Examples with Gene binnie.core.genetics.Gene used on opensource projects

Example 6 with Gene

use of binnie.core.genetics.Gene in project Binnie by ForestryMC.

the class ItemSerum method getSubItems.

@Override
public void getSubItems(CreativeTabs tab, NonNullList<ItemStack> items) {
    if (this.isInCreativeTab(tab)) {
        for (ISpeciesRoot root : AlleleManager.alleleRegistry.getSpeciesRoot().values()) {
            Map<IChromosomeType, List<IAllele>> chromosomeMap = Binnie.GENETICS.getChromosomeMap(root);
            if (chromosomeMap != null) {
                for (Map.Entry<IChromosomeType, List<IAllele>> entry : chromosomeMap.entrySet()) {
                    IChromosomeType chromosome = entry.getKey();
                    for (final IAllele allele : entry.getValue()) {
                        Gene gene = Gene.create(allele, chromosome, root);
                        IGeneItem geneItem = new GeneItem(gene);
                        ItemStack stack = new ItemStack(this);
                        geneItem.writeToItem(stack);
                        items.add(stack);
                    }
                }
            }
        }
    }
}

Example 7 with Gene

use of binnie.core.genetics.Gene in project Binnie by ForestryMC.

the class ItemSerumArray method getSubItems.

@Override
public void getSubItems(CreativeTabs tab, NonNullList<ItemStack> items) {
    if (this.isInCreativeTab(tab)) {
        for (ISpeciesRoot root : AlleleManager.alleleRegistry.getSpeciesRoot().values()) {
            for (IIndividual template : root.getIndividualTemplates()) {
                if (template.getGenome().getPrimary().isSecret()) {
                    continue;
                }
                IGeneItem geneItem = new GeneArrayItem();
                for (IChromosomeType type : root.getKaryotype()) {
                    IChromosome chromosome = template.getGenome().getChromosomes()[type.ordinal()];
                    if (chromosome != null) {
                        IAllele active = chromosome.getActiveAllele();
                        geneItem.addGene(new Gene(active, type, root));
                    }
                }
                ItemStack array = new ItemStack(this);
                geneItem.writeToItem(array);
                items.add(array);
            }
        }
    }
}

Example 8 with Gene

use of binnie.core.genetics.Gene in project Binnie by ForestryMC.

the class ControlGeneScroll method refresh.

public void refresh() {
    if (system == null) {
        return;
    }
    this.deleteAllChildren();
    final GeneTracker tracker = GeneTracker.getTracker(Window.get(this).getWorld(), Window.get(this).getUsername());
    final Map<IChromosomeType, List<IAllele>> genes = Binnie.GENETICS.getChromosomeMap(this.system.getSpeciesRoot());
    int x = 0;
    int y = 0;
    final boolean master = ((WindowGeneBank) Window.get(this)).isMaster();
    for (final Map.Entry<IChromosomeType, List<IAllele>> entry : genes.entrySet()) {
        final List<IAllele> discovered = new ArrayList<>();
        for (final IAllele allele : entry.getValue()) {
            final Gene gene = new Gene(allele, entry.getKey(), this.system.getSpeciesRoot());
            if ((master || tracker.isSequenced(new Gene(allele, entry.getKey(), this.system.getSpeciesRoot()))) && gene.getName().toLowerCase().contains(this.filter)) {
                discovered.add(allele);
            }
        }
        if (discovered.size() == 0) {
            continue;
        }
        x = 0;
        new ControlText(this, new Point(x, y), this.system.getChromosomeName(entry.getKey()));
        y += 12;
        for (final IAllele allele : discovered) {
            if (x + 18 > this.getSize().xPos()) {
                y += 20;
                x = 0;
            }
            new ControlGene(this, x, y, new Gene(allele, entry.getKey(), this.system.getSpeciesRoot()));
            x += 18;
        }
        y += 24;
    }
    this.setSize(new Point(this.getSize().xPos(), y));
}

Example 9 with Gene

use of binnie.core.genetics.Gene in project Binnie by ForestryMC.

the class ItemSequence method getSubItems.

@Override
public void getSubItems(CreativeTabs tab, NonNullList<ItemStack> items) {
    if (this.isInCreativeTab(tab)) {
        final IAlleleBeeSpecies species = (IAlleleBeeSpecies) AlleleManager.alleleRegistry.getAllele("forestry.speciesMeadows");
        Preconditions.checkNotNull(species);
        items.add(create(new Gene(species, EnumBeeChromosome.SPECIES, BeeManager.beeRoot), false));
    }
}

Example 10 with Gene

use of binnie.core.genetics.Gene in project Binnie by ForestryMC.

the class SequencerRecipeMaker method create.

public static List<SequencerRecipeWrapper> create() {
    List<SequencerRecipeWrapper> recipes = new ArrayList<>();
    Collection<ISpeciesRoot> roots = AlleleManager.alleleRegistry.getSpeciesRoot().values();
    for (ISpeciesRoot root : roots) {
        IChromosomeType speciesChromosomeType = root.getSpeciesChromosomeType();
        IAllele[] defaultTemplate = root.getDefaultTemplate();
        IAllele species = defaultTemplate[speciesChromosomeType.ordinal()];
        ItemStack filledSequence = ItemSequence.create(new Gene(species, speciesChromosomeType, root), false);
        recipes.add(new SequencerRecipeWrapper(filledSequence));
        filledSequence = filledSequence.copy();
        filledSequence.setItemDamage(0);
        recipes.add(new SequencerRecipeWrapper(filledSequence));
    }
    return recipes;
}