Examples with WorkflowObject org.vcell.workflow.WorkflowObject used on opensource projects

Example 6 with WorkflowObject

use of org.vcell.workflow.WorkflowObject in project vcell by virtualcell.

the class WorkflowJGraphProxy method validateConnection.

private String validateConnection(mxICell source, mxICell target) {
    try {
        if (!(source instanceof WorkflowObjectCell) || !(target instanceof WorkflowObjectCell)) {
            return "source or target is null";
        }
        WorkflowObject workflowSourceObject = ((WorkflowObjectCell) source).workflowObject;
        WorkflowObject workflowTargetObject = ((WorkflowObjectCell) target).workflowObject;
        if (workflowSourceObject instanceof DataOutput && workflowTargetObject instanceof DataInput) {
            DataInput input = (DataInput) workflowTargetObject;
            Type inputClass = input.getType();
            if (context.getWorkflow().getConnectorSource(input) != null) {
                return "don't add this connection, a connection already exists";
            } else {
                DataOutput output = (DataOutput) workflowSourceObject;
                Type outputClass = output.getType();
                if (outputClass.getClass().isAssignableFrom(inputClass.getClass())) {
                    return null;
                } else {
                    return "can't connect " + workflowSourceObject.getPath() + " of type " + outputClass + "\n to " + workflowTargetObject.getPath() + " of type " + inputClass;
                }
            }
        } else {
            return "unknown source or desintation type";
        }
    } catch (Exception e) {
        e.printStackTrace();
        return "error validating edge: exception: " + e.getMessage();
    } finally {
        context.getWorkflow().refreshStatus();
    }
}

Example 7 with WorkflowObject

use of org.vcell.workflow.WorkflowObject in project vcell by virtualcell.

the class WorkflowObjectsTableModel method getValue.

private String getValue(WorkflowObject workflowObject) {
    if (workflowObject instanceof Task) {
        return "";
    } else {
        Object data = null;
        Class dataType = null;
        if (workflowObject instanceof WorkflowDataSource) {
            WorkflowDataSource dataHolder = (WorkflowDataSource) workflowObject;
            WorkflowDataSource dataSource = taskContext.getWorkflow().getDataSource((DataObject) dataHolder);
            data = taskContext.getRepository().getData(dataSource);
            dataType = dataHolder.getType();
        } else if (workflowObject instanceof DataInput) {
            DataInput dataInput = (DataInput) workflowObject;
            data = taskContext.getData(dataInput);
            dataType = dataInput.getType();
        }
        if (data instanceof RowColumnResultSet) {
            RowColumnResultSet rc = (RowColumnResultSet) data;
            int N = rc.getColumnDescriptionsCount();
            StringBuffer buffer = new StringBuffer(rc.getRowCount() + " rows of " + N + " {");
            int MAX = 3;
            for (int i = 0; i < N; i++) {
                buffer.append("\"" + rc.getColumnDescriptions(i).getDisplayName() + "\"");
                if (i >= MAX - 1) {
                    buffer.append(", ...");
                    break;
                }
                if (i < N - 1) {
                    buffer.append(", ");
                }
            }
            buffer.append("}");
            return buffer.toString();
        } else if (data instanceof String) {
            return "\"" + (String) data + "\"";
        } else if (data instanceof ROI) {
            return "ROI \"" + ((ROI) data).getROIName() + "\"";
        } else if (data instanceof ROI[]) {
            ROI[] rois = (ROI[]) data;
            int N = rois.length;
            int MAX = 3;
            StringBuffer buffer = new StringBuffer("ROI[" + N + "] { ");
            for (int i = 0; i < N; i++) {
                buffer.append("\"" + rois[i].getROIName() + "\"");
                if (i >= MAX - 1) {
                    buffer.append(", ...");
                    break;
                }
                if (i < N - 1) {
                    buffer.append(", ");
                }
            }
            buffer.append("}");
            return buffer.toString();
        } else if (data instanceof Image) {
            Image image = (Image) data;
            return image.getClass().getSimpleName() + " " + image.getISize().toString();
        } else if (data instanceof ImageTimeSeries) {
            ImageTimeSeries ts = (ImageTimeSeries) data;
            int N = ts.getSizeT();
            double[] times = ts.getImageTimeStamps();
            return ts.getType().getSimpleName() + "[" + N + "] " + ts.getISize() + " times=[" + times[0] + "," + times[N - 1] + "]";
        } else if (data != null) {
            return data.toString();
        } else {
            return "null " + dataType.getSimpleName();
        }
    }
}

