Examples with SequencingControlType uk.ac.bbsrc.tgac.miso.core.data.SequencingControlType used on opensource projects

Example 1 with SequencingControlType

use of uk.ac.bbsrc.tgac.miso.core.data.SequencingControlType in project miso-lims by miso-lims.

the class Dtos method to.

public static SequencingControlType to(@Nonnull SequencingControlTypeDto from) {
    SequencingControlType to = new SequencingControlType();
    setLong(to::setId, from.getId(), false);
    setString(to::setAlias, from.getAlias());
    return to;
}

Example 2 with SequencingControlType

use of uk.ac.bbsrc.tgac.miso.core.data.SequencingControlType in project miso-lims by miso-lims.

the class HibernateSequencingControlTypeDaoIT method testGetUsage.

@Test
public void testGetUsage() throws Exception {
    SequencingControlType type = (SequencingControlType) currentSession().get(SequencingControlType.class, 1L);
    assertEquals(1L, sut.getUsage(type));
}

Example 3 with SequencingControlType

use of uk.ac.bbsrc.tgac.miso.core.data.SequencingControlType in project miso-lims by miso-lims.

the class Dtos method to.

public static Sample to(@Nonnull SampleDto from) {
    Sample to = null;
    if (from instanceof DetailedSampleDto) {
        to = toDetailedSample((DetailedSampleDto) from);
    } else {
        to = new SampleImpl();
    }
    if (from.getId() != null)
        to.setId(from.getId());
    to.setAccession(nullifyStringIfBlank(from.getAccession()));
    to.setName(from.getName());
    to.setDescription(nullifyStringIfBlank(from.getDescription()));
    to.setIdentificationBarcode(nullifyStringIfBlank(from.getIdentificationBarcode()));
    to.setLocationBarcode(nullifyStringIfBlank(from.getLocationBarcode()));
    to.setSampleType(from.getSampleType());
    setObject(to::setDetailedQcStatus, DetailedQcStatusImpl::new, from.getDetailedQcStatusId());
    setString(to::setDetailedQcStatusNote, from.getDetailedQcStatusNote());
    setObject(to::setScientificName, ScientificName::new, from.getScientificNameId());
    to.setTaxonIdentifier(from.getTaxonIdentifier());
    to.setAlias(from.getAlias());
    to.setDescription(from.getDescription());
    setBigDecimal(to::setInitialVolume, from.getInitialVolume());
    setBigDecimal(to::setVolume, from.getVolume());
    to.setVolumeUnits(from.getVolumeUnits());
    setBigDecimal(to::setConcentration, from.getConcentration());
    to.setConcentrationUnits(from.getConcentrationUnits());
    to.setDiscarded(from.isDiscarded());
    if (from.getProjectId() != null) {
        to.setProject(new ProjectImpl());
        to.getProject().setId(from.getProjectId());
    }
    to.setBoxPosition((SampleBoxPosition) makeBoxablePosition(from, (SampleImpl) to));
    setObject(to::setRequisition, Requisition::new, from.getRequisitionId());
    if (to.getRequisition() != null) {
        Requisition toRequisition = to.getRequisition();
        setString(toRequisition::setAlias, from.getRequisitionAlias());
        if (from.getRequisitionAssayId() != null) {
            setObject(toRequisition::setAssay, Assay::new, from.getRequisitionAssayId());
        }
    }
    setObject(to::setSequencingControlType, SequencingControlType::new, from.getSequencingControlTypeId());
    setObject(to::setSop, Sop::new, from.getSopId());
    to.setCreationReceiptInfo(toReceiptTransfer(from, to));
    return to;
}

Example 4 with SequencingControlType

use of uk.ac.bbsrc.tgac.miso.core.data.SequencingControlType in project miso-lims by miso-lims.

the class HibernateSequencingControlTypeDaoIT method testCreate.

@Test
public void testCreate() throws Exception {
    String alias = "New Control Type";
    SequencingControlType type = new SequencingControlType();
    type.setAlias(alias);
    long savedId = sut.create(type);
    clearSession();
    SequencingControlType saved = (SequencingControlType) currentSession().get(SequencingControlType.class, savedId);
    assertNotNull(saved);
    assertEquals(alias, saved.getAlias());
}

Example 5 with SequencingControlType

use of uk.ac.bbsrc.tgac.miso.core.data.SequencingControlType in project miso-lims by miso-lims.

the class HibernateSequencingControlTypeDaoIT method testGetByAlias.

@Test
public void testGetByAlias() throws Exception {
    String alias = "Positive";
    SequencingControlType type = sut.getByAlias(alias);
    assertNotNull(type);
    assertEquals(alias, type.getAlias());
}