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Example 56 with Message

use of bind.feature.generichierarchy.case1.model.Message in project openmrs-core by openmrs.

the class ORUR01HandlerTest method getForm_shouldPassIfReturnValueIsNullWhenUuidAndIdIsNull.

/**
 * @see ORUR01Handler#getForm(MSH)
 */
@Test
public void getForm_shouldPassIfReturnValueIsNullWhenUuidAndIdIsNull() throws Exception {
    String hl7String = "MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20090728170332||ORU^R01|gu99yBh4loLX2mh9cHaV|P|2.5|1||||||||\r" + "PID|||3^^^^||Beren^John^Bondo||\r" + "NK1|1|Jones^Jane^Lee^^RN|3A^Parent^99REL||||||||||||F|19751016|||||||||||||||||2^^^L^PI\r" + "PV1||O|1^Unknown||||1^Super User (admin)|||||||||||||||||||||||||||||||||||||20090714|||||||V\r" + "ORC|RE||||||||20090728165937|1^Super User\r" + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT\r" + "OBX|2|NM|5497^CD4 COUNT^99DCT||123|||||||||20090714\r" + "OBR|3|||23^FOOD CONSTRUCT^99DCT\r" + "OBX|1|CWE|21^FOOD ASSISTANCE FOR ENTIRE FAMILY^99DCT||22^UNKNOWN^99DCT^2471^UNKNOWN^99NAM|||||||||20090714";
    ORUR01Handler oruHandler = new ORUR01Handler();
    Message hl7message = parser.parse(hl7String);
    ORU_R01 oru = (ORU_R01) hl7message;
    ca.uhn.hl7v2.model.v25.segment.MSH msh = oru.getMSH();
    Form form = oruHandler.getForm(msh);
    Assert.assertNull(form);
}
Also used : Message(ca.uhn.hl7v2.model.Message) ORU_R01(ca.uhn.hl7v2.model.v25.message.ORU_R01) Form(org.openmrs.Form) Test(org.junit.Test) BaseContextSensitiveTest(org.openmrs.test.BaseContextSensitiveTest)

Example 57 with Message

use of bind.feature.generichierarchy.case1.model.Message in project openmrs-core by openmrs.

the class ORUR01HandlerTest method processNK1_shouldCreateARelationshipFromANK1Segment.

/**
 * @see ORUR01Handler#processNK1(Patient,NK1)
 */
@Test
public void processNK1_shouldCreateARelationshipFromANK1Segment() throws Exception {
    PersonService personService = Context.getPersonService();
    // the patient that is the focus of
    Patient patient = new Patient(3);
    // this hl7 message
    // the patient that is related to
    Patient relative = new Patient(2);
    // patientA
    // process a message with a single NK1 segment
    // defines relative as patient's Parent
    String hl7String = "MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20090728170332||ORU^R01|gu99yBh4loLX2mh9cHaV|P|2.5|1||||||||4^AMRS.ELD.FORMID\r" + "PID|||3^^^^||Beren^John^Bondo||\r" + "NK1|1|Jones^Jane^Lee^^RN|3A^Parent^99REL||||||||||||F|19751016|||||||||||||||||2^^^L^PI\r" + "PV1||O|1^Unknown||||1^Super User (admin)|||||||||||||||||||||||||||||||||||||20090714|||||||V\r" + "ORC|RE||||||||20090728165937|1^Super User\r" + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT\r" + "OBX|2|NM|5497^CD4 COUNT^99DCT||123|||||||||20090714\r" + "OBR|3|||23^FOOD CONSTRUCT^99DCT\r" + "OBX|1|CWE|21^FOOD ASSISTANCE FOR ENTIRE FAMILY^99DCT||22^UNKNOWN^99DCT^2471^UNKNOWN^99NAM|||||||||20090714";
    ORUR01Handler oruHandler = new ORUR01Handler();
    Message hl7message = parser.parse(hl7String);
    ORU_R01 oru = (ORU_R01) hl7message;
    List<NK1> nk1List = oruHandler.getNK1List(oru);
    for (NK1 nk1 : nk1List) oruHandler.processNK1(patient, nk1);
    // verify relationship was created
    List<Relationship> rels = personService.getRelationships(relative, patient, new RelationshipType(3));
    Assert.assertTrue("new relationship was not created", !rels.isEmpty() && rels.size() == 1);
}
Also used : Message(ca.uhn.hl7v2.model.Message) ORU_R01(ca.uhn.hl7v2.model.v25.message.ORU_R01) NK1(ca.uhn.hl7v2.model.v25.segment.NK1) PersonService(org.openmrs.api.PersonService) Relationship(org.openmrs.Relationship) RelationshipType(org.openmrs.RelationshipType) Patient(org.openmrs.Patient) Test(org.junit.Test) BaseContextSensitiveTest(org.openmrs.test.BaseContextSensitiveTest)

