Search in sources :

Example 1 with DataTablesRequest

use of ca.corefacility.bioinformatics.irida.ria.web.components.datatables.config.DataTablesRequest in project irida by phac-nml.

the class ProjectExportController method getExportsForProject.

/**
 * Ajax method for getting the {@link NcbiExportSubmission}s for a given
 * {@link Project}
 *
 * @param projectId {@link Project} id
 * @param params    Parameters from the datatables request
 * @return DatatablesResponse of Map of submission params
 */
@RequestMapping("/ajax/projects/{projectId}/export/list")
@ResponseBody
public DataTablesResponse getExportsForProject(@DataTablesRequest DataTablesParams params, @PathVariable Long projectId) {
    Project project = projectService.read(projectId);
    List<NcbiExportSubmission> submissions = exportSubmissionService.getSubmissionsForProject(project);
    List<DataTablesResponseModel> dtExportSubmissions = submissions.stream().map(s -> new DTExportSubmission(s)).collect(Collectors.toList());
    return new DataTablesResponse(params, submissions.size(), dtExportSubmissions);
}
Also used : JsonProperty(com.fasterxml.jackson.annotation.JsonProperty) Builder(ca.corefacility.bioinformatics.irida.model.export.NcbiBioSampleFiles.Builder) java.util(java.util) DTExportSubmission(ca.corefacility.bioinformatics.irida.ria.web.models.datatables.DTExportSubmission) NcbiExportSubmission(ca.corefacility.bioinformatics.irida.model.NcbiExportSubmission) PreAuthorize(org.springframework.security.access.prepost.PreAuthorize) LoggerFactory(org.slf4j.LoggerFactory) Autowired(org.springframework.beans.factory.annotation.Autowired) Controller(org.springframework.stereotype.Controller) ProjectService(ca.corefacility.bioinformatics.irida.service.ProjectService) Value(org.springframework.beans.factory.annotation.Value) Model(org.springframework.ui.Model) DataTablesResponseModel(ca.corefacility.bioinformatics.irida.ria.web.components.datatables.models.DataTablesResponseModel) DataTablesResponse(ca.corefacility.bioinformatics.irida.ria.web.components.datatables.DataTablesResponse) Sort(org.springframework.data.domain.Sort) NcbiExportSubmissionService(ca.corefacility.bioinformatics.irida.service.export.NcbiExportSubmissionService) SequencingObjectService(ca.corefacility.bioinformatics.irida.service.SequencingObjectService) Logger(org.slf4j.Logger) ImmutableMap(com.google.common.collect.ImmutableMap) DataTablesRequest(ca.corefacility.bioinformatics.irida.ria.web.components.datatables.config.DataTablesRequest) SequenceFilePair(ca.corefacility.bioinformatics.irida.model.sequenceFile.SequenceFilePair) ca.corefacility.bioinformatics.irida.model.export(ca.corefacility.bioinformatics.irida.model.export) Sample(ca.corefacility.bioinformatics.irida.model.sample.Sample) SampleSequencingObjectJoin(ca.corefacility.bioinformatics.irida.model.sample.SampleSequencingObjectJoin) Page(org.springframework.data.domain.Page) Collectors(java.util.stream.Collectors) Project(ca.corefacility.bioinformatics.irida.model.project.Project) Principal(java.security.Principal) UserService(ca.corefacility.bioinformatics.irida.service.user.UserService) org.springframework.web.bind.annotation(org.springframework.web.bind.annotation) User(ca.corefacility.bioinformatics.irida.model.user.User) SampleService(ca.corefacility.bioinformatics.irida.service.sample.SampleService) SingleEndSequenceFile(ca.corefacility.bioinformatics.irida.model.sequenceFile.SingleEndSequenceFile) DataTablesParams(ca.corefacility.bioinformatics.irida.ria.web.components.datatables.DataTablesParams) Project(ca.corefacility.bioinformatics.irida.model.project.Project) NcbiExportSubmission(ca.corefacility.bioinformatics.irida.model.NcbiExportSubmission) DTExportSubmission(ca.corefacility.bioinformatics.irida.ria.web.models.datatables.DTExportSubmission) DataTablesResponseModel(ca.corefacility.bioinformatics.irida.ria.web.components.datatables.models.DataTablesResponseModel) DataTablesResponse(ca.corefacility.bioinformatics.irida.ria.web.components.datatables.DataTablesResponse)

Example 2 with DataTablesRequest

use of ca.corefacility.bioinformatics.irida.ria.web.components.datatables.config.DataTablesRequest in project irida by phac-nml.

the class AnnouncementsController method getUserAnnouncementInfoTable.

