rset.close();
for (int i = 0; i < vcs.length; i += 1) {
sql = "INSERT INTO " + TFTestResultTable.table.getTableName() + " VALUES(" + "NEWSEQ.NEXTVAL" + "," + addtr_tsop.getTestCriteriaKey().toString() + "," + "'" + vcs[i].getName() + "'" + "," + "TO_NUMBER('" + vcs[i].getAbsoluteError() + "')" + "," + "TO_NUMBER('" + vcs[i].getRelativeError() + "')" + "," + "TO_NUMBER('" + vcs[i].getMaxRef() + "')" + "," + "TO_NUMBER('" + vcs[i].getMinRef() + "')" + "," + "TO_NUMBER('" + vcs[i].getMeanSqError() + "')" + "," + "TO_NUMBER('" + vcs[i].getTimeAbsoluteError() + "')" + "," + "TO_NUMBER('" + vcs[i].getIndexAbsoluteError() + "')" + "," + "TO_NUMBER('" + vcs[i].getTimeRelativeError() + "')" + "," + "TO_NUMBER('" + vcs[i].getIndexRelativeError() + "')" + ")";
stmt.executeUpdate(sql);
}
rset = stmt.executeQuery("SELECT DISTINCT " + TFTestSuiteTable.table.id.getQualifiedColName() + " FROM " + TFTestSuiteTable.table.getTableName() + "," + TFTestCaseTable.table.getTableName() + "," + TFTestCriteriaTable.table.getTableName() + " WHERE " + TFTestCaseTable.table.id.getQualifiedColName() + "=" + TFTestCriteriaTable.table.testCaseRef.getQualifiedColName() + " AND " + TFTestCriteriaTable.table.id.getQualifiedColName() + "=" + addtr_tsop.getTestCriteriaKey().toString() + " AND " + TFTestCaseTable.table.testSuiteRef.getQualifiedColName() + "=" + TFTestSuiteTable.table.id.getQualifiedColName());
while (rset.next()) {
changedTestSuiteKeys.add(rset.getBigDecimal(TFTestSuiteTable.table.id.getUnqualifiedColName()));
}
rset.close();
} else if (tsop instanceof RemoveTestResultsOP) {
RemoveTestResultsOP removetr_tsop = (RemoveTestResultsOP) tsop;
StringBuffer sb = new StringBuffer();
for (int i = 0; i < removetr_tsop.getTestCriteriaKeys().length; i += 1) {
if (i != 0) {
sb.append(",");
}
sb.append(removetr_tsop.getTestCriteriaKeys()[i].toString());
stmt.executeUpdate("DELETE FROM " + TFTestResultTable.table.getTableName() + " WHERE " + TFTestResultTable.table.testCriteriaRef.getUnqualifiedColName() + "=" + removetr_tsop.getTestCriteriaKeys()[i].toString());
}
ResultSet rset = stmt.executeQuery("SELECT DISTINCT " + TFTestSuiteTable.table.id.getQualifiedColName() + " FROM " + TFTestSuiteTable.table.getTableName() + "," + TFTestCaseTable.table.getTableName() + "," + TFTestCriteriaTable.table.getTableName() + " WHERE " + TFTestCaseTable.table.id.getQualifiedColName() + "=" + TFTestCriteriaTable.table.testCaseRef.getQualifiedColName() + " AND " + TFTestCriteriaTable.table.id.getQualifiedColName() + " IN (" + sb.toString() + ")" + " AND " + TFTestCaseTable.table.testSuiteRef.getQualifiedColName() + "=" + TFTestSuiteTable.table.id.getQualifiedColName());
while (rset.next()) {
changedTestSuiteKeys.add(rset.getBigDecimal(TFTestSuiteTable.table.id.getUnqualifiedColName()));
}
rset.close();
} else if (tsop instanceof EditTestCriteriaOPReportStatus) {
EditTestCriteriaOPReportStatus edittcrit_tsop = (EditTestCriteriaOPReportStatus) tsop;
BigDecimal tcritKey = edittcrit_tsop.getTestCriteriaKey();
if (tcritKey == null) {
throw new DataAccessException(tsop.getClass().getName() + " had no TestCriteria keys");
}
String newRS = edittcrit_tsop.getNewReportStatus();
if (newRS == null || (!newRS.equals(TestCriteriaNew.TCRIT_STATUS_NEEDSREPORT) && !newRS.equals(TestCriteriaNew.TCRIT_STATUS_FAILEDVARS) && !newRS.equals(TestCriteriaNew.TCRIT_STATUS_NODATA) && !newRS.equals(TestCriteriaNew.TCRIT_STATUS_NOREFREGR) && !newRS.equals(TestCriteriaNew.TCRIT_STATUS_PASSED) && !newRS.equals(TestCriteriaNew.TCRIT_STATUS_RPERROR) && !newRS.equals(TestCriteriaNew.TCRIT_STATUS_SIMFAILED) && !newRS.equals(TestCriteriaNew.TCRIT_STATUS_SIMRUNNING) && !newRS.equals(TestCriteriaNew.TCRIT_STATUS_SIMNOTRUNFAILDONE))) {
throw new DataAccessException("Unsupported ReportStatus=" + edittcrit_tsop.getNewReportStatus());
}
String reportStatusMessage = edittcrit_tsop.getNewReportStatusMessage();
if (reportStatusMessage != null) {
reportStatusMessage = TokenMangler.getSQLEscapedString(reportStatusMessage);
reportStatusMessage = reportStatusMessage.substring(0, Math.min(TFTestCriteriaTable.MAX_MESSAGE_SIZE, reportStatusMessage.length()));
}
stmt.executeUpdate("UPDATE " + TFTestCriteriaTable.table.getTableName() + " SET " + TFTestCriteriaTable.table.reportStatus.getQualifiedColName() + "=" + (newRS != null ? "'" + newRS + "'" : "null") + "," + TFTestCriteriaTable.table.reportMessage.getQualifiedColName() + "=" + (reportStatusMessage != null ? "'" + reportStatusMessage + "'" : "null") + " WHERE " + TFTestCriteriaTable.table.id.getQualifiedColName() + "=" + tcritKey.toString());
if (newRS.equals(TestCriteriaNew.TCRIT_STATUS_NEEDSREPORT)) {
