Examples with DataObject org.vcell.workflow.DataObject used on opensource projects

Example 1 with DataObject

use of org.vcell.workflow.DataObject in project vcell by virtualcell.

the class WorkflowGraphModel method refreshAll.

/**
 * Insert the method's description here.
 * Creation date: (7/8/2003 9:11:57 AM)
 */
@Override
public void refreshAll() {
    clearAllShapes();
    if (getWorkflow() == null) {
        fireGraphChanged(new GraphEvent(this));
        return;
    }
    ContainerShape containerShape = new SimpleContainerShape(new Object(), this, "workflow-container");
    addShape(containerShape);
    // 
    for (Task task : getWorkflow().getTasks()) {
        TaskShape taskShape = new TaskShape(task, this);
        containerShape.addChildShape(taskShape);
        addShape(taskShape);
        // 
        for (DataOutput<? extends Object> output : task.getOutputs()) {
            if (!output.getName().equals("displayed")) {
                DataHolderShape dataHolderShape = new DataHolderShape(output, this);
                containerShape.addChildShape(dataHolderShape);
                addShape(dataHolderShape);
                WorkflowEdgeShape workflowEdgeShape = new WorkflowEdgeShape(task.getName() + ":" + output.getName(), taskShape, dataHolderShape, this, true, false);
                containerShape.addChildShape(workflowEdgeShape);
                addShape(workflowEdgeShape);
            }
        }
    // //
    // // add a DataInputShape for each input and connect to TaskShape with an edge
    // //
    // for (DataInput<? extends Object> input : task.getInputs()){
    // DataInputShape dataInputShape = new DataInputShape(input,this);
    // containerShape.addChildShape(dataInputShape);
    // addShape(dataInputShape);
    // 
    // WorkflowEdgeShape workflowEdgeShape = new WorkflowEdgeShape("input:"+task.getName()+":"+input.name,dataInputShape, taskShape, this, true, false);
    // containerShape.addChildShape(workflowEdgeShape);
    // addShape(workflowEdgeShape);
    // }
    }
    // 
    for (Task task : getWorkflow().getTasks()) {
        for (DataInput<? extends Object> input : task.getInputs()) {
            DataObject<? extends Object> source = getWorkflow().getConnectorSource(input);
            if (source instanceof DataOutput) {
                DataHolderShape dataHolderShape = (DataHolderShape) getShapeFromModelObject(source);
                TaskShape taskShape = (TaskShape) getShapeFromModelObject(task);
                WorkflowEdgeShape workflowEdgeShape = new WorkflowEdgeShape("connection:" + input.getName(), dataHolderShape, taskShape, this, true, false);
                containerShape.addChildShape(workflowEdgeShape);
                addShape(workflowEdgeShape);
            }
        }
    }
    fireGraphChanged(new GraphEvent(this));
}

Example 2 with DataObject

use of org.vcell.workflow.DataObject in project vcell by virtualcell.

the class WorkflowObjectsTableModel method getValue.

private String getValue(WorkflowObject workflowObject) {
    if (workflowObject instanceof Task) {
        return "";
    } else {
        Object data = null;
        Class dataType = null;
        if (workflowObject instanceof WorkflowDataSource) {
            WorkflowDataSource dataHolder = (WorkflowDataSource) workflowObject;
            WorkflowDataSource dataSource = taskContext.getWorkflow().getDataSource((DataObject) dataHolder);
            data = taskContext.getRepository().getData(dataSource);
            dataType = dataHolder.getType();
        } else if (workflowObject instanceof DataInput) {
            DataInput dataInput = (DataInput) workflowObject;
            data = taskContext.getData(dataInput);
            dataType = dataInput.getType();
        }
        if (data instanceof RowColumnResultSet) {
            RowColumnResultSet rc = (RowColumnResultSet) data;
            int N = rc.getColumnDescriptionsCount();
            StringBuffer buffer = new StringBuffer(rc.getRowCount() + " rows of " + N + " {");
            int MAX = 3;
            for (int i = 0; i < N; i++) {
                buffer.append("\"" + rc.getColumnDescriptions(i).getDisplayName() + "\"");
                if (i >= MAX - 1) {
                    buffer.append(", ...");
                    break;
                }
                if (i < N - 1) {
                    buffer.append(", ");
                }
            }
            buffer.append("}");
            return buffer.toString();
        } else if (data instanceof String) {
            return "\"" + (String) data + "\"";
        } else if (data instanceof ROI) {
            return "ROI \"" + ((ROI) data).getROIName() + "\"";
        } else if (data instanceof ROI[]) {
            ROI[] rois = (ROI[]) data;
            int N = rois.length;
            int MAX = 3;
            StringBuffer buffer = new StringBuffer("ROI[" + N + "] { ");
            for (int i = 0; i < N; i++) {
                buffer.append("\"" + rois[i].getROIName() + "\"");
                if (i >= MAX - 1) {
                    buffer.append(", ...");
                    break;
                }
                if (i < N - 1) {
                    buffer.append(", ");
                }
            }
            buffer.append("}");
            return buffer.toString();
        } else if (data instanceof Image) {
            Image image = (Image) data;
            return image.getClass().getSimpleName() + " " + image.getISize().toString();
        } else if (data instanceof ImageTimeSeries) {
            ImageTimeSeries ts = (ImageTimeSeries) data;
            int N = ts.getSizeT();
            double[] times = ts.getImageTimeStamps();
            return ts.getType().getSimpleName() + "[" + N + "] " + ts.getISize() + " times=[" + times[0] + "," + times[N - 1] + "]";
        } else if (data != null) {
            return data.toString();
        } else {
            return "null " + dataType.getSimpleName();
        }
    }
}