/**
 * Get user read status for current announcement
 * @param announcementID {@link Long} identifier for the {@link Announcement}
 * @param params {@link DataTablesParams} parameters for current DataTable
 * @return {@link DataTablesResponse} containing the list of users.
 */
@RequestMapping(value = "/{announcementID}/details/ajax/list", method = RequestMethod.GET)
@PreAuthorize("hasRole('ROLE_ADMIN')")
@ResponseBody
public DataTablesResponse getUserAnnouncementInfoTable(@PathVariable Long announcementID, @DataTablesRequest final DataTablesParams params) {
    final Announcement currentAnnouncement = announcementService.read(announcementID);
    final Page<User> page = userService.search(UserSpecification.searchUser(params.getSearchValue()), new PageRequest(params.getCurrentPage(), params.getLength(), params.getSort()));
    final List<DataTablesResponseModel> announcementUsers = page.getContent().stream().map(user -> new DTAnnouncementUser(user, userHasRead(user, currentAnnouncement))).collect(Collectors.toList());
    return new DataTablesResponse(params, page, announcementUsers);
}
Also used : PathVariable(org.springframework.web.bind.annotation.PathVariable) RequestParam(org.springframework.web.bind.annotation.RequestParam) PreAuthorize(org.springframework.security.access.prepost.PreAuthorize) LoggerFactory(org.slf4j.LoggerFactory) Autowired(org.springframework.beans.factory.annotation.Autowired) RequestMapping(org.springframework.web.bind.annotation.RequestMapping) Controller(org.springframework.stereotype.Controller) Announcement(ca.corefacility.bioinformatics.irida.model.announcements.Announcement) Model(org.springframework.ui.Model) DataTablesResponseModel(ca.corefacility.bioinformatics.irida.ria.web.components.datatables.models.DataTablesResponseModel) AnnouncementSpecification(ca.corefacility.bioinformatics.irida.repositories.specification.AnnouncementSpecification) DataTablesResponse(ca.corefacility.bioinformatics.irida.ria.web.components.datatables.DataTablesResponse) Logger(org.slf4j.Logger) DTAnnouncementUser(ca.corefacility.bioinformatics.irida.ria.web.models.datatables.DTAnnouncementUser) DataTablesRequest(ca.corefacility.bioinformatics.irida.ria.web.components.datatables.config.DataTablesRequest) PageRequest(org.springframework.data.domain.PageRequest) RequestMethod(org.springframework.web.bind.annotation.RequestMethod) IOException(java.io.IOException) DTAnnouncementAdmin(ca.corefacility.bioinformatics.irida.ria.web.models.datatables.DTAnnouncementAdmin) Page(org.springframework.data.domain.Page) ResponseBody(org.springframework.web.bind.annotation.ResponseBody) Collectors(java.util.stream.Collectors) UserSpecification(ca.corefacility.bioinformatics.irida.repositories.specification.UserSpecification) List(java.util.List) Principal(java.security.Principal) UserService(ca.corefacility.bioinformatics.irida.service.user.UserService) Optional(java.util.Optional) AnnouncementUserJoin(ca.corefacility.bioinformatics.irida.model.announcements.AnnouncementUserJoin) User(ca.corefacility.bioinformatics.irida.model.user.User) AnnouncementService(ca.corefacility.bioinformatics.irida.service.AnnouncementService) Collections(java.util.Collections) DataTablesParams(ca.corefacility.bioinformatics.irida.ria.web.components.datatables.DataTablesParams) PageRequest(org.springframework.data.domain.PageRequest) DTAnnouncementUser(ca.corefacility.bioinformatics.irida.ria.web.models.datatables.DTAnnouncementUser) User(ca.corefacility.bioinformatics.irida.model.user.User) Announcement(ca.corefacility.bioinformatics.irida.model.announcements.Announcement) DataTablesResponseModel(ca.corefacility.bioinformatics.irida.ria.web.components.datatables.models.DataTablesResponseModel) DTAnnouncementUser(ca.corefacility.bioinformatics.irida.ria.web.models.datatables.DTAnnouncementUser) DataTablesResponse(ca.corefacility.bioinformatics.irida.ria.web.components.datatables.DataTablesResponse) PreAuthorize(org.springframework.security.access.prepost.PreAuthorize) RequestMapping(org.springframework.web.bind.annotation.RequestMapping) ResponseBody(org.springframework.web.bind.annotation.ResponseBody)

Example 3 with DataTablesRequest

use of ca.corefacility.bioinformatics.irida.ria.web.components.datatables.config.DataTablesRequest in project irida by phac-nml.

the class GroupsController method getGroups.