testSuiteOP(new RemoveTestResultsOP(new BigDecimal[] { tcritKey }), con, user, keyFactory);
}
ResultSet rset = stmt.executeQuery("SELECT DISTINCT " + TFTestSuiteTable.table.id.getQualifiedColName() + " FROM " + TFTestSuiteTable.table.getTableName() + "," + TFTestCaseTable.table.getTableName() + "," + TFTestCriteriaTable.table.getTableName() + " WHERE " + TFTestCaseTable.table.id.getQualifiedColName() + "=" + TFTestCriteriaTable.table.testCaseRef.getQualifiedColName() + " AND " + TFTestCriteriaTable.table.id.getQualifiedColName() + " = " + tcritKey.toString() + " AND " + TFTestCaseTable.table.testSuiteRef.getQualifiedColName() + "=" + TFTestSuiteTable.table.id.getQualifiedColName());
while (rset.next()) {
changedTestSuiteKeys.add(rset.getBigDecimal(TFTestSuiteTable.table.id.getUnqualifiedColName()));
}
rset.close();
} else if (tsop instanceof EditTestCriteriaOPMathModel) {
EditTestCriteriaOPMathModel edittcrit_tsop = (EditTestCriteriaOPMathModel) tsop;
BigDecimal tcritKey = edittcrit_tsop.getTestCriteriaKey();
if (tcritKey == null) {
throw new DataAccessException(tsop.getClass().getName() + " had no TestCriteria keys");
}
if ((edittcrit_tsop.getMathModelRegressionRef() == null && edittcrit_tsop.getMathModelRegressionSimRef() != null) || (edittcrit_tsop.getMathModelRegressionRef() != null && edittcrit_tsop.getMathModelRegressionSimRef() == null)) {
throw new DataAccessException(tsop.getClass().getName() + " MathRef and SimRef must both be null or both not null");
}
Double maxAbsError = edittcrit_tsop.getNewMaxAbsError();
Double maxRelError = edittcrit_tsop.getNewMaxRelError();
KeyValue regrSimRef = edittcrit_tsop.getMathModelRegressionSimRef();
// Convert regrSimKey to regrMathModelSimLinkKey
BigDecimal regrMathModelSimLink = null;
if (regrSimRef != null) {
sql = "SELECT " + MathModelSimulationLinkTable.table.id.getQualifiedColName() + " FROM " + MathModelSimulationLinkTable.table.getTableName() + " WHERE " + MathModelSimulationLinkTable.table.simRef.getQualifiedColName() + "=" + regrSimRef.toString();
ResultSet rset = stmt.executeQuery(sql);
if (rset.next()) {
regrMathModelSimLink = rset.getBigDecimal(MathModelSimulationLinkTable.table.id.getUnqualifiedColName());
if (rset.next()) {
throw new DataAccessException("Too many MathModelSimLink found for regrSimKey=" + regrSimRef);
}
} else {
throw new DataAccessException("No MathModelSimLink found for regrSimKey=" + regrSimRef);
}
rset.close();
}
stmt.executeUpdate("UPDATE " + TFTestCriteriaTable.table.getTableName() + " SET " + TFTestCriteriaTable.table.maxAbsError.getQualifiedColName() + "=" + (maxAbsError != null ? "TO_NUMBER(" + maxAbsError.toString() + ")" : "null") + "," + TFTestCriteriaTable.table.maxRelError.getQualifiedColName() + "=" + (maxRelError != null ? "TO_NUMBER(" + maxRelError.toString() + ")" : "null") + "," + TFTestCriteriaTable.table.regressionMMSimRef.getQualifiedColName() + "=" + (regrMathModelSimLink != null ? regrMathModelSimLink.toString() : "null") + " WHERE " + TFTestCriteriaTable.table.id.getQualifiedColName() + "=" + tcritKey.toString());
testSuiteOP(new EditTestCriteriaOPReportStatus(tcritKey, TestCriteriaNew.TCRIT_STATUS_NEEDSREPORT, null), con, user, keyFactory);
ResultSet rset = stmt.executeQuery("SELECT DISTINCT " + TFTestSuiteTable.table.id.getQualifiedColName() + " FROM " + TFTestSuiteTable.table.getTableName() + "," + TFTestCaseTable.table.getTableName() + "," + TFTestCriteriaTable.table.getTableName() + " WHERE " + TFTestCaseTable.table.id.getQualifiedColName() + "=" + TFTestCriteriaTable.table.testCaseRef.getQualifiedColName() + " AND " + TFTestCriteriaTable.table.id.getQualifiedColName() + " = " + tcritKey.toString() + " AND " + TFTestCaseTable.table.testSuiteRef.getQualifiedColName() + "=" + TFTestSuiteTable.table.id.getQualifiedColName());
while (rset.next()) {
changedTestSuiteKeys.add(rset.getBigDecimal(TFTestSuiteTable.table.id.getUnqualifiedColName()));
}
rset.close();
} else if (tsop instanceof EditTestCriteriaOPBioModel) {
EditTestCriteriaOPBioModel edittcrit_tsop = (EditTestCriteriaOPBioModel) tsop;
BigDecimal tcritKey = edittcrit_tsop.getTestCriteriaKey();
if (tcritKey == null) {
throw new DataAccessException(tsop.getClass().getName() + " had no TestCriteria keys");
}
if ((edittcrit_tsop.getBioModelRegressionRef() == null && edittcrit_tsop.getBioModelRegressionSimRef() != null) || (edittcrit_tsop.getBioModelRegressionRef() != null && edittcrit_tsop.getBioModelRegressionSimRef() == null)) {
throw new DataAccessException(tsop.getClass().getName() + " ApplicationRef and SimRef must both be null or both not null");
}
Double maxAbsError = edittcrit_tsop.getNewMaxAbsError();
Double maxRelError = edittcrit_tsop.getNewMaxRelError();
