Examples with ResultsSettings uk.ac.sussex.gdsc.smlm.data.config.ResultsProtos.ResultsSettings used on opensource projects

Example 1 with ResultsSettings

use of uk.ac.sussex.gdsc.smlm.data.config.ResultsProtos.ResultsSettings in project GDSC-SMLM by aherbert.

the class ResultsManager method showInteractiveTable.

/**
 * Show interactive table.
 *
 * @param results the results
 * @param resultsTableSettings the results table settings
 */
public static void showInteractiveTable(MemoryPeakResults results, ResultsTableSettings resultsTableSettings) {
    final PeakResultTableModel model = new PeakResultTableModel(results, true, resultsTableSettings);
    final PeakResultTableModelFrame frame = new PeakResultTableModelFrame(model);
    frame.setTitle(results.getName());
    frame.setVisible(true);
    // Save changes to the interactive table settings
    model.addSettingsUpdatedAction(s -> {
        // Load the latest settings and save the table options
        final ResultsSettings.Builder resultsSettings = SettingsManager.readResultsSettings(0).toBuilder();
        resultsSettings.setResultsTableSettings(s);
        SettingsManager.writeSettings(resultsSettings.build());
    });
}

Example 2 with ResultsSettings

use of uk.ac.sussex.gdsc.smlm.data.config.ResultsProtos.ResultsSettings in project GDSC-SMLM by aherbert.

the class ResultsManager method showDialog.

private boolean showDialog() {
    final ExtendedGenericDialog gd = new ExtendedGenericDialog(TITLE);
    gd.addHelp(HelpUrls.getUrl("results-manager"));
    settings = Settings.load();
    resultsSettings = SettingsManager.readResultsSettings(0).toBuilder();
    gd.addMessage("Read the Peak Results and output to a new format");
    gd.addMessage("Select the Peak Results");
    addInput(gd, INPUT_NAME, settings.inputOption, new FilenameLoadOption[] { new FilenameLoadOption(settings.inputFilename) }, InputSource.MEMORY, InputSource.FILE);
    final Choice inputChoice = gd.getLastChoice();
    addTableResultsOptions(gd, resultsSettings, FLAG_TABLE_FORMAT);
    addImageResultsOptions(gd, resultsSettings);
    addFileResultsOptions(gd, resultsSettings, 0);
    addInMemoryResultsOptions(gd, resultsSettings);
    final Label messageLabel = (Label) gd.getMessage();
    final Checkbox saveCheckbox = gd.getLastCheckbox();
    // Hide the in-memory settings if the input is not a file
    if (ImageJUtils.isShowGenericDialog()) {
        final Label saveLabel = gd.getLastLabel();
        final ItemListener listener = event -> {
            final boolean enable = INPUT_FILE.equals(inputChoice.getSelectedItem());
            if (enable != messageLabel.isVisible()) {
                messageLabel.setVisible(enable);
                saveCheckbox.setVisible(enable);
                saveLabel.setVisible(enable);
                gd.pack();
            }
        };
        // Run once to set up
        listener.itemStateChanged(null);
        inputChoice.addItemListener(listener);
    }
    gd.showDialog();
    if (gd.wasCanceled()) {
        return false;
    }
    settings.inputOption = ResultsManager.getInputSource(gd);
    settings.inputFilename = gd.getNextString();
    resultsSettings.getResultsTableSettingsBuilder().setResultsTableFormatValue(gd.getNextChoiceIndex());
    resultsSettings.getResultsImageSettingsBuilder().setImageTypeValue(gd.getNextChoiceIndex());
    resultsSettings.getResultsFileSettingsBuilder().setFileFormatValue(gd.getNextChoiceIndex());
    resultsSettings.getResultsFileSettingsBuilder().setResultsFilename(gd.getNextString());
    resultsSettings.getResultsInMemorySettingsBuilder().setInMemory(gd.getNextBoolean());
    gd.collectOptions();
    // Check arguments
    try {
        final ResultsImageSettings.Builder imageSettings = resultsSettings.getResultsImageSettingsBuilder();
        if (imageSettings.getImageType() == ResultsImageType.DRAW_INTENSITY_AVERAGE_PRECISION || imageSettings.getImageType() == ResultsImageType.DRAW_LOCALISATIONS_AVERAGE_PRECISION) {
            ParameterUtils.isAboveZero("Image precision", imageSettings.getAveragePrecision());
        }
        ParameterUtils.isAboveZero("Image scale", imageSettings.getScale());
        if (extraOptions) {
            ParameterUtils.isPositive("Image rolling window", imageSettings.getRollingWindowSize());
        }
    } catch (final IllegalArgumentException ex) {
        IJ.error(TITLE, ex.getMessage());
        return false;
    }
    settings.save();
    SettingsManager.writeSettings(resultsSettings.build());
    return true;
}