/**
 * Search/filter/page with datatables for {@link UserGroup}.
 * @param params {@link DataTablesParams} for the current DataTable
 * @param principal Currently logged in user
 * @return {@link DataTablesResponse} for the current table base on the parameters.
 */
@RequestMapping("/ajax/list")
@ResponseBody
public DataTablesResponse getGroups(@DataTablesRequest final DataTablesParams params, final Principal principal) {
    Page<UserGroup> groups = userGroupService.search(UserGroupSpecification.searchUserGroup(params.getSearchValue()), new PageRequest(params.getCurrentPage(), params.getLength(), params.getSort()));
    User currentUser = userService.getUserByUsername(principal.getName());
    List<DataTablesResponseModel> groupsWithOwnership = groups.getContent().stream().map(ug -> new DTUserGroup(ug, isGroupOwner(currentUser, ug), currentUser.getSystemRole().equals(Role.ROLE_ADMIN))).collect(Collectors.toList());
    return new DataTablesResponse(params, groups, groupsWithOwnership);
}
Also used : UserGroupWithoutOwnerException(ca.corefacility.bioinformatics.irida.exceptions.UserGroupWithoutOwnerException) java.util(java.util) DTUserGroup(ca.corefacility.bioinformatics.irida.ria.web.models.datatables.DTUserGroup) UserGroupSpecification(ca.corefacility.bioinformatics.irida.repositories.specification.UserGroupSpecification) EntityExistsException(ca.corefacility.bioinformatics.irida.exceptions.EntityExistsException) LoggerFactory(org.slf4j.LoggerFactory) Autowired(org.springframework.beans.factory.annotation.Autowired) Controller(org.springframework.stereotype.Controller) Model(org.springframework.ui.Model) DataIntegrityViolationException(org.springframework.dao.DataIntegrityViolationException) ImmutableList(com.google.common.collect.ImmutableList) DataTablesResponseModel(ca.corefacility.bioinformatics.irida.ria.web.components.datatables.models.DataTablesResponseModel) DataTablesResponse(ca.corefacility.bioinformatics.irida.ria.web.components.datatables.DataTablesResponse) ConstraintViolation(javax.validation.ConstraintViolation) DTGroupMember(ca.corefacility.bioinformatics.irida.ria.web.models.datatables.DTGroupMember) MessageSource(org.springframework.context.MessageSource) Logger(org.slf4j.Logger) ImmutableMap(com.google.common.collect.ImmutableMap) Role(ca.corefacility.bioinformatics.irida.model.user.Role) DataTablesRequest(ca.corefacility.bioinformatics.irida.ria.web.components.datatables.config.DataTablesRequest) UserGroupRole(ca.corefacility.bioinformatics.irida.model.user.group.UserGroupJoin.UserGroupRole) UserGroupJoin(ca.corefacility.bioinformatics.irida.model.user.group.UserGroupJoin) PageRequest(org.springframework.data.domain.PageRequest) UserGroup(ca.corefacility.bioinformatics.irida.model.user.group.UserGroup) Page(org.springframework.data.domain.Page) Collectors(java.util.stream.Collectors) UserGroupService(ca.corefacility.bioinformatics.irida.service.user.UserGroupService) Principal(java.security.Principal) ConstraintViolationException(javax.validation.ConstraintViolationException) UserService(ca.corefacility.bioinformatics.irida.service.user.UserService) org.springframework.web.bind.annotation(org.springframework.web.bind.annotation) User(ca.corefacility.bioinformatics.irida.model.user.User) DataTablesParams(ca.corefacility.bioinformatics.irida.ria.web.components.datatables.DataTablesParams) DTUserGroup(ca.corefacility.bioinformatics.irida.ria.web.models.datatables.DTUserGroup) PageRequest(org.springframework.data.domain.PageRequest) User(ca.corefacility.bioinformatics.irida.model.user.User) DataTablesResponseModel(ca.corefacility.bioinformatics.irida.ria.web.components.datatables.models.DataTablesResponseModel) DataTablesResponse(ca.corefacility.bioinformatics.irida.ria.web.components.datatables.DataTablesResponse) DTUserGroup(ca.corefacility.bioinformatics.irida.ria.web.models.datatables.DTUserGroup) UserGroup(ca.corefacility.bioinformatics.irida.model.user.group.UserGroup)

Example 4 with DataTablesRequest

use of ca.corefacility.bioinformatics.irida.ria.web.components.datatables.config.DataTablesRequest in project irida by phac-nml.

the class SequencingRunController method listSequencingRuns.

