Example 1 with Holder
use of sc.fiji.labkit.ui.models.Holder in project labkit-ui by juglab.
the class SegmentationAsLabelAction method addLabel.
private void addLabel(String selected, int index, RandomAccessibleInterval<ShortType> segmentation) {
Converter<ShortType, BitType> converter = (in, out) -> out.set(in.get() == index);
RandomAccessibleInterval<BitType> result = Converters.convert(segmentation, converter, new BitType());
Holder<Labeling> labelingHolder = labelingModel.labeling();
addLabel(labelingHolder.get(), "segmented " + selected, result);
labelingHolder.notifier().notifyListeners();
}
Also used :
BitType(net.imglib2.type.logic.BitType)
RandomAccess(net.imglib2.RandomAccess)
Converter(net.imglib2.converter.Converter)
List(java.util.List)
Cursor(net.imglib2.Cursor)
MenuBar(sc.fiji.labkit.ui.MenuBar)
RandomAccessibleInterval(net.imglib2.RandomAccessibleInterval)
Labeling(sc.fiji.labkit.ui.labeling.Labeling)
LabelingType(net.imglib2.roi.labeling.LabelingType)
ImageLabelingModel(sc.fiji.labkit.ui.models.ImageLabelingModel)
SegmentationItem(sc.fiji.labkit.ui.models.SegmentationItem)
Converters(net.imglib2.converter.Converters)
Extensible(sc.fiji.labkit.ui.Extensible)
Label(sc.fiji.labkit.ui.labeling.Label)
SegmentationResultsModel(sc.fiji.labkit.ui.models.SegmentationResultsModel)
Holder(sc.fiji.labkit.ui.models.Holder)
ShortType(net.imglib2.type.numeric.integer.ShortType)
SegmentationModel(sc.fiji.labkit.ui.models.SegmentationModel)
Views(net.imglib2.view.Views)
javax.swing(javax.swing)
BitType(net.imglib2.type.logic.BitType)
ShortType(net.imglib2.type.numeric.integer.ShortType)
Labeling(sc.fiji.labkit.ui.labeling.Labeling)
Aggregations
List (java.util.List)1
javax.swing (javax.swing)1
Cursor (net.imglib2.Cursor)1
RandomAccess (net.imglib2.RandomAccess)1
RandomAccessibleInterval (net.imglib2.RandomAccessibleInterval)1
Converter (net.imglib2.converter.Converter)1
Converters (net.imglib2.converter.Converters)1
LabelingType (net.imglib2.roi.labeling.LabelingType)1
BitType (net.imglib2.type.logic.BitType)1
ShortType (net.imglib2.type.numeric.integer.ShortType)1
Views (net.imglib2.view.Views)1
Extensible (sc.fiji.labkit.ui.Extensible)1
MenuBar (sc.fiji.labkit.ui.MenuBar)1
Label (sc.fiji.labkit.ui.labeling.Label)1
Labeling (sc.fiji.labkit.ui.labeling.Labeling)1
Holder (sc.fiji.labkit.ui.models.Holder)1
ImageLabelingModel (sc.fiji.labkit.ui.models.ImageLabelingModel)1
SegmentationItem (sc.fiji.labkit.ui.models.SegmentationItem)1
SegmentationModel (sc.fiji.labkit.ui.models.SegmentationModel)1
SegmentationResultsModel (sc.fiji.labkit.ui.models.SegmentationResultsModel)1
