Examples with WorkflowDataSource org.vcell.workflow.WorkflowDataSource used on opensource projects

Example 1 with WorkflowDataSource

use of org.vcell.workflow.WorkflowDataSource in project vcell by virtualcell.

the class WorkflowObjectsPanel method hasDisplayData.

private boolean hasDisplayData(TaskContext taskContext, WorkflowObject workflowObject) {
    if (workflowObject instanceof DataInput || workflowObject instanceof DataOutput) {
        String title = parametersFunctionsTableModel.getName(workflowObject);
        WindowListener listener = new WindowAdapter() {
        };
        Object data = null;
        if (workflowObject instanceof WorkflowDataSource) {
            WorkflowDataSource dataHolder = (WorkflowDataSource) workflowObject;
            data = taskContext.getRepository().getData(dataHolder);
        } else if (workflowObject instanceof DataInput) {
            DataInput dataInput = (DataInput) workflowObject;
            data = taskContext.getData(dataInput);
        }
        if (data instanceof RowColumnResultSet || data instanceof ROI || data instanceof ProfileData[] || data instanceof Image || data instanceof ImageTimeSeries) {
            return true;
        }
    }
    return false;
}

Example 2 with WorkflowDataSource

use of org.vcell.workflow.WorkflowDataSource in project vcell by virtualcell.

the class WorkflowObjectsPanel method displayData.

private void displayData(TaskContext taskContext, WorkflowObject workflowObject) {
    if (workflowObject instanceof DataInput || workflowObject instanceof DataOutput) {
        String title = parametersFunctionsTableModel.getName(workflowObject);
        WindowListener listener = new WindowAdapter() {
        };
        Object data = null;
        if (workflowObject instanceof WorkflowDataSource) {
            WorkflowDataSource dataHolder = (WorkflowDataSource) workflowObject;
            data = taskContext.getRepository().getData(dataHolder);
        } else if (workflowObject instanceof DataInput) {
            DataInput dataInput = (DataInput) workflowObject;
            data = taskContext.getData(dataInput);
        }
        if (data instanceof RowColumnResultSet) {
            RowColumnResultSet rc = (RowColumnResultSet) data;
            try {
                new DisplayPlotOp().displayPlot(rc, title, listener);
            } catch (ExpressionException e) {
                e.printStackTrace();
            }
        } else if (data instanceof ROI) {
            ROI roi = (ROI) data;
            Image image = roi.getRoiImages()[0];
            new DisplayImageOp().displayImage(image, title, listener);
        } else if (data instanceof ProfileData[]) {
            ProfileData[] profileData = (ProfileData[]) data;
            new DisplayProfileLikelihoodPlotsOp().displayProfileLikelihoodPlots(profileData, title, listener);
        } else if (data instanceof Image) {
            Image image = (Image) data;
            new DisplayImageOp().displayImage(image, title, listener);
        } else if (data instanceof ImageTimeSeries) {
            ImageTimeSeries imageTimeSeries = (ImageTimeSeries) data;
            try {
                DisplayTimeSeries.displayImageTimeSeries(imageTimeSeries, title, listener);
            } catch (ImageException | IOException e) {
                e.printStackTrace();
            }
        }
    }
}

Example 3 with WorkflowDataSource

use of org.vcell.workflow.WorkflowDataSource in project vcell by virtualcell.

the class WorkflowObjectsTableModel method getValue.

private String getValue(WorkflowObject workflowObject) {
    if (workflowObject instanceof Task) {
        return "";
    } else {
        Object data = null;
        Class dataType = null;
        if (workflowObject instanceof WorkflowDataSource) {
            WorkflowDataSource dataHolder = (WorkflowDataSource) workflowObject;
            WorkflowDataSource dataSource = taskContext.getWorkflow().getDataSource((DataObject) dataHolder);
            data = taskContext.getRepository().getData(dataSource);
            dataType = dataHolder.getType();
        } else if (workflowObject instanceof DataInput) {
            DataInput dataInput = (DataInput) workflowObject;
            data = taskContext.getData(dataInput);
            dataType = dataInput.getType();
        }
        if (data instanceof RowColumnResultSet) {
            RowColumnResultSet rc = (RowColumnResultSet) data;
            int N = rc.getColumnDescriptionsCount();
            StringBuffer buffer = new StringBuffer(rc.getRowCount() + " rows of " + N + " {");
            int MAX = 3;
            for (int i = 0; i < N; i++) {
                buffer.append("\"" + rc.getColumnDescriptions(i).getDisplayName() + "\"");
                if (i >= MAX - 1) {
                    buffer.append(", ...");
                    break;
                }
                if (i < N - 1) {
                    buffer.append(", ");
                }
            }
            buffer.append("}");
            return buffer.toString();
        } else if (data instanceof String) {
            return "\"" + (String) data + "\"";
        } else if (data instanceof ROI) {
            return "ROI \"" + ((ROI) data).getROIName() + "\"";
        } else if (data instanceof ROI[]) {
            ROI[] rois = (ROI[]) data;
            int N = rois.length;
            int MAX = 3;
            StringBuffer buffer = new StringBuffer("ROI[" + N + "] { ");
            for (int i = 0; i < N; i++) {
                buffer.append("\"" + rois[i].getROIName() + "\"");
                if (i >= MAX - 1) {
                    buffer.append(", ...");
                    break;
                }
                if (i < N - 1) {
                    buffer.append(", ");
                }
            }
            buffer.append("}");
            return buffer.toString();
        } else if (data instanceof Image) {
            Image image = (Image) data;
            return image.getClass().getSimpleName() + " " + image.getISize().toString();
        } else if (data instanceof ImageTimeSeries) {
            ImageTimeSeries ts = (ImageTimeSeries) data;
            int N = ts.getSizeT();
            double[] times = ts.getImageTimeStamps();
            return ts.getType().getSimpleName() + "[" + N + "] " + ts.getISize() + " times=[" + times[0] + "," + times[N - 1] + "]";
        } else if (data != null) {
            return data.toString();
        } else {
            return "null " + dataType.getSimpleName();
        }
    }
}