/**
 * Get a list of all the sequencing runs
 *
 * @param params a {@link DataTablesParams} of the sort and paging options
 * @param locale the locale used by the browser for the current request.
 * @return A DatatablesResponse of DTSequencingRun of the runs
 */
@RequestMapping(value = "/ajax/list")
@ResponseBody
public DataTablesResponse listSequencingRuns(@DataTablesRequest DataTablesParams params, Locale locale) {
    Sort sort = params.getSort();
    Page<SequencingRun> list = sequencingRunService.list(params.getCurrentPage(), params.getLength(), sort);
    List<DTSequencingRun> runs = list.getContent().stream().map(s -> new DTSequencingRun(s, messageSource.getMessage(UPLOAD_STATUS_MESSAGE_BASE + s.getUploadStatus().toString(), null, locale))).collect(Collectors.toList());
    return new DataTablesResponse(params, list, runs);
}
Also used : PathVariable(org.springframework.web.bind.annotation.PathVariable) java.util(java.util) SequencingObjectService(ca.corefacility.bioinformatics.irida.service.SequencingObjectService) ImmutableMap(com.google.common.collect.ImmutableMap) DataTablesRequest(ca.corefacility.bioinformatics.irida.ria.web.components.datatables.config.DataTablesRequest) PreAuthorize(org.springframework.security.access.prepost.PreAuthorize) DTSequencingRun(ca.corefacility.bioinformatics.irida.ria.web.models.datatables.DTSequencingRun) Autowired(org.springframework.beans.factory.annotation.Autowired) RequestMapping(org.springframework.web.bind.annotation.RequestMapping) RequestMethod(org.springframework.web.bind.annotation.RequestMethod) Controller(org.springframework.stereotype.Controller) SequencingRunService(ca.corefacility.bioinformatics.irida.service.SequencingRunService) Page(org.springframework.data.domain.Page) ResponseBody(org.springframework.web.bind.annotation.ResponseBody) SequencingObject(ca.corefacility.bioinformatics.irida.model.sequenceFile.SequencingObject) Collectors(java.util.stream.Collectors) SequencingRun(ca.corefacility.bioinformatics.irida.model.run.SequencingRun) Model(org.springframework.ui.Model) DataTablesResponseModel(ca.corefacility.bioinformatics.irida.ria.web.components.datatables.models.DataTablesResponseModel) DataTablesResponse(ca.corefacility.bioinformatics.irida.ria.web.components.datatables.DataTablesResponse) User(ca.corefacility.bioinformatics.irida.model.user.User) Sort(org.springframework.data.domain.Sort) DataTablesParams(ca.corefacility.bioinformatics.irida.ria.web.components.datatables.DataTablesParams) MessageSource(org.springframework.context.MessageSource) DTSequencingRun(ca.corefacility.bioinformatics.irida.ria.web.models.datatables.DTSequencingRun) SequencingRun(ca.corefacility.bioinformatics.irida.model.run.SequencingRun) DTSequencingRun(ca.corefacility.bioinformatics.irida.ria.web.models.datatables.DTSequencingRun) Sort(org.springframework.data.domain.Sort) DataTablesResponse(ca.corefacility.bioinformatics.irida.ria.web.components.datatables.DataTablesResponse) RequestMapping(org.springframework.web.bind.annotation.RequestMapping) ResponseBody(org.springframework.web.bind.annotation.ResponseBody)

Aggregations

User (ca.corefacility.bioinformatics.irida.model.user.User)4 DataTablesParams (ca.corefacility.bioinformatics.irida.ria.web.components.datatables.DataTablesParams)4 DataTablesResponse (ca.corefacility.bioinformatics.irida.ria.web.components.datatables.DataTablesResponse)4 DataTablesRequest (ca.corefacility.bioinformatics.irida.ria.web.components.datatables.config.DataTablesRequest)4 DataTablesResponseModel (ca.corefacility.bioinformatics.irida.ria.web.components.datatables.models.DataTablesResponseModel)4 Collectors (java.util.stream.Collectors)4 Autowired (org.springframework.beans.factory.annotation.Autowired)4 Page (org.springframework.data.domain.Page)4 Controller (org.springframework.stereotype.Controller)4 Model (org.springframework.ui.Model)4 UserService (ca.corefacility.bioinformatics.irida.service.user.UserService)3 ImmutableMap (com.google.common.collect.ImmutableMap)3 Principal (java.security.Principal)3 java.util (java.util)3 Logger (org.slf4j.Logger)3 LoggerFactory (org.slf4j.LoggerFactory)3 PreAuthorize (org.springframework.security.access.prepost.PreAuthorize)3 MessageSource (org.springframework.context.MessageSource)2 PageRequest (org.springframework.data.domain.PageRequest)2 PathVariable (org.springframework.web.bind.annotation.PathVariable)2