Example 3 with DataObject

use of org.vcell.workflow.DataObject in project vcell by virtualcell.

the class WorkflowJGraphProxy method createGraphJGraphX.

public WorkflowGraph createGraphJGraphX() {
    graph = new WorkflowGraph();
    graph.getModel().beginUpdate();
    graph.setCellsEditable(false);
    graph.setCellsCloneable(false);
    graph.setCellsMovable(true);
    graph.setCellsResizable(false);
    graph.setDropEnabled(false);
    Object parent = graph.getDefaultParent();
    try {
        // 
        // make subgraph for each task ... alot space from [-1:1] in x and center in y
        // 
        int scale = 100;
        int taskPosX = 20;
        int taskPosXDelta = 240;
        int taskPosY = scale / 2;
        HashMap<Task, WorkflowObjectCell> taskMap = new HashMap<Task, WorkflowObjectCell>();
        for (Task task : context.getWorkflow().getTasks()) {
            WorkflowObjectCell taskNode = createGenericCell(task);
            taskNode.getGeometry().setX(task.getDiagramStyle().getX(taskPosX));
            taskNode.getGeometry().setY(task.getDiagramStyle().getY(taskPosY));
            taskMap.put(task, taskNode);
            graph.addCell(taskNode);
            taskPosX += taskPosXDelta;
        }
        // 
        for (Task task : context.getWorkflow().getTasks()) {
            for (DataInput<? extends Object> input : task.getInputs()) {
                DataObject<? extends Object> dataSource = context.getWorkflow().getConnectorSource(input);
                if (dataSource != null) {
                    WorkflowObjectCell inputTaskNode = taskMap.get(input.getParent());
                    if (inputTaskNode != null) {
                        WorkflowObjectCell inputNode = null;
                        for (int i = 0; i < inputTaskNode.getChildCount(); i++) {
                            if (inputTaskNode.getChildAt(i).getValue().equals(input.getName())) {
                                inputNode = (WorkflowObjectCell) inputTaskNode.getChildAt(i);
                            }
                        }
                        if (dataSource instanceof DataOutput) {
                            DataOutput dataHolder = (DataOutput) dataSource;
                            Object dataHolderParent = dataHolder.getParent();
                            if (dataHolderParent instanceof Task) {
                                WorkflowObjectCell outputTask = taskMap.get((Task) dataHolderParent);
                                WorkflowObjectCell holderNode = null;
                                for (int i = 0; i < outputTask.getChildCount(); i++) {
                                    if (outputTask.getChildAt(i).getValue().equals(dataHolder.getName())) {
                                        holderNode = (WorkflowObjectCell) outputTask.getChildAt(i);
                                    }
                                }
                                if (holderNode != null) {
                                    // an output of another task
                                    graph.insertEdge(parent, null, null, holderNode, inputNode);
                                }
                            }
                        }
                    }
                }
            }
        }
    } finally {
        graph.getModel().endUpdate();
    }
    graph.addListener(null, graphEventListener);
    // graph.getModel().addListener(mxEvent.CHANGE, getEventListener());
    return graph;
}