BigDecimal bmscAppKey = null;
BigDecimal bmsltSimKey = null;
final String BMSLT = "BMSLT";
if (edittcrit_tsop.getBioModelRegressionSimRef() != null) {
sql = "SELECT " + BioModelSimContextLinkTable.table.id.getQualifiedColName() + "," + BioModelSimulationLinkTable.table.id.getQualifiedColName() + " " + BMSLT + " FROM " + BioModelSimContextLinkTable.table.getTableName() + "," + SimContextTable.table.getTableName() + "," + SimulationTable.table.getTableName() + "," + BioModelSimulationLinkTable.table.getTableName() + " WHERE " + BioModelSimContextLinkTable.table.bioModelRef.getQualifiedColName() + "=" + edittcrit_tsop.getBioModelRegressionRef() + " AND " + BioModelSimContextLinkTable.table.simContextRef.getQualifiedColName() + "=" + SimContextTable.table.id.getQualifiedColName() + " AND " + SimContextTable.table.mathRef.getQualifiedColName() + "=" + SimulationTable.table.mathRef.getQualifiedColName() + " AND " + SimulationTable.table.id.getQualifiedColName() + "=" + edittcrit_tsop.getBioModelRegressionSimRef().toString() + " AND " + BioModelSimulationLinkTable.table.bioModelRef.getQualifiedColName() + " = " + BioModelSimContextLinkTable.table.bioModelRef.getQualifiedColName() + " AND " + BioModelSimulationLinkTable.table.simRef.getQualifiedColName() + " = " + SimulationTable.table.id.getQualifiedColName();
ResultSet rset = stmt.executeQuery(sql);
if (rset.next()) {
bmscAppKey = rset.getBigDecimal(BioModelSimContextLinkTable.table.id.getUnqualifiedColName());
bmsltSimKey = rset.getBigDecimal(BMSLT);
if (rset.next()) {
throw new DataAccessException("Too many ResultSetMetaData found for simKey=" + edittcrit_tsop.getBioModelRegressionSimRef());
}
}
rset.close();
}
stmt.executeUpdate("UPDATE " + TFTestCriteriaTable.table.getTableName() + " SET " + TFTestCriteriaTable.table.maxAbsError.getQualifiedColName() + "=" + (maxAbsError != null ? "TO_NUMBER(" + maxAbsError.toString() + ")" : "null") + "," + TFTestCriteriaTable.table.maxRelError.getQualifiedColName() + "=" + (maxRelError != null ? "TO_NUMBER(" + maxRelError.toString() + ")" : "null") + "," + TFTestCriteriaTable.table.regressionBMAPPRef.getQualifiedColName() + "=" + (bmscAppKey != null ? bmscAppKey.toString() : "NULL") + "," + TFTestCriteriaTable.table.regressionBMSimRef.getQualifiedColName() + "=" + (bmsltSimKey != null ? bmsltSimKey.toString() : "NULL") + " WHERE " + TFTestCriteriaTable.table.id.getQualifiedColName() + "=" + tcritKey.toString());
testSuiteOP(new EditTestCriteriaOPReportStatus(tcritKey, TestCriteriaNew.TCRIT_STATUS_NEEDSREPORT, null), con, user, keyFactory);
ResultSet rset = stmt.executeQuery("SELECT DISTINCT " + TFTestSuiteTable.table.id.getQualifiedColName() + " FROM " + TFTestSuiteTable.table.getTableName() + "," + TFTestCaseTable.table.getTableName() + "," + TFTestCriteriaTable.table.getTableName() + " WHERE " + TFTestCaseTable.table.id.getQualifiedColName() + "=" + TFTestCriteriaTable.table.testCaseRef.getQualifiedColName() + " AND " + TFTestCriteriaTable.table.id.getQualifiedColName() + " = " + tcritKey.toString() + " AND " + TFTestCaseTable.table.testSuiteRef.getQualifiedColName() + "=" + TFTestSuiteTable.table.id.getQualifiedColName());
while (rset.next()) {
changedTestSuiteKeys.add(rset.getBigDecimal(TFTestSuiteTable.table.id.getUnqualifiedColName()));
}
rset.close();
} else if (tsop instanceof ChangeTestCriteriaErrorLimitOP) {
ChangeTestCriteriaErrorLimitOP edittcrit_tsop = (ChangeTestCriteriaErrorLimitOP) tsop;
BigDecimal[] tcritKeyArr = edittcrit_tsop.getTestCriteriaKeys();
double[] maxAbsErrorArr = edittcrit_tsop.getAbsErrorLimits();
double[] maxRelErrorArr = edittcrit_tsop.getRelErrorLimits();
if (tcritKeyArr == null || (maxAbsErrorArr != null && maxAbsErrorArr.length != tcritKeyArr.length) || (maxAbsErrorArr != null && maxRelErrorArr.length != tcritKeyArr.length)) {
throw new DataAccessException(tsop.getClass().getName() + " Improper arguments.");
}
StringBuffer tcritList = new StringBuffer();
for (int i = 0; i < tcritKeyArr.length; i++) {
if (i != 0) {
tcritList.append(",");
}
tcritList.append(tcritKeyArr[i]);
stmt.executeUpdate("UPDATE " + TFTestCriteriaTable.table.getTableName() + " SET " + (maxAbsErrorArr != null ? TFTestCriteriaTable.table.maxAbsError.getQualifiedColName() + "=" + maxAbsErrorArr[i] : "") + (maxAbsErrorArr != null && maxRelErrorArr != null ? "," : "") + (maxRelErrorArr != null ? TFTestCriteriaTable.table.maxRelError.getQualifiedColName() + "=" + maxRelErrorArr[i] : "") + " WHERE " + TFTestCriteriaTable.table.id.getQualifiedColName() + "=" + tcritKeyArr[i].toString());
testSuiteOP(new EditTestCriteriaOPReportStatus(tcritKeyArr[i], TestCriteriaNew.TCRIT_STATUS_NEEDSREPORT, null), con, user, keyFactory);