Example 58 with Message

use of bind.feature.generichierarchy.case1.model.Message in project openmrs-core by openmrs.

the class ORUR01HandlerTest method processMessage_shouldCreateObsGroupForOBRs.

/**
 * This method checks that obs grouping is happening correctly when processing an ORUR01
 *
 * @see ORUR01Handler#processMessage(Message)
 */
@Test
public void processMessage_shouldCreateObsGroupForOBRs() throws Exception {
    ObsService obsService = Context.getObsService();
    String hl7string = "MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20080226103553||ORU^R01|OD9PWqcD9g0NKn81rvSD|P|2.5|1||||||||66^AMRS.ELD.FORMID\r" + "PID|||3^^^^||John^Doe^||\r" + "PV1||O|1^Unknown Location||||1^Super User (1-8)|||||||||||||||||||||||||||||||||||||20080205|||||||V\r" + "ORC|RE||||||||20080226103428|1^Super User\r" + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT\r" + "OBX|1|DT|1592^MISSED RETURNED VISIT DATE^99DCT||20080201|||||||||20080205\r" + "OBR|2|||1726^FOLLOW-UP ACTION^99DCT\r" + "OBX|1|CWE|1558^PATIENT CONTACT METHOD^99DCT|1|1555^PHONE^99DCT|||||||||20080205\r" + "OBX|2|NM|1553^NUMBER OF ATTEMPTS^99DCT|1|1|||||||||20080205\r" + "OBX|3|NM|1554^SUCCESSFUL^99DCT|1|1|||||||||20080205";
    Message hl7message = parser.parse(hl7string);
    router.processMessage(hl7message);
    Patient patient = new Patient(3);
    Context.clearSession();
    // check for any obs
    List<Obs> obsForPatient2 = obsService.getObservationsByPerson(patient);
    assertNotNull(obsForPatient2);
    assertTrue("There should be some obs created for #3", obsForPatient2.size() > 0);
    // check for the missed return visit date obs
    Concept returnVisitDateConcept = new Concept(1592);
    Calendar cal = new GregorianCalendar();
    cal.set(2008, Calendar.FEBRUARY, 1, 0, 0, 0);
    Date returnVisitDate = cal.getTime();
    List<Obs> returnVisitDateObsForPatient2 = obsService.getObservationsByPersonAndConcept(patient, returnVisitDateConcept);
    assertEquals("There should be a return visit date", 1, returnVisitDateObsForPatient2.size());
    Obs firstObs = (Obs) returnVisitDateObsForPatient2.toArray()[0];
    cal.setTime(firstObs.getValueDatetime());
    cal.clear(Calendar.HOUR);
    cal.clear(Calendar.MINUTE);
    cal.clear(Calendar.SECOND);
    cal.clear(Calendar.MILLISECOND);
    assertEquals("The date should be the 1st", returnVisitDate.toString(), cal.getTime().toString());
    // check for the grouped obs
    Concept contactMethod = new Concept(1558);
    Concept phoneContact = Context.getConceptService().getConcept(1555);
    List<Obs> contactMethodObsForPatient2 = obsService.getObservationsByPersonAndConcept(patient, contactMethod);
    assertEquals("There should be a contact method", 1, contactMethodObsForPatient2.size());
    Obs firstContactMethodObs = (Obs) contactMethodObsForPatient2.toArray()[0];
    assertEquals("The contact method should be phone", phoneContact, firstContactMethodObs.getValueCoded());
    // check that there is a group id
    Obs obsGroup = firstContactMethodObs.getObsGroup();
    assertNotNull("Their should be a grouping obs", obsGroup);
    assertNotNull("Their should be an associated encounter", firstContactMethodObs.getEncounter());
    // check that the obs that are grouped have the same group id
    List<Integer> groupedConceptIds = new ArrayList<>();
    groupedConceptIds.add(1558);
    groupedConceptIds.add(1553);
    groupedConceptIds.add(1554);
    // total obs should be 5
    assertEquals(5, obsForPatient2.size());
    int groupedObsCount = 0;
    for (Obs obs : obsForPatient2) {
        if (groupedConceptIds.contains(obs.getConcept().getConceptId())) {
            groupedObsCount += 1;
            assertEquals("All of the parent groups should match", obsGroup, obs.getObsGroup());
        }
    }
    // the number of obs that were grouped
    assertEquals(3, groupedObsCount);
}
Also used : Concept(org.openmrs.Concept) Obs(org.openmrs.Obs) Message(ca.uhn.hl7v2.model.Message) Calendar(java.util.Calendar) GregorianCalendar(java.util.GregorianCalendar) GregorianCalendar(java.util.GregorianCalendar) ArrayList(java.util.ArrayList) Patient(org.openmrs.Patient) ObsService(org.openmrs.api.ObsService) Date(java.util.Date) Test(org.junit.Test) BaseContextSensitiveTest(org.openmrs.test.BaseContextSensitiveTest)