Example 8 with WorkflowObject

use of org.vcell.workflow.WorkflowObject in project vcell by virtualcell.

the class WorkflowObjectsTableModel method setValueAt.

public void setValueAt(Object value, int row, int col) {
    if (value == null) {
        return;
    }
    try {
        String inputValue = (String) value;
        inputValue = inputValue.trim();
        WorkflowObject workflowObject = getValueAt(row);
        switch(col) {
            case COLUMN_VALUE:
                {
                    if (inputValue.length() == 0) {
                        return;
                    }
                    if (workflowObject instanceof WorkflowParameter) {
                        WorkflowParameter dataHolder = (WorkflowParameter) workflowObject;
                        Class dataClass = dataHolder.getType();
                        Repository repository = taskContext.getRepository();
                        Workflow workflow = taskContext.getWorkflow();
                        if (dataClass.equals(Double.class)) {
                            repository.setData(dataHolder, Double.valueOf(inputValue));
                            workflow.refreshStatus();
                        } else if (dataClass.equals(Float.class)) {
                            repository.setData(dataHolder, Float.valueOf(inputValue));
                            workflow.refreshStatus();
                        } else if (dataClass.equals(Integer.class)) {
                            repository.setData(dataHolder, Integer.valueOf(inputValue));
                            workflow.refreshStatus();
                        } else if (dataClass.equals(Boolean.class)) {
                            repository.setData(dataHolder, Boolean.valueOf(inputValue));
                            workflow.refreshStatus();
                        } else if (dataClass.equals(String.class)) {
                            repository.setData(dataHolder, inputValue);
                            workflow.refreshStatus();
                        } else {
                            System.out.println("type " + dataClass.getSimpleName() + " not supported");
                        }
                    }
                    break;
                }
        }
    } catch (Exception e) {
        e.printStackTrace(System.out);
    }
}

Example 9 with WorkflowObject

use of org.vcell.workflow.WorkflowObject in project vcell by virtualcell.

the class WorkflowObjectsPanel method showButtonPressed.

private void showButtonPressed() {
    int[] rows = parametersFunctionsTable.getSelectedRows();
    if (rows == null || rows.length == 0) {
        return;
    }
    for (int r : rows) {
        if (r < parametersFunctionsTableModel.getRowCount()) {
            WorkflowObject workflowObject = parametersFunctionsTableModel.getValueAt(r);
            displayData(taskContext, workflowObject);
        }
    }
}

Example 10 with WorkflowObject

use of org.vcell.workflow.WorkflowObject in project vcell by virtualcell.

the class WorkflowObjectsPanel method tableSelectionChanged.

protected void tableSelectionChanged() {
    int[] rows = parametersFunctionsTable.getSelectedRows();
    if (rows == null || rows.length == 0) {
        showButton.setEnabled(false);
        deleteButton.setEnabled(false);
        return;
    }
    boolean bAllTasks = true;
    boolean bAllDisplable = true;
    for (int r : rows) {
        if (r < parametersFunctionsTableModel.getRowCount()) {
            WorkflowObject workflowObject = parametersFunctionsTableModel.getValueAt(r);
            if (!(workflowObject instanceof Task)) {
                bAllTasks = false;
            }
            if (!hasDisplayData(taskContext, workflowObject)) {
                bAllDisplable = false;
            }
        }
    }
    deleteButton.setEnabled(bAllTasks);
    showButton.setEnabled(bAllDisplable);
}