}
ResultSet rset = stmt.executeQuery("SELECT DISTINCT " + TFTestSuiteTable.table.id.getQualifiedColName() + " FROM " + TFTestSuiteTable.table.getTableName() + "," + TFTestCaseTable.table.getTableName() + "," + TFTestCriteriaTable.table.getTableName() + " WHERE " + TFTestCaseTable.table.id.getQualifiedColName() + "=" + TFTestCriteriaTable.table.testCaseRef.getQualifiedColName() + " AND " + TFTestCriteriaTable.table.id.getQualifiedColName() + " IN (" + tcritList.toString() + ")" + " AND " + TFTestCaseTable.table.testSuiteRef.getQualifiedColName() + "=" + TFTestSuiteTable.table.id.getQualifiedColName());
while (rset.next()) {
changedTestSuiteKeys.add(rset.getBigDecimal(TFTestSuiteTable.table.id.getUnqualifiedColName()));
}
} else if (tsop instanceof EditTestCasesOP) {
EditTestCasesOP edittc_tsop = (EditTestCasesOP) tsop;
BigDecimal[] tcaseKeys = edittc_tsop.getTestCasesKeys();
String[] annots = edittc_tsop.getNewAnnotations();
boolean[] newSteadyStates = edittc_tsop.getNewSteadyStates();
if (tcaseKeys == null || tcaseKeys.length == 0) {
throw new DataAccessException(tsop.getClass().getName() + " had no TestCase keys");
}
StringBuffer sb = new StringBuffer();
for (int i = 0; i < tcaseKeys.length; i += 1) {
if (i != 0) {
sb.append(",");
}
sb.append(tcaseKeys[i].toString());
if (annots != null) {
String annotation = annots[i];
if (annotation != null) {
if (annotation.length() == 0) {
annotation = null;
} else {
annotation = TokenMangler.getSQLEscapedString(annotation);
}
}
stmt.executeUpdate("UPDATE " + TFTestCaseTable.table.getTableName() + " SET " + TFTestCaseTable.table.tcAnnotation.getQualifiedColName() + "=" + (annotation == null ? "NULL" : "'" + annotation + "'") + " WHERE " + TFTestCaseTable.table.id.getQualifiedColName() + "=" + tcaseKeys[i].toString());
}
if (newSteadyStates != null) {
// Make sure the change is for EXACT type
ResultSet rset = stmt.executeQuery("SELECT DISTINCT " + TFTestCriteriaTable.table.id.getQualifiedColName() + " FROM " + TFTestCaseTable.table.getTableName() + "," + TFTestCriteriaTable.table.getTableName() + " WHERE " + TFTestCaseTable.table.id.getQualifiedColName() + "=" + tcaseKeys[i].toString() + " AND " + "(" + TFTestCaseTable.table.tcSolutionType.getQualifiedColName() + "='" + TestCaseNew.EXACT + "'" + " OR " + TFTestCaseTable.table.tcSolutionType.getQualifiedColName() + "='" + TestCaseNew.EXACT_STEADY + "'" + ")" + " AND " + TFTestCriteriaTable.table.testCaseRef + "=" + TFTestCaseTable.table.id.getQualifiedColName());
// Get TestCriteria Keys for Test case
Vector<BigDecimal> tcritKeyV = new Vector<BigDecimal>();
while (rset.next()) {
tcritKeyV.add(rset.getBigDecimal(TFTestCriteriaTable.table.id.getUnqualifiedColName()));
}
if (tcritKeyV.size() == 0) {
throw new DataAccessException("Updating SteadyState on TestCase that is not EXACT is NOT allowed.");
}
rset.close();
// Change SteadyState type for TestCase
boolean newSteadyState = newSteadyStates[i];
stmt.executeUpdate("UPDATE " + TFTestCaseTable.table.getTableName() + " SET " + TFTestCaseTable.table.tcSolutionType.getQualifiedColName() + "=" + (newSteadyState ? "'" + TestCaseNew.EXACT_STEADY + "'" : "'" + TestCaseNew.EXACT + "'") + " WHERE " + TFTestCaseTable.table.id.getQualifiedColName() + "=" + tcaseKeys[i].toString());
// Change Report status
for (int j = 0; j < tcritKeyV.size(); j++) {
EditTestCriteriaOPReportStatus etcors = new EditTestCriteriaOPReportStatus(tcritKeyV.elementAt(j), TestCriteriaNew.TCRIT_STATUS_NEEDSREPORT, null);
testSuiteOP(etcors, con, user, keyFactory);
}
}
}
ResultSet rset = stmt.executeQuery("SELECT DISTINCT " + TFTestSuiteTable.table.id.getQualifiedColName() + " FROM " + TFTestSuiteTable.table.getTableName() + "," + TFTestCaseTable.table.getTableName() + " WHERE " + TFTestCaseTable.table.id.getQualifiedColName() + " IN (" + sb.toString() + ")" + " AND " + TFTestCaseTable.table.testSuiteRef.getQualifiedColName() + "=" + TFTestSuiteTable.table.id.getQualifiedColName());
while (rset.next()) {
changedTestSuiteKeys.add(rset.getBigDecimal(TFTestSuiteTable.table.id.getUnqualifiedColName()));
}
rset.close();
} else if (tsop instanceof EditTestSuiteOP) {
EditTestSuiteOP editts_tsop = (EditTestSuiteOP) tsop;
BigDecimal[] tsKeys = editts_tsop.getTestSuiteKeys();
String[] annots = editts_tsop.getNewAnnotations();
if (tsKeys == null || tsKeys.length == 0) {
throw new DataAccessException(tsop.getClass().getName() + " had no TestSuite keys");
}
StringBuffer sb = new StringBuffer();
for (int i = 0; i < tsKeys.length; i += 1) {
if (i != 0) {
sb.append(",");
}
sb.append(tsKeys[i].toString());
if (editts_tsop.isLock() != null) {