Example 59 with Message

use of bind.feature.generichierarchy.case1.model.Message in project openmrs-core by openmrs.

the class ORUR01HandlerTest method processMessage_shouldCreateObsValueCodedName.

/**
 * @see ORUR01Handler#processMessage(Message)
 */
@Test
public void processMessage_shouldCreateObsValueCodedName() throws Exception {
    ObsService obsService = Context.getObsService();
    // the patient that is the focus of
    Patient patient = new Patient(3);
    // this hl7 message
    // the question concept for
    Concept concept = new Concept(21);
    // "Food assistance for entire family?"
    // sanity check to make sure this obs doesn't exist already
    Assert.assertEquals(0, obsService.getObservationsByPersonAndConcept(patient, concept).size());
    String hl7String = "MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20090728170332||ORU^R01|gu99yBh4loLX2mh9cHaV|P|2.5|1||||||||4^AMRS.ELD.FORMID\r" + "PID|||3^^^^||Beren^John^Bondo||\r" + "PV1||O|1^Unknown||||1^Super User (admin)|||||||||||||||||||||||||||||||||||||20090714|||||||V\r" + "ORC|RE||||||||20090728165937|1^Super User\r" + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT\r" + "OBX|2|NM|5497^CD4 COUNT^99DCT||123|||||||||20090714\r" + "OBR|3|||23^FOOD CONSTRUCT^99DCT\r" + "OBX|1|CWE|21^FOOD ASSISTANCE FOR ENTIRE FAMILY^99DCT||22^UNKNOWN^99DCT^2471^UNKNOWN^99NAM|||||||||20090714";
    Message hl7message = parser.parse(hl7String);
    router.processMessage(hl7message);
    List<Obs> obss = obsService.getObservationsByPersonAndConcept(patient, concept);
    ConceptName name = obss.get(0).getValueCodedName();
    Assert.assertNotNull(name);
    Assert.assertEquals("The valueCodedName should be 2471", 2471, name.getId().intValue());
}
Also used : Concept(org.openmrs.Concept) Obs(org.openmrs.Obs) Message(ca.uhn.hl7v2.model.Message) Patient(org.openmrs.Patient) ConceptName(org.openmrs.ConceptName) ObsService(org.openmrs.api.ObsService) Test(org.junit.Test) BaseContextSensitiveTest(org.openmrs.test.BaseContextSensitiveTest)