stmt.executeUpdate("UPDATE " + TFTestSuiteTable.table.getTableName() + " SET " + TFTestSuiteTable.table.isLocked.getQualifiedColName() + "= 1" + " WHERE " + TFTestSuiteTable.table.id.getQualifiedColName() + "=" + tsKeys[i].toString());
} else {
if (annots != null) {
String annotation = annots[i];
if (annotation != null) {
if (annotation.length() == 0) {
annotation = null;
} else {
annotation = TokenMangler.getSQLEscapedString(annotation);
}
}
stmt.executeUpdate("UPDATE " + TFTestSuiteTable.table.getTableName() + " SET " + TFTestSuiteTable.table.tsAnnotation.getQualifiedColName() + "=" + (annotation == null ? "NULL" : "'" + annotation + "'") + " WHERE " + TFTestSuiteTable.table.id.getQualifiedColName() + "=" + tsKeys[i].toString());
}
}
}
ResultSet rset = stmt.executeQuery("SELECT DISTINCT " + TFTestSuiteTable.table.id.getQualifiedColName() + " FROM " + TFTestSuiteTable.table.getTableName() + " WHERE " + TFTestSuiteTable.table.id.getQualifiedColName() + " IN (" + sb.toString() + ")");
while (rset.next()) {
changedTestSuiteKeys.add(rset.getBigDecimal(TFTestSuiteTable.table.id.getUnqualifiedColName()));
}
rset.close();
} else if (tsop instanceof QueryTestCriteriaCrossRefOP) {
QueryTestCriteriaCrossRefOP qtcritxr_tsop = (QueryTestCriteriaCrossRefOP) tsop;
Vector<TestCriteriaCrossRefOPResults.CrossRefData> crossRefV = new Vector<TestCriteriaCrossRefOPResults.CrossRefData>();
//
// BioModel query
//
String TSID = "tsid";
String TCID = "tcid";
String TCRID = "tcrid";
String BMNAME = "bmname";
String SCNAME = "scname";
String SIMNAME = "simname";
String TSALT = "TSALT";
String TCALT = "TCALT";
String TCRALT = "TCRALT";
String BSCALT = "BSCALT";
String MMSIMALT = "MMSIMALT";
String MODELID = "MODELID";
String REFTSUITEKEY = "REFTSUITEKEY";
String REFTCASEKEY = "REFTCASEKEY";
String REFTCRITKEY = "REFTCRITKEY";
// String TCRALT2 = "TCRALT2";
// String SIM2 = "SIM2";
sql = "SELECT DISTINCT " + TFTestSuiteTable.table.tsVersion.getQualifiedColName() + "," + TFTestSuiteTable.table.id.getQualifiedColName() + " " + TSID + "," + TFTestCaseTable.table.id.getQualifiedColName() + " " + TCID + "," + TFTestCriteriaTable.table.id.getQualifiedColName() + " " + TCRID + "," + BioModelTable.table.name.getQualifiedColName() + " " + BMNAME + "," + SimContextTable.table.name.getQualifiedColName() + " " + SCNAME + "," + SimulationTable.table.name.getQualifiedColName() + " " + SIMNAME + "," + TFTestCriteriaTable.table.maxAbsError.getQualifiedColName() + "," + TFTestCriteriaTable.table.maxRelError.getQualifiedColName() + "," + TFTestResultTable.table.varName.getQualifiedColName() + "," + TFTestResultTable.table.minRef.getQualifiedColName() + "," + TFTestResultTable.table.maxRef.getQualifiedColName() + "," + TFTestResultTable.table.absError.getQualifiedColName() + "," + TFTestResultTable.table.relError.getQualifiedColName() + "," + TFTestResultTable.table.meanSqrError.getQualifiedColName() + "," + TFTestResultTable.table.timeAbsError.getQualifiedColName() + "," + TFTestResultTable.table.indexAbsError.getQualifiedColName() + "," + TFTestResultTable.table.timeRelError.getQualifiedColName() + "," + TFTestResultTable.table.indexRelError.getQualifiedColName() + "," + TSALT + "." + TFTestSuiteTable.table.tsVersion.getUnqualifiedColName() + "," + BSCALT + "." + BioModelSimContextLinkTable.table.bioModelRef.getUnqualifiedColName() + "," + TFTestCaseTable.table.tcSolutionType.getQualifiedColName() + "," + BioModelTable.table.id.getQualifiedColName() + " " + MODELID + "," + TSALT + "." + TFTestSuiteTable.table.id.getUnqualifiedColName() + " " + REFTSUITEKEY + "," + TCALT + "." + TFTestCaseTable.table.id.getUnqualifiedColName() + " " + REFTCASEKEY + "," + "NULL " + // TCRALT2+"."+TFTestCriteriaTable.table.id.getUnqualifiedColName() +" "+REFTCRITKEY +
REFTCRITKEY + " FROM " + TFTestSuiteTable.table.getTableName() + "," + TFTestCaseTable.table.getTableName() + "," + TFTestCriteriaTable.table.getTableName() + "," + TFTestResultTable.table.getTableName() + "," + BioModelSimContextLinkTable.table.getTableName() + "," + BioModelTable.table.getTableName() + "," + SimContextTable.table.getTableName() + "," + SimulationTable.table.getTableName() + "," + BioModelSimulationLinkTable.table.getTableName() + "," + TFTestSuiteTable.table.getTableName() + " " + TSALT + "," + TFTestCaseTable.table.getTableName() + " " + TCALT + "," + TFTestCriteriaTable.table.getTableName() + " " + TCRALT + "," + BioModelSimContextLinkTable.table.getTableName() + " " + BSCALT + // ","+TFTestCriteriaTable.table.getTableName()+" "+TCRALT2+
" WHERE " + TFTestSuiteTable.table.id.getQualifiedColName() + "=" + TFTestCaseTable.table.testSuiteRef.getQualifiedColName() + " AND " + TFTestCriteriaTable.table.testCaseRef.getQualifiedColName() + "=" + TFTestCaseTable.table.id.getQualifiedColName() + " AND " + TFTestResultTable.table.testCriteriaRef.getQualifiedColName() + "(+)" + "=" + TFTestCriteriaTable.table.id.getQualifiedColName() + (qtcritxr_tsop.getVarName() != null ? " AND " + TFTestResultTable.table.varName.getQualifiedColName() + "(+)" + "=" + "'" + qtcritxr_tsop.getVarName() + "'" : "") + " AND " + TFTestCaseTable.table.bmAppRef.getQualifiedColName() + "=" + BioModelSimContextLinkTable.table.id.getQualifiedColName() + " AND " + BioModelSimContextLinkTable.table.bioModelRef.getQualifiedColName() + "=" + BioModelTable.table.id.getQualifiedColName() + " AND " + BioModelSimContextLinkTable.table.simContextRef.getQualifiedColName() + "=" + SimContextTable.table.id.getQualifiedColName() + " AND " + BioModelSimulationLinkTable.table.bioModelRef.getQualifiedColName() + "=" + BioModelTable.table.id.getQualifiedColName() + " AND " + BioModelSimulationLinkTable.table.simRef.getQualifiedColName() + "=" + SimulationTable.table.id.getQualifiedColName() + " AND " + BioModelTable.table.versionBranchID.getQualifiedColName() + "=" + "(" + "SELECT DISTINCT " + BioModelTable.table.versionBranchID.getQualifiedColName() + " FROM " + TFTestCaseTable.table.getTableName() + "," + TFTestCriteriaTable.table.getTableName() + "," + BioModelSimContextLinkTable.table.getTableName() + "," + BioModelTable.table.getTableName() + " WHERE " + TFTestCriteriaTable.table.id.getQualifiedColName() + "=" + qtcritxr_tsop.getTestCriterium() + " AND " + TFTestCriteriaTable.table.testCaseRef.getQualifiedColName() + "=" + TFTestCaseTable.table.id.getQualifiedColName() + " AND " + TFTestCaseTable.table.bmAppRef.getQualifiedColName() + "=" + BioModelSimContextLinkTable.table.id.getQualifiedColName() + " AND " + BioModelSimContextLinkTable.table.bioModelRef.getQualifiedColName() + "=" + BioModelTable.table.id.getQualifiedColName() + ")" + " AND " + SimContextTable.table.name.getQualifiedColName() + "=" + "(" + "SELECT DISTINCT " + SimContextTable.table.name.getQualifiedColName() + " FROM " + TFTestCaseTable.table.getTableName() + "," + TFTestCriteriaTable.table.getTableName() + "," + BioModelSimContextLinkTable.table.getTableName() + "," + SimContextTable.table.getTableName() + " WHERE " + TFTestCriteriaTable.table.id.getQualifiedColName() + "=" + qtcritxr_tsop.getTestCriterium() + " AND " + TFTestCriteriaTable.table.testCaseRef.getQualifiedColName() + "=" + TFTestCaseTable.table.id.getQualifiedColName() + " AND " + TFTestCaseTable.table.bmAppRef.getQualifiedColName() + "=" + BioModelSimContextLinkTable.table.id.getQualifiedColName() + " AND " + BioModelSimContextLinkTable.table.simContextRef.getQualifiedColName() + "=" + SimContextTable.table.id.getQualifiedColName() + ")" + " AND " + SimulationTable.table.name.getQualifiedColName() + "=" + "(" + "SELECT DISTINCT " + SimulationTable.table.name.getQualifiedColName() + " FROM " + TFTestCriteriaTable.table.getTableName() + "," + SimulationTable.table.getTableName() + " WHERE " + TFTestCriteriaTable.table.id.getQualifiedColName() + "=" + qtcritxr_tsop.getTestCriterium() + " AND " + TFTestCriteriaTable.table.simulationRef.getQualifiedColName() + "=" + SimulationTable.table.id.getQualifiedColName() + ")" + // reference info
" AND " + TSALT + "." + TFTestSuiteTable.table.id.getUnqualifiedColName() + "(+)" + "=" + TCALT + "." + TFTestCaseTable.table.testSuiteRef.getUnqualifiedColName() + " AND " + BSCALT + "." + BioModelSimContextLinkTable.table.id.getUnqualifiedColName() + "(+)" + "=" + TCRALT + "." + TFTestCriteriaTable.table.regressionBMAPPRef.getUnqualifiedColName() + " AND " + TCALT + "." + TFTestCaseTable.table.bmAppRef.getUnqualifiedColName() + "(+)" + "=" + TCRALT + "." + TFTestCriteriaTable.table.regressionBMAPPRef.getUnqualifiedColName() + " AND " + TCRALT + "." + TFTestCriteriaTable.table.id.getUnqualifiedColName() + "=" + TFTestCriteriaTable.table.id.getQualifiedColName() + // SIM2+"."+SimulationTable.table.name.getUnqualifiedColName()+"="+SimulationTable.table.name.getQualifiedColName()+
" ORDER BY " + TSID;
ResultSet rset = stmt.executeQuery(sql);
while (rset.next()) {
crossRefV.add(new TestCriteriaCrossRefOPResults.CrossRefData(rset, true));
}
rset.close();
//
// MathModel query
//
String MMNAME = "mmname";
sql = "SELECT DISTINCT " + TFTestSuiteTable.table.tsVersion.getQualifiedColName() + "," + TFTestSuiteTable.table.id.getQualifiedColName() + " " + TSID + "," + TFTestCaseTable.table.id.getQualifiedColName() + " " + TCID + "," + TFTestCriteriaTable.table.id.getQualifiedColName() + " " + TCRID + "," + MathModelTable.table.name.getQualifiedColName() + " " + MMNAME + "," + SimulationTable.table.name.getQualifiedColName() + " " + SIMNAME + "," + TFTestCriteriaTable.table.maxAbsError.getQualifiedColName() + "," + TFTestCriteriaTable.table.maxRelError.getQualifiedColName() + "," + TFTestResultTable.table.varName.getQualifiedColName() + "," + TFTestResultTable.table.minRef.getQualifiedColName() + "," + TFTestResultTable.table.maxRef.getQualifiedColName() + "," + TFTestResultTable.table.absError.getQualifiedColName() + "," + TFTestResultTable.table.relError.getQualifiedColName() + "," + TFTestResultTable.table.meanSqrError.getQualifiedColName() + "," + TFTestResultTable.table.timeAbsError.getQualifiedColName() + "," + TFTestResultTable.table.indexAbsError.getQualifiedColName() + "," + TFTestResultTable.table.timeRelError.getQualifiedColName() + "," + TFTestResultTable.table.indexRelError.getQualifiedColName() + "," + TSALT + "." + TFTestSuiteTable.table.tsVersion.getUnqualifiedColName() + "," + MMSIMALT + "." + MathModelSimulationLinkTable.table.mathModelRef.getUnqualifiedColName() + "," + TFTestCaseTable.table.tcSolutionType.getQualifiedColName() + "," + MathModelTable.table.id.getQualifiedColName() + " " + MODELID + "," + TSALT + "." + TFTestSuiteTable.table.id.getUnqualifiedColName() + " " + REFTSUITEKEY + "," + TCALT + "." + TFTestCaseTable.table.id.getUnqualifiedColName() + " " + REFTCASEKEY + "," + "NULL " + // TCRALT2+"."+TFTestCriteriaTable.table.id.getUnqualifiedColName() +" "+REFTCRITKEY +
REFTCRITKEY + " FROM " + TFTestSuiteTable.table.getTableName() + "," + TFTestCaseTable.table.getTableName() + "," + TFTestCriteriaTable.table.getTableName() + "," + TFTestResultTable.table.getTableName() + "," + MathModelTable.table.getTableName() + "," + SimulationTable.table.getTableName() + "," + MathModelSimulationLinkTable.table.getTableName() + "," + TFTestSuiteTable.table.getTableName() + " " + TSALT + "," + TFTestCaseTable.table.getTableName() + " " + TCALT + "," + TFTestCriteriaTable.table.getTableName() + " " + TCRALT + "," + MathModelSimulationLinkTable.table.getTableName() + " " + MMSIMALT + // ","+TFTestCriteriaTable.table.getTableName()+" "+TCRALT2+
" WHERE " + TFTestSuiteTable.table.id.getQualifiedColName() + "=" + TFTestCaseTable.table.testSuiteRef.getQualifiedColName() + " AND " + TFTestCriteriaTable.table.testCaseRef.getQualifiedColName() + "=" + TFTestCaseTable.table.id.getQualifiedColName() + " AND " + TFTestResultTable.table.testCriteriaRef.getQualifiedColName() + "(+)" + "=" + TFTestCriteriaTable.table.id.getQualifiedColName() + (qtcritxr_tsop.getVarName() != null ? " AND " + TFTestResultTable.table.varName.getQualifiedColName() + "(+)" + "=" + "'" + qtcritxr_tsop.getVarName() + "'" : "") + " AND " + TFTestCaseTable.table.mathModelRef.getQualifiedColName() + "=" + MathModelTable.table.id.getQualifiedColName() + " AND " + TFTestCriteriaTable.table.simulationRef.getQualifiedColName() + "=" + SimulationTable.table.id.getQualifiedColName() + " AND " + MathModelSimulationLinkTable.table.mathModelRef.getQualifiedColName() + "=" + MathModelTable.table.id.getQualifiedColName() + " AND " + MathModelSimulationLinkTable.table.simRef.getQualifiedColName() + "=" + SimulationTable.table.id.getQualifiedColName() + " AND " + MathModelTable.table.versionBranchID.getQualifiedColName() + "=" + "(" + "SELECT DISTINCT " + MathModelTable.table.versionBranchID.getQualifiedColName() + " FROM " + TFTestCaseTable.table.getTableName() + "," + TFTestCriteriaTable.table.getTableName() + "," + MathModelTable.table.getTableName() + " WHERE " + TFTestCriteriaTable.table.id.getQualifiedColName() + "=" + qtcritxr_tsop.getTestCriterium() + " AND " + TFTestCriteriaTable.table.testCaseRef.getQualifiedColName() + "=" + TFTestCaseTable.table.id.getQualifiedColName() + " AND " + TFTestCaseTable.table.mathModelRef.getQualifiedColName() + "=" + MathModelTable.table.id.getQualifiedColName() + ")" + " AND " + SimulationTable.table.name.getQualifiedColName() + "=" + "(" + "SELECT DISTINCT " + SimulationTable.table.name.getQualifiedColName() + " FROM " + TFTestCriteriaTable.table.getTableName() + "," + SimulationTable.table.getTableName() + " WHERE " + TFTestCriteriaTable.table.id.getQualifiedColName() + "=" + qtcritxr_tsop.getTestCriterium() + " AND " + TFTestCriteriaTable.table.simulationRef.getQualifiedColName() + "=" + SimulationTable.table.id.getQualifiedColName() + ")" + // reference info
" AND " + TSALT + "." + TFTestSuiteTable.table.id.getUnqualifiedColName() + "(+)" + "=" + TCALT + "." + TFTestCaseTable.table.testSuiteRef.getUnqualifiedColName() + " AND " + TCALT + "." + TFTestCaseTable.table.mathModelRef.getUnqualifiedColName() + "(+)" + "=" + MMSIMALT + "." + MathModelSimulationLinkTable.table.mathModelRef.getUnqualifiedColName() + " AND " + TCRALT + "." + TFTestCriteriaTable.table.regressionMMSimRef.getUnqualifiedColName() + "=" + MMSIMALT + "." + MathModelSimulationLinkTable.table.id.getUnqualifiedColName() + "(+)" + " AND " + TCRALT + "." + TFTestCriteriaTable.table.id.getUnqualifiedColName() + "=" + TFTestCriteriaTable.table.id.getQualifiedColName() + // SIM2+"."+SimulationTable.table.name.getUnqualifiedColName()+"="+SimulationTable.table.name.getQualifiedColName()+
" ORDER BY " + TSID;
rset = stmt.executeQuery(sql);
while (rset.next()) {
crossRefV.add(new TestCriteriaCrossRefOPResults.CrossRefData(rset, false));
}
rset.close();
return new TestCriteriaCrossRefOPResults(qtcritxr_tsop.getTestSuiteKey(), qtcritxr_tsop.getTestCriterium(), crossRefV);
} else {
throw new IllegalArgumentException("Unsupported OP+" + tsop);
}
} finally {
if (stmt != null) {
stmt.close();
}
}
Object[] changedTSKeys = changedTestSuiteKeys.toArray();
for (int i = 0; i < changedTSKeys.length; i += 1) {
System.out.println("TestSuite " + changedTSKeys[i].toString() + " changed");
// testSuiteHash.remove(changedTSKeys[i]);
}
return new TestSuiteOPResults(null);
}
Also used :
AddTestCriteriaOPBioModel(cbit.vcell.numericstest.AddTestCriteriaOPBioModel)
AddTestCasesOPBioModel(cbit.vcell.numericstest.AddTestCasesOPBioModel)
LoadTestInfoOpResults(cbit.vcell.numericstest.LoadTestInfoOpResults)
LoadTestSoftwareVersionTimeStamp(cbit.vcell.numericstest.LoadTestInfoOpResults.LoadTestSoftwareVersionTimeStamp)
AddTestResultsOP(cbit.vcell.numericstest.AddTestResultsOP)
TreeSet(java.util.TreeSet)
ResultSet(java.sql.ResultSet)
TestSuiteOPResults(cbit.vcell.numericstest.TestSuiteOPResults)
EditTestCriteriaOPBioModel(cbit.vcell.numericstest.EditTestCriteriaOPBioModel)
VariableComparisonSummary(cbit.vcell.solver.test.VariableComparisonSummary)
Vector(java.util.Vector)
TestCriteriaCrossRefOPResults(cbit.vcell.numericstest.TestCriteriaCrossRefOPResults)
RemoveTestCasesOP(cbit.vcell.numericstest.RemoveTestCasesOP)
AddTestCriteriaOPMathModel(cbit.vcell.numericstest.AddTestCriteriaOPMathModel)
ModelGeometryOPResults(cbit.vcell.numericstest.ModelGeometryOPResults)
RemoveTestSuiteOP(cbit.vcell.numericstest.RemoveTestSuiteOP)
KeyValue(org.vcell.util.document.KeyValue)
LoadTestInfoOP(cbit.vcell.numericstest.LoadTestInfoOP)
AddTestCasesOP(cbit.vcell.numericstest.AddTestCasesOP)
EditTestSuiteOP(cbit.vcell.numericstest.EditTestSuiteOP)
RemoveTestResultsOP(cbit.vcell.numericstest.RemoveTestResultsOP)
RemoveTestCriteriaOP(cbit.vcell.numericstest.RemoveTestCriteriaOP)
EditTestCriteriaOPMathModel(cbit.vcell.numericstest.EditTestCriteriaOPMathModel)
AddTestSuiteOP(cbit.vcell.numericstest.AddTestSuiteOP)
AddTestCasesOPMathModel(cbit.vcell.numericstest.AddTestCasesOPMathModel)
DataAccessException(org.vcell.util.DataAccessException)
EditTestCriteriaOPReportStatus(cbit.vcell.numericstest.EditTestCriteriaOPReportStatus)
ModelGeometryOP(cbit.vcell.numericstest.ModelGeometryOP)
QueryTestCriteriaCrossRefOP(cbit.vcell.numericstest.QueryTestCriteriaCrossRefOP)
PreparedStatement(java.sql.PreparedStatement)
Statement(java.sql.Statement)
Hashtable(java.util.Hashtable)
InsertHashtable(cbit.sql.InsertHashtable)
BioModelInfo(org.vcell.util.document.BioModelInfo)
MathModelInfo(org.vcell.util.document.MathModelInfo)
BigDecimal(java.math.BigDecimal)
EditTestCasesOP(cbit.vcell.numericstest.EditTestCasesOP)
ChangeTestCriteriaErrorLimitOP(cbit.vcell.numericstest.ChangeTestCriteriaErrorLimitOP)
SimpleDateFormat(java.text.SimpleDateFormat)
Aggregations
MathModelInfo (org.vcell.util.document.MathModelInfo)67
BioModelInfo (org.vcell.util.document.BioModelInfo)37
DataAccessException (org.vcell.util.DataAccessException)32
GeometryInfo (cbit.vcell.geometry.GeometryInfo)22
VCDocumentInfo (org.vcell.util.document.VCDocumentInfo)14
MathModel (cbit.vcell.mathmodel.MathModel)12
Vector (java.util.Vector)11
BioModel (cbit.vcell.biomodel.BioModel)10
KeyValue (org.vcell.util.document.KeyValue)10
RemoteProxyException (cbit.vcell.message.server.bootstrap.client.RemoteProxyVCellConnectionFactory.RemoteProxyException)8
Hashtable (java.util.Hashtable)8
ObjectNotFoundException (org.vcell.util.ObjectNotFoundException)8
User (org.vcell.util.document.User)8
Simulation (cbit.vcell.solver.Simulation)7
UserCancelException (org.vcell.util.UserCancelException)7
Geometry (cbit.vcell.geometry.Geometry)6
SimulationContext (cbit.vcell.mapping.SimulationContext)6
TestCriteriaNewBioModel (cbit.vcell.numericstest.TestCriteriaNewBioModel)6
TestCriteriaNewMathModel (cbit.vcell.numericstest.TestCriteriaNewMathModel)6
SimulationInfo (cbit.vcell.solver.SimulationInfo)6