Example 60 with Message

use of bind.feature.generichierarchy.case1.model.Message in project openmrs-core by openmrs.

the class ORUR01HandlerTest method processMessage_shouldSetValue_CodedMatchingABooleanConceptForObsIfTheAnswerIs0Or1AndQuestionDatatypeIsCoded.

/**
 * @see ORUR01Handler#processMessage(Message)
 */
@Test
public void processMessage_shouldSetValue_CodedMatchingABooleanConceptForObsIfTheAnswerIs0Or1AndQuestionDatatypeIsCoded() throws Exception {
    ObsService os = Context.getObsService();
    String hl7string = "MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20080226102656||ORU^R01|JqnfhKKtouEz8kzTk6Zo|P|2.5|1||||||||16^AMRS.ELD.FORMID\r" + "PID|||7^^^^||Collet^Test^Chebaskwony||\r" + "PV1||O|1^Unknown Location||||1^Super User (1-8)|||||||||||||||||||||||||||||||||||||20080212|||||||V\r" + "ORC|RE||||||||20080226102537|1^Super User\r" + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT\r" + "OBX|2|NM|21^CIVIL STATUS^99DCT||1|||||||||20080206";
    // the expected question for the obs in the hl7 message has to be coded
    Assert.assertEquals("Coded", Context.getConceptService().getConcept(21).getDatatype().getName());
    List<Obs> oldList = os.getObservationsByPersonAndConcept(new Person(7), new Concept(21));
    Message hl7message = parser.parse(hl7string);
    router.processMessage(hl7message);
    // hacky way to get the newly added obs and make tests on it
    List<Obs> newList = os.getObservationsByPersonAndConcept(new Person(7), new Concept(21));
    Obs newObservation = null;
    for (Obs newObs : newList) {
        if (!oldList.contains(newObs) && !newObs.isObsGrouping()) {
            newObservation = newObs;
        }
    }
    Assert.assertEquals(Context.getConceptService().getTrueConcept(), newObservation.getValueCoded());
}
Also used : Concept(org.openmrs.Concept) Obs(org.openmrs.Obs) Message(ca.uhn.hl7v2.model.Message) ObsService(org.openmrs.api.ObsService) Person(org.openmrs.Person) Test(org.junit.Test) BaseContextSensitiveTest(org.openmrs.test.BaseContextSensitiveTest)

Aggregations

Message (ca.uhn.hl7v2.model.Message)114 Test (org.junit.Test)81 BaseContextSensitiveTest (org.openmrs.test.BaseContextSensitiveTest)60 ORU_R01 (ca.uhn.hl7v2.model.v25.message.ORU_R01)30 NK1 (ca.uhn.hl7v2.model.v25.segment.NK1)21 Patient (org.openmrs.Patient)21 MockEndpoint (org.apache.camel.component.mock.MockEndpoint)17 ORUR01Handler (org.openmrs.hl7.handler.ORUR01Handler)15 Person (org.openmrs.Person)14 ArrayList (java.util.ArrayList)13 HL7Exception (ca.uhn.hl7v2.HL7Exception)12 Concept (org.openmrs.Concept)12 Obs (org.openmrs.Obs)12 ObsService (org.openmrs.api.ObsService)11 QRD (ca.uhn.hl7v2.model.v24.segment.QRD)9 IOException (java.io.IOException)8 Encounter (org.openmrs.Encounter)8 RouteBuilder (org.apache.camel.builder.RouteBuilder)7 Structure (ca.uhn.hl7v2.model.Structure)5 CX (ca.uhn.hl7v2.model.v25.datatype